Genetic diversity of Bromeliaceae species from the Atlantic Forest
The Bromeliaceae family includes a range of species used for many purposes, including ornamental use and use as food, medicine, feed, and fiber. The state of Espírito Santo, Brazil is a center of diversity for this family in the Atlantic Forest. We evaluated the genetic diversity of five populations...
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Veröffentlicht in: | Genetics and molecular research 2017-04, Vol.16 (2), p.1 |
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description | The Bromeliaceae family includes a range of species used for many purposes, including ornamental use and use as food, medicine, feed, and fiber. The state of Espírito Santo, Brazil is a center of diversity for this family in the Atlantic Forest. We evaluated the genetic diversity of five populations of the Bromeliaceae family, including specimens of the genera Aechmea, Billbergia (subfamily Bromelioideae), and Pitcairnia (subfamily Pitcairnioidea), all found in the Atlantic Forest and distributed in the state of Espírito Santo. The number of alleles per locus in populations ranged from two to six and the fixation index (F), estimated for some simple sequence repeats in bromeliad populations, was less than zero in all populations. All markers in the Pitcairnia flammea population were in Hardy-Weinberg equilibrium (P < 0.05). Moreover, significant deviations from Hardy-Weinberg equilibrium were observed at some loci in populations of the five bromeliad species. In most cases, this can be attributed to the presence of inbreeding or the Wahlund effect. The genetic diversity indices of five species showed greater allelic richness in P. flammea (3.55). Therefore, we provide useful information for the characterization of genetic diversity in natural populations of Aechmea ramosa, Aechmea nudicaulis, Billbergia horrid, Billbergia euphemia, and P. flammea in Atlantic Forest remnants in the south of Espírito Santo state. |
doi_str_mv | 10.4238/gmr16029636 |
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The state of Espírito Santo, Brazil is a center of diversity for this family in the Atlantic Forest. We evaluated the genetic diversity of five populations of the Bromeliaceae family, including specimens of the genera Aechmea, Billbergia (subfamily Bromelioideae), and Pitcairnia (subfamily Pitcairnioidea), all found in the Atlantic Forest and distributed in the state of Espírito Santo. The number of alleles per locus in populations ranged from two to six and the fixation index (F), estimated for some simple sequence repeats in bromeliad populations, was less than zero in all populations. All markers in the Pitcairnia flammea population were in Hardy-Weinberg equilibrium (P < 0.05). Moreover, significant deviations from Hardy-Weinberg equilibrium were observed at some loci in populations of the five bromeliad species. In most cases, this can be attributed to the presence of inbreeding or the Wahlund effect. The genetic diversity indices of five species showed greater allelic richness in P. flammea (3.55). Therefore, we provide useful information for the characterization of genetic diversity in natural populations of Aechmea ramosa, Aechmea nudicaulis, Billbergia horrid, Billbergia euphemia, and P. flammea in Atlantic Forest remnants in the south of Espírito Santo state.