Antimicrobial susceptibility of Bacteroides fragilis group organisms in Hong Kong by the tentative EUCAST disc diffusion method

This study used a recently developed EUCAST disc diffusion method to measure the susceptibility of 741 B. fragilis group isolates to six antibiotics. Isolates nonsusceptible to imipenem and metronidazole by the disc method were further investigated by E-test. Species identification was obtained by m...

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Veröffentlicht in:Anaerobe 2017-10, Vol.47, p.51-56
Hauptverfasser: Ho, Pak-Leung, Yau, Chong-Yee, Ho, Lok-Yan, Lai, Eileen Ling-Yi, Liu, Melissa Chun-Jiao, Tse, Cindy Wing-Sze, Chow, Kin-Hung
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container_title Anaerobe
container_volume 47
creator Ho, Pak-Leung
Yau, Chong-Yee
Ho, Lok-Yan
Lai, Eileen Ling-Yi
Liu, Melissa Chun-Jiao
Tse, Cindy Wing-Sze
Chow, Kin-Hung
description This study used a recently developed EUCAST disc diffusion method to measure the susceptibility of 741 B. fragilis group isolates to six antibiotics. Isolates nonsusceptible to imipenem and metronidazole by the disc method were further investigated by E-test. Species identification was obtained by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS), PCR assays and 16S rRNA sequencing. The most common species were B. fragilis (n = 424, including 81 division II and 343 division I isolates), B. thetaiotaomicron (n = 111), B. ovatus (n = 53) and B. vulgatus (n = 46). Overall, metronidazole following by imipenem and amoxicillin-clavulanate are the most active agents with over 90% of all the isolates being susceptible at the tentative disc breakpoints. Susceptibility rates for moxifloxacin (69.5%), piperacillin-tazobactam (58.2%) and clindamycin (37.2%) were much lower. Metronidazole is the only agent active against >90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates. With the exception of B. fragilis division II, imipenem was active against 88.0%–98.3% of isolates of the other species. Susceptibility rates for clindamycin (14.4%–54.3%) and moxifloxacin (33.3%–80.6%) were low across all species and many isolates had no inhibition zone around the discs. E-test testing confirmed 8.2% (61/741) and 1.6% (12/741) isolates as nonsusceptible to imipenem and metronidazole, respectively with B. fragilis and B. thetaoiotaomicron accounting for a large share of the observed resistance to both agents. Two imipenem-resistant and one metronidazole-resistant B. dorei were misidentified as B. vulgatus by MALDI-TOF MS. These data highlights the importance anaerobic susceptibility testing in clinical laboratories to guide therapy. •Resistance of Bacteroides fragilis group bacteria is linked to outcome.•Antimicrobial susceptibilities of 741 B. fragilis group bacteria were assessed.•Metronidazole is the only agent active against >90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates.•Except for B. fragilis division II, imipenem was active against 88.0%–98.3% of the other subgroups.•Susceptibility rates for clindamycin and moxifloxacin were low for many species within B. fragilis group.
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Isolates nonsusceptible to imipenem and metronidazole by the disc method were further investigated by E-test. Species identification was obtained by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS), PCR assays and 16S rRNA sequencing. The most common species were B. fragilis (n = 424, including 81 division II and 343 division I isolates), B. thetaiotaomicron (n = 111), B. ovatus (n = 53) and B. vulgatus (n = 46). Overall, metronidazole following by imipenem and amoxicillin-clavulanate are the most active agents with over 90% of all the isolates being susceptible at the tentative disc breakpoints. Susceptibility rates for moxifloxacin (69.5%), piperacillin-tazobactam (58.2%) and clindamycin (37.2%) were much lower. Metronidazole is the only agent active against &gt;90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates. With the exception of B. fragilis division II, imipenem was active against 88.0%–98.3% of isolates of the other species. Susceptibility rates for clindamycin (14.4%–54.3%) and moxifloxacin (33.3%–80.6%) were low across all species and many isolates had no inhibition zone around the discs. E-test testing confirmed 8.2% (61/741) and 1.6% (12/741) isolates as nonsusceptible to imipenem and metronidazole, respectively with B. fragilis and B. thetaoiotaomicron accounting for a large share of the observed resistance to both agents. Two imipenem-resistant and one metronidazole-resistant B. dorei were misidentified as B. vulgatus by MALDI-TOF MS. These data highlights the importance anaerobic susceptibility testing in clinical laboratories to guide therapy. •Resistance of Bacteroides fragilis group bacteria is linked to outcome.