Antimicrobial susceptibility of Bacteroides fragilis group organisms in Hong Kong by the tentative EUCAST disc diffusion method
This study used a recently developed EUCAST disc diffusion method to measure the susceptibility of 741 B. fragilis group isolates to six antibiotics. Isolates nonsusceptible to imipenem and metronidazole by the disc method were further investigated by E-test. Species identification was obtained by m...
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description | This study used a recently developed EUCAST disc diffusion method to measure the susceptibility of 741 B. fragilis group isolates to six antibiotics. Isolates nonsusceptible to imipenem and metronidazole by the disc method were further investigated by E-test. Species identification was obtained by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS), PCR assays and 16S rRNA sequencing. The most common species were B. fragilis (n = 424, including 81 division II and 343 division I isolates), B. thetaiotaomicron (n = 111), B. ovatus (n = 53) and B. vulgatus (n = 46). Overall, metronidazole following by imipenem and amoxicillin-clavulanate are the most active agents with over 90% of all the isolates being susceptible at the tentative disc breakpoints. Susceptibility rates for moxifloxacin (69.5%), piperacillin-tazobactam (58.2%) and clindamycin (37.2%) were much lower. Metronidazole is the only agent active against >90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates. With the exception of B. fragilis division II, imipenem was active against 88.0%–98.3% of isolates of the other species. Susceptibility rates for clindamycin (14.4%–54.3%) and moxifloxacin (33.3%–80.6%) were low across all species and many isolates had no inhibition zone around the discs. E-test testing confirmed 8.2% (61/741) and 1.6% (12/741) isolates as nonsusceptible to imipenem and metronidazole, respectively with B. fragilis and B. thetaoiotaomicron accounting for a large share of the observed resistance to both agents. Two imipenem-resistant and one metronidazole-resistant B. dorei were misidentified as B. vulgatus by MALDI-TOF MS. These data highlights the importance anaerobic susceptibility testing in clinical laboratories to guide therapy.
•Resistance of Bacteroides fragilis group bacteria is linked to outcome.•Antimicrobial susceptibilities of 741 B. fragilis group bacteria were assessed.•Metronidazole is the only agent active against >90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates.•Except for B. fragilis division II, imipenem was active against 88.0%–98.3% of the other subgroups.•Susceptibility rates for clindamycin and moxifloxacin were low for many species within B. fragilis group. |
doi_str_mv | 10.1016/j.anaerobe.2017.04.005 |
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•Resistance of Bacteroides fragilis group bacteria is linked to outcome.•Antimicrobial susceptibilities of 741 B. fragilis group bacteria were assessed.•Metronidazole is the only agent active against >90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates.•Except for B. fragilis division II, imipenem was active against 88.0%–98.3% of the other subgroups.•Susceptibility rates for clindamycin and moxifloxacin were low for many species within B. fragilis group.</description><identifier>ISSN: 1075-9964</identifier><identifier>EISSN: 1095-8274</identifier><identifier>DOI: 10.1016/j.anaerobe.2017.04.005</identifier><identifier>PMID: 28414107</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Anti-Bacterial Agents - pharmacology ; Bacteroides - classification ; Bacteroides - drug effects ; Bacteroides - isolation & purification ; Bacteroides dorei ; Bacteroides fragilis ; Bacteroides thetaoiotaomicron ; Disk Diffusion Antimicrobial Tests ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Drug Resistance, Bacterial ; Hong Kong ; Humans ; Imipenem resistance ; Metronidazole resistance ; Polymerase Chain Reaction ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization</subject><ispartof>Anaerobe, 2017-10, Vol.47, p.51-56</ispartof><rights>2017 Elsevier Ltd</rights><rights>Copyright © 2017 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c368t-450ac000c9fb311ebb51c616757c03b4744c5a049e673c54b243815791d06f993</citedby><cites>FETCH-LOGICAL-c368t-450ac000c9fb311ebb51c616757c03b4744c5a049e673c54b243815791d06f993</cites><orcidid>0000-0002-8811-1308 ; 0000-0003-3913-1887</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.anaerobe.2017.04.005$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>315,781,785,3551,27929,27930,46000</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28414107$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ho, Pak-Leung</creatorcontrib><creatorcontrib>Yau, Chong-Yee</creatorcontrib><creatorcontrib>Ho, Lok-Yan</creatorcontrib><creatorcontrib>Lai, Eileen