</description><identifier>ISSN: 1676-5680</identifier><identifier>EISSN: 1676-5680</identifier><identifier>DOI: 10.4238/gmr16029636</identifier><identifier>PMID: 28437558</identifier><language>eng</language><publisher>Brazil: Fundacao de Pesquisas Cientificas de Ribeirao Preto</publisher><subject>Aechmea ; Alleles ; Billbergia ; Biodiversity ; Brazil ; Bromeliaceae ; Bromeliaceae - classification ; Bromeliaceae - genetics ; Diversity indices ; Forests ; Genetic diversity ; Genetic Loci ; Inbreeding ; Pitcairnia ; Polymorphism, Genetic ; Population genetics ; Simple sequence repeats ; Species</subject><ispartof>Genetics and molecular research, 2017-04, Vol.16 (2), p.1</ispartof><rights>Copyright Fundacao de Pesquisas Cientificas de Ribeirao Preto 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c354t-2b720f079d4ced171baeb39f3098fe7b85b707b05f57bfb86657809245e317243</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28437558$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sheu, Y</creatorcontrib><creatorcontrib>Cunha-Machado, A S</creatorcontrib><creatorcontrib>Gontijo, A B P L</creatorcontrib><creatorcontrib>Favoreto, F C</creatorcontrib><creatorcontrib>Soares, T B C</creatorcontrib><creatorcontrib>Miranda, F D</creatorcontrib><title>Genetic diversity of Bromeliaceae species from the Atlantic Forest</title><title>Genetics and molecular research</title><addtitle>Genet Mol Res</addtitle><description>The Bromeliaceae family includes a range of species used for many purposes, including ornamental use and use as food, medicine, feed, and fiber. The state of Espírito Santo, Brazil is a center of diversity for this family in the Atlantic Forest. We evaluated the genetic diversity of five populations of the Bromeliaceae family, including specimens of the genera Aechmea, Billbergia (subfamily Bromelioideae), and Pitcairnia (subfamily Pitcairnioidea), all found in the Atlantic Forest and distributed in the state of Espírito Santo. The number of alleles per locus in populations ranged from two to six and the fixation index (F), estimated for some simple sequence repeats in bromeliad populations, was less than zero in all populations. All markers in the Pitcairnia flammea population were in Hardy-Weinberg equilibrium (P < 0.05). Moreover, significant deviations from Hardy-Weinberg equilibrium were observed at some loci in populations of the five bromeliad species. In most cases, this can be attributed to the presence of inbreeding or the Wahlund effect. The genetic diversity indices of five species showed greater allelic richness in P. flammea (3.55). Therefore, we provide useful information for the characterization of genetic diversity in natural populations of Aechmea ramosa, Aechmea nudicaulis, Billbergia horrid, Billbergia euphemia, and P. flammea in Atlantic Forest remnants in the south of Espírito Santo state.</description><subject>Aechmea</subject><subject>Alleles</subject><subject>Billbergia</subject><subject>Biodiversity</subject><subject>Brazil</subject><subject>Bromeliaceae</subject><subject>Bromeliaceae - classification</subject><subject>Bromeliaceae - genetics</subject><subject>Diversity indices</subject><subject>Forests</subject><subject>Genetic diversity</subject><subject>Genetic Loci</subject><subject>Inbreeding</subject><subject>Pitcairnia</subject><subject>Polymorphism, Genetic</subject><subject>Population genetics</subject><subject>Simple sequence repeats</subject><subject>Species</subject><issn>1676-5680</issn><issn>1676-5680</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkM1Lw0AQxRdRbK2evEvAiyDR2d3s17EttgoFL3oO2WRWU5Km7iZC_3sTWqV4mmH4vTePR8g1hYeEcf34UXsqgRnJ5QkZU6lkLKSG06N9RC5CWAMwkWg4JyOmE66E0GMyW-IG2zKPivIbfSjbXdS4aOabGqsyyzHDKGwxLzFErj9G7SdG07bKNoNm0XgM7SU5c1kV8OowJ-R98fQ2f45Xr8uX-XQV51wkbcysYuBAmSLJsaCK2gwtN46D0Q6V1cIqUBaEE8o6q6UUSoNhiUBOFUv4hNztfbe--er6x2ldhhyrPgw2XUipNlRrxUH26O0_dN10ftOnSxmAVIYbMVD3eyr3TQgeXbr1ZZ35XUohHapNj6rt6ZuDZ2drLP7Y3y75D9uYck8</recordid><startdate>20170420</startdate><enddate>20170420</enddate><creator>Sheu, Y</creator><creator>Cunha-Machado, A S</creator><creator>Gontijo, A B P L</creator><creator>Favoreto, F C</creator><creator>Soares, T B C</creator><creator>Miranda, F D</creator><general>Fundacao de Pesquisas Cientificas de Ribeirao Preto</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>H94</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20170420</creationdate><title>Genetic