•Antimicrobial susceptibilities of 741 B. fragilis group bacteria were assessed.•Metronidazole is the only agent active against &gt;90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates.•Except for B. fragilis division II, imipenem was active against 88.0%–98.3% of the other subgroups.•Susceptibility rates for clindamycin and moxifloxacin were low for many species within B. fragilis group.</description><identifier>ISSN: 1075-9964</identifier><identifier>EISSN: 1095-8274</identifier><identifier>DOI: 10.1016/j.anaerobe.2017.04.005</identifier><identifier>PMID: 28414107</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Anti-Bacterial Agents - pharmacology ; Bacteroides - classification ; Bacteroides - drug effects ; Bacteroides - isolation &amp; purification ; Bacteroides dorei ; Bacteroides fragilis ; Bacteroides thetaoiotaomicron ; Disk Diffusion Antimicrobial Tests ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Drug Resistance, Bacterial ; Hong Kong ; Humans ; Imipenem resistance ; Metronidazole resistance ; Polymerase Chain Reaction ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization</subject><ispartof>Anaerobe, 2017-10, Vol.47, p.51-56</ispartof><rights>2017 Elsevier Ltd</rights><rights>Copyright © 2017 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c368t-450ac000c9fb311ebb51c616757c03b4744c5a049e673c54b243815791d06f993</citedby><cites>FETCH-LOGICAL-c368t-450ac000c9fb311ebb51c616757c03b4744c5a049e673c54b243815791d06f993</cites><orcidid>0000-0002-8811-1308 ; 0000-0003-3913-1887</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.anaerobe.2017.04.005$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>315,781,785,3551,27929,27930,46000</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28414107$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ho, Pak-Leung</creatorcontrib><creatorcontrib>Yau, Chong-Yee</creatorcontrib><creatorcontrib>Ho, Lok-Yan</creatorcontrib><creatorcontrib>Lai, Eileen Ling-Yi</creatorcontrib><creatorcontrib>Liu, Melissa Chun-Jiao</creatorcontrib><creatorcontrib>Tse, Cindy Wing-Sze</creatorcontrib><creatorcontrib>Chow, Kin-Hung</creatorcontrib><title>Antimicrobial susceptibility of Bacteroides fragilis group organisms in Hong Kong by the tentative EUCAST disc diffusion method</title><title>Anaerobe</title><addtitle>Anaerobe</addtitle><description>This study used a recently developed EUCAST disc diffusion method to measure the susceptibility of 741 B. fragilis group isolates to six antibiotics. Isolates nonsusceptible to imipenem and metronidazole by the disc method were further investigated by E-test. Species identification was obtained by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS), PCR assays and 16S rRNA sequencing. The most common species were B. fragilis (n = 424, including 81 division II and 343 division I isolates), B. thetaiotaomicron (n = 111), B. ovatus (n = 53) and B. vulgatus (n = 46). Overall, metronidazole following by imipenem and amoxicillin-clavulanate are the most active agents with over 90% of all the isolates being susceptible at the tentative disc breakpoints. Susceptibility rates for moxifloxacin (69.5%), piperacillin-tazobactam (58.2%) and clindamycin (37.2%) were much lower. Metronidazole is the only agent active against &gt;90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates. With the exception of B. fragilis division II, imipenem was active against 88.0%–98.3% of isolates of the other species. Susceptibility rates for clindamycin (14.4%–54.3%) and moxifloxacin (33.3%–80.6%) were low across all species and many isolates had no inhibition zone around the discs. E-test testing confirmed 8.2% (61/741) and 1.6% (12/741) isolates as nonsusceptible to imipenem and metronidazole, respectively with B. fragilis and B. thetaoiotaomicron accounting for a large share of the observed resistance to both agents. Two imipenem-resistant and one metronidazole-resistant B. dorei were misidentified as B. vulgatus by MALDI-TOF MS. These data highlights the importance anaerobic susceptibility testing in clinical laboratories to guide therapy. •Resistance of Bacteroides fragilis group bacteria is linked to outcome.•Antimicrobial susceptibilities of 741 B. fragilis group bacteria were assessed.•Metronidazole is the only agent active against &gt;90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates.•Except for B. fragilis division II, imipenem was active against 88.0%–98.3% of the other subgroups.•Susceptibility rates for clindamycin and moxifloxacin were low for many species within B. fragilis group.</description><subject>Anti-Bacterial Agents - pharmacology</subject><subject>Bacteroides - classification</subject><subject>Bacteroides - drug effects</subject><subject>