Genetic diversity of Bromeliaceae species from the Atlantic Forest

The Bromeliaceae family includes a range of species used for many purposes, including ornamental use and use as food, medicine, feed, and fiber. The state of Espírito Santo, Brazil is a center of diversity for this family in the Atlantic Forest. We evaluated the genetic diversity of five populations...

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Veröffentlicht in:Genetics and molecular research 2017-04, Vol.16 (2), p.1
Hauptverfasser: Sheu, Y, Cunha-Machado, A S, Gontijo, A B P L, Favoreto, F C, Soares, T B C, Miranda, F D
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container_title Genetics and molecular research
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creator Sheu, Y
Cunha-Machado, A S
Gontijo, A B P L
Favoreto, F C
Soares, T B C
Miranda, F D
description The Bromeliaceae family includes a range of species used for many purposes, including ornamental use and use as food, medicine, feed, and fiber. The state of Espírito Santo, Brazil is a center of diversity for this family in the Atlantic Forest. We evaluated the genetic diversity of five populations of the Bromeliaceae family, including specimens of the genera Aechmea, Billbergia (subfamily Bromelioideae), and Pitcairnia (subfamily Pitcairnioidea), all found in the Atlantic Forest and distributed in the state of Espírito Santo. The number of alleles per locus in populations ranged from two to six and the fixation index (F), estimated for some simple sequence repeats in bromeliad populations, was less than zero in all populations. All markers in the Pitcairnia flammea population were in Hardy-Weinberg equilibrium (P < 0.05). Moreover, significant deviations from Hardy-Weinberg equilibrium were observed at some loci in populations of the five bromeliad species. In most cases, this can be attributed to the presence of inbreeding or the Wahlund effect. The genetic diversity indices of five species showed greater allelic richness in P. flammea (3.55). Therefore, we provide useful information for the characterization of genetic diversity in natural populations of Aechmea ramosa, Aechmea nudicaulis, Billbergia horrid, Billbergia euphemia, and P. flammea in Atlantic Forest remnants in the south of Espírito Santo state.
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The state of Espírito Santo, Brazil is a center of diversity for this family in the Atlantic Forest. We evaluated the genetic diversity of five populations of the Bromeliaceae family, including specimens of the genera Aechmea, Billbergia (subfamily Bromelioideae), and Pitcairnia (subfamily Pitcairnioidea), all found in the Atlantic Forest and distributed in the state of Espírito Santo. The number of alleles per locus in populations ranged from two to six and the fixation index (F), estimated for some simple sequence repeats in bromeliad populations, was less than zero in all populations. All markers in the Pitcairnia flammea population were in Hardy-Weinberg equilibrium (P &lt; 0.05). Moreover, significant deviations from Hardy-Weinberg equilibrium were observed at some loci in populations of the five bromeliad species. In most cases, this can be attributed to the presence of inbreeding or the Wahlund effect. The genetic diversity indices of five species showed greater allelic richness in P. flammea (3.55). Therefore, we provide useful information for the characterization of genetic diversity in natural populations of Aechmea ramosa, Aechmea nudicaulis, Billbergia horrid, Billbergia euphemia, and P. flammea in Atlantic Forest remnants in the south of Espírito Santo state.</description><identifier>ISSN: 1676-5680</identifier><identifier>EISSN: 1676-5680</identifier><identifier>DOI: 10.4238/gmr16029636</identifier><identifier>PMID: 28437558</identifier><language>eng</language><publisher>Brazil: Fundacao de Pesquisas Cientificas de Ribeirao Preto</publisher><subject>Aechmea ; Alleles ; Billbergia ; Biodiversity ; Brazil ; Bromeliaceae ; Bromeliaceae - classification ; Bromeliaceae - genetics ; Diversity indices ; Forests ; Genetic diversity ; Genetic Loci ; Inbreeding ; Pitcairnia ; Polymorphism, Genetic ; Population genetics ; Simple sequence repeats ; Species</subject><ispartof>Genetics and molecular research, 2017-04, Vol.16 (2), p.1</ispartof><rights>Copyright Fundacao de Pesquisas Cientificas de Ribeirao Preto 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c354t-2b720f079d4ced171baeb39f3098fe7b85b707b05f57bfb86657809245e317243</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28437558$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sheu, Y</creatorcontrib><creatorcontrib>Cunha-Machado, A S</creatorcontrib><creatorcontrib>Gontijo, A B P L</creatorcontrib><creatorcontrib>Favoreto, F C</creatorcontrib><creatorcontrib>Soares, T B C</creatorcontrib><creatorcontrib>Miranda, F D</creatorcontrib><title>Genetic diversity of Bromeliaceae species from the Atlantic Forest</title><title>Genetics and molecular research</title><addtitle>Genet Mol Res</addtitle><description>The Bromeliaceae family includes a range of species used for many purposes, including ornamental use and use as food, medicine, feed, and fiber. The state of Espírito Santo, Brazil is a center of diversity for this family in the Atlantic Forest. We evaluated the genetic diversity of five populations of the Bromeliaceae family, including specimens of the genera Aechmea, Billbergia (subfamily Bromelioideae), and Pitcairnia (subfamily Pitcairnioidea), all found in the Atlantic Forest and distributed in the state of Espírito Santo. The number of alleles per locus in populations ranged from two to six and the fixation index (F), estimated for some simple sequence repeats in bromeliad populations, was less than zero in all populations. All markers in the Pitcairnia flammea population were in Hardy-Weinberg equilibrium (P &lt; 0.05). Moreover, significant deviations from Hardy-Weinberg equilibrium were observed at some loci in populations of the five bromeliad species. In most cases, this can be attributed to the presence of inbreeding or the Wahlund effect. 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subjects Aechmea
Alleles
Billbergia
Biodiversity
Brazil
Bromeliaceae
Bromeliaceae - classification
Bromeliaceae - genetics
Diversity indices
Forests
Genetic diversity
Genetic Loci
Inbreeding
Pitcairnia
Polymorphism, Genetic
Population genetics
Simple sequence repeats
Species
title Genetic diversity of Bromeliaceae species from the Atlantic Forest
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