diversity of Bromeliaceae species from the Atlantic Forest</title><author>Sheu, Y ; Cunha-Machado, A S ; Gontijo, A B P L ; Favoreto, F C ; Soares, T B C ; Miranda, F D</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c354t-2b720f079d4ced171baeb39f3098fe7b85b707b05f57bfb86657809245e317243</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Aechmea</topic><topic>Alleles</topic><topic>Billbergia</topic><topic>Biodiversity</topic><topic>Brazil</topic><topic>Bromeliaceae</topic><topic>Bromeliaceae - classification</topic><topic>Bromeliaceae - genetics</topic><topic>Diversity indices</topic><topic>Forests</topic><topic>Genetic diversity</topic><topic>Genetic Loci</topic><topic>Inbreeding</topic><topic>Pitcairnia</topic><topic>Polymorphism, Genetic</topic><topic>Population genetics</topic><topic>Simple sequence repeats</topic><topic>Species</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sheu, Y</creatorcontrib><creatorcontrib>Cunha-Machado, A S</creatorcontrib><creatorcontrib>Gontijo, A B P L</creatorcontrib><creatorcontrib>Favoreto, F C</creatorcontrib><creatorcontrib>Soares, T B C</creatorcontrib><creatorcontrib>Miranda, F D</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Genetics and molecular research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sheu, Y</au><au>Cunha-Machado, A S</au><au>Gontijo, A B P L</au><au>Favoreto, F C</au><au>Soares, T B C</au><au>Miranda, F D</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity of Bromeliaceae species from the Atlantic Forest</atitle><jtitle>Genetics and molecular research</jtitle><addtitle>Genet Mol Res</addtitle><date>2017-04-20</date><risdate>2017</risdate><volume>16</volume><issue>2</issue><spage>1</spage><pages>1-</pages><issn>1676-5680</issn><eissn>1676-5680</eissn><abstract>The Bromeliaceae family includes a range of species used for many purposes, including ornamental use and use as food, medicine, feed, and fiber. The state of Espírito Santo, Brazil is a center of diversity for this family in the Atlantic Forest. We evaluated the genetic diversity of five populations of the Bromeliaceae family, including specimens of the genera Aechmea, Billbergia (subfamily Bromelioideae), and Pitcairnia (subfamily Pitcairnioidea), all found in the Atlantic Forest and distributed in the state of Espírito Santo. The number of alleles per locus in populations ranged from two to six and the fixation index (F), estimated for some simple sequence repeats in bromeliad populations, was less than zero in all populations. All markers in the Pitcairnia flammea population were in Hardy-Weinberg equilibrium (P < 0.05). Moreover, significant deviations from Hardy-Weinberg equilibrium were observed at some loci in populations of the five bromeliad species. In most cases, this can be attributed to the presence of inbreeding or the Wahlund effect. The genetic diversity indices of five species showed greater allelic richness in P. flammea (3.55). Therefore, we provide useful information for the characterization of genetic diversity in natural populations of Aechmea ramosa, Aechmea nudicaulis, Billbergia horrid, Billbergia euphemia, and P. flammea in Atlantic Forest remnants in the south of Espírito Santo state.</abstract><cop>Brazil</cop><pub>Fundacao de Pesquisas Cientificas de Ribeirao Preto</pub><pmid>28437558</pmid><doi>10.4238/gmr16029636</doi><oa>free_for_read</oa></addata></record> |
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subjects | Aechmea Alleles Billbergia Biodiversity Brazil Bromeliaceae Bromeliaceae - classification Bromeliaceae - genetics Diversity indices Forests Genetic diversity Genetic Loci Inbreeding Pitcairnia Polymorphism, Genetic Population genetics Simple sequence repeats Species |
title | Genetic diversity of Bromeliaceae species from the Atlantic Forest |
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