Ling-Yi</creatorcontrib><creatorcontrib>Liu, Melissa Chun-Jiao</creatorcontrib><creatorcontrib>Tse, Cindy Wing-Sze</creatorcontrib><creatorcontrib>Chow, Kin-Hung</creatorcontrib><title>Antimicrobial susceptibility of Bacteroides fragilis group organisms in Hong Kong by the tentative EUCAST disc diffusion method</title><title>Anaerobe</title><addtitle>Anaerobe</addtitle><description>This study used a recently developed EUCAST disc diffusion method to measure the susceptibility of 741 B. fragilis group isolates to six antibiotics. Isolates nonsusceptible to imipenem and metronidazole by the disc method were further investigated by E-test. Species identification was obtained by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS), PCR assays and 16S rRNA sequencing. The most common species were B. fragilis (n = 424, including 81 division II and 343 division I isolates), B. thetaiotaomicron (n = 111), B. ovatus (n = 53) and B. vulgatus (n = 46). Overall, metronidazole following by imipenem and amoxicillin-clavulanate are the most active agents with over 90% of all the isolates being susceptible at the tentative disc breakpoints. Susceptibility rates for moxifloxacin (69.5%), piperacillin-tazobactam (58.2%) and clindamycin (37.2%) were much lower. Metronidazole is the only agent active against >90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates. With the exception of B. fragilis division II, imipenem was active against 88.0%–98.3% of isolates of the other species. Susceptibility rates for clindamycin (14.4%–54.3%) and moxifloxacin (33.3%–80.6%) were low across all species and many isolates had no inhibition zone around the discs. E-test testing confirmed 8.2% (61/741) and 1.6% (12/741) isolates as nonsusceptible to imipenem and metronidazole, respectively with B. fragilis and B. thetaoiotaomicron accounting for a large share of the observed resistance to both agents. Two imipenem-resistant and one metronidazole-resistant B. dorei were misidentified as B. vulgatus by MALDI-TOF MS. These data highlights the importance anaerobic susceptibility testing in clinical laboratories to guide therapy.
•Resistance of Bacteroides fragilis group bacteria is linked to outcome.•Antimicrobial susceptibilities of 741 B. fragilis group bacteria were assessed.•Metronidazole is the only agent active against >90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates.•Except for B. fragilis division II, imipenem was active against 88.0%–98.3% of the other subgroups.•Susceptibility rates for clindamycin and moxifloxacin were low for many species within B. fragilis group.</description><subject>Anti-Bacterial Agents - pharmacology</subject><subject>Bacteroides - classification</subject><subject>Bacteroides - drug effects</subject><subject>Bacteroides - isolation & purification</subject><subject>Bacteroides dorei</subject><subject>Bacteroides fragilis</subject><subject>Bacteroides thetaoiotaomicron</subject><subject>Disk Diffusion Antimicrobial Tests</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Drug Resistance, Bacterial</subject><subject>Hong Kong</subject><subject>Humans</subject><subject>Imipenem resistance</subject><subject>Metronidazole resistance</subject><subject>Polymerase Chain Reaction</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization</subject><issn>1075-9964</issn><issn>1095-8274</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE9v3CAQxVHVqEm3_QoRx17sgg3Y3Lpd5Z8aqYckZwR4vGFlwxZwpD31q5fVJr3mMjPSvDcPfghdUlJTQsX3Xa29hhgM1A2hXU1YTQj_gC4okbzqm459PM4dr6QU7Bx9TmlHCKWM80_ovOkZZWV7gf6ufXazs-WS0xNOS7Kwz864yeUDDiP-qW0uOW6AhMeot2WR8DaGZY9D3Grv0pyw8_g2-C3-dSzmgPMz4Aw-6-xeAF89bdYPj3hwyZYyjktyweMZ8nMYvqCzUU8Jvr72FXq6vnrc3Fb3v2_uNuv7yraizxXjRFtCiJWjaSkFYzi1goqOd5a0hnWMWa4JkyC61nJmGtb2lHeSDkSMUrYr9O10dx_DnwVSVnN5DkyT9hCWpGjf91I0fbGvkDhJC5SUIoxqH92s40FRoo7w1U69wVdH-IowVeAX4-VrxmJmGP7b3mgXwY-TAMpPXxxElawDb2FwEWxWQ3DvZfwDEI2Z5g</recordid><startdate>201710</startdate><enddate>201710</enddate><creator>Ho, Pak-Leung</creator><creator>Yau, Chong-Yee</creator><creator>Ho, Lok-Yan</creator><creator>Lai, Eileen Ling-Yi</creator><creator>Liu, Melissa Chun-Jiao</creator><creator>Tse, Cindy Wing-Sze</creator><creator>Chow, Kin-Hung</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-8811-1308</orcidid><orcidid>https://orcid.org/0000-0003-3913-1887</orcidid></search><sort><creationdate>201710</creationdate><title>Antimicrobial susceptibility of Bacteroides fragilis group organisms in Hong Kong by the tentative EUCAST disc diffusion method</title><author>Ho, Pak-Leung ; Yau, Chong-Yee ; Ho, Lok-Yan ; Lai, Eileen Ling-Yi ; Liu, Melissa Chun-Jiao ; Tse, Cindy Wing-Sze ; Chow, Kin-Hung</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c368t-450ac000c9fb311ebb51c616757c03b4744c5a049e673c54b243815791d06f993</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Anti-Bacterial Agents - pharmacology</topic><topic>Bacteroides - classification</topic><topic>Bacteroides - drug effects</topic><topic>Bacteroides - isolation & purification</topic><topic>Bacteroides dorei</topic><topic>Bacteroides fragilis</topic><topic>Bacteroides thetaoiotaomicron</topic><topic>Disk Diffusion Antimicrobial Tests</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Drug Resistance, Bacterial</topic><topic>Hong Kong</topic><topic>Humans</topic><topic>Imipenem resistance</topic><topic>Metronidazole resistance</topic><topic>Polymerase Chain Reaction</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ho, Pak-Leung</creatorcontrib><creatorcontrib>Yau, Chong-Yee</creatorcontrib><creatorcontrib>Ho, Lok-Yan</creatorcontrib><creatorcontrib>Lai, Eileen Ling-Yi</creatorcontrib><creatorcontrib>Liu, Melissa Chun-Jiao</creatorcontrib><creatorcontrib>Tse, Cindy Wing-Sze</creatorcontrib><creatorcontrib>Chow, Kin-Hung</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Anaerobe</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ho, Pak-Leung</au><au>Yau, Chong-Yee</au><au>Ho, Lok-Yan</au><au>Lai, Eileen Ling-Yi</au><au>Liu, Melissa Chun-Jiao</au><au>Tse, Cindy Wing-Sze</au><au>Chow, Kin-Hung</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Antimicrobial susceptibility of Bacteroides fragilis group organisms in Hong Kong by the tentative EUCAST disc diffusion method</atitle><jtitle>Anaerobe</jtitle><addtitle>Anaerobe</addtitle><date>2017-10</date><risdate>2017</risdate><volume>47</volume><spage>51</spage><epage>56</epage><pages>51-56</pages><issn>1075-9964</issn><eissn>1095-8274</eissn><abstract>This study used a recently developed EUCAST disc diffusion method to measure the susceptibility of 741 B. fragilis group isolates to six antibiotics. Isolates nonsusceptible to imipenem and metronidazole by the disc method were further investigated by E-test. Species identification was obtained by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS), PCR assays and 16S rRNA sequencing. The most common species were B. fragilis (n = 424, including 81 division II and 343 division I isolates), B. thetaiotaomicron (n = 111), B. ovatus (n = 53) and B. vulgatus (n = 46). Overall, metronidazole following by imipenem and amoxicillin-clavulanate are the most active agents with over 90% of all the isolates being susceptible at the tentative disc breakpoints. Susceptibility rates for moxifloxacin (69.5%), piperacillin-tazobactam (58.2%) and clindamycin (37.2%) were much lower. Metronidazole is the only agent active against >90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates. With the exception of B. fragilis division II, imipenem was active against 88.0%–98.3% of isolates of the other species. Susceptibility rates for clindamycin (14.4%–54.3%) and moxifloxacin (33.3%–80.6%) were low across all species and many isolates had no inhibition zone around the discs. E-test testing confirmed 8.2% (61/741) and 1.6% (12/741) isolates as nonsusceptible to imipenem and metronidazole, respectively with B. fragilis and B. thetaoiotaomicron accounting for a large share of the observed resistance to both agents. Two imipenem-resistant and one metronidazole-resistant B. dorei were misidentified as B. vulgatus by MALDI-TOF MS. These data highlights the importance anaerobic susceptibility testing in clinical laboratories to guide therapy.
•Resistance of Bacteroides fragilis group bacteria is linked to outcome.•Antimicrobial susceptibilities of 741 B. fragilis group bacteria were assessed.•Metronidazole is the only agent active against >90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates.•Except for B. fragilis division II, imipenem was active against 88.0%–98.3% of the other subgroups.•Susceptibility rates for clindamycin and moxifloxacin were low for many species within B. fragilis group.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>28414107</pmid><doi>10.1016/j.anaerobe.2017.04.005</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0002-8811-1308</orcidid><orcidid>https://orcid.org/0000-0003-3913-1887</orcidid></addata></record> |
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subjects | Anti-Bacterial Agents - pharmacology Bacteroides - classification Bacteroides - drug effects Bacteroides - isolation & purification Bacteroides dorei Bacteroides fragilis Bacteroides thetaoiotaomicron Disk Diffusion Antimicrobial Tests DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Drug Resistance, Bacterial Hong Kong Humans Imipenem resistance Metronidazole resistance Polymerase Chain Reaction RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization |
title | Antimicrobial susceptibility of Bacteroides fragilis group organisms in Hong Kong by the tentative EUCAST disc diffusion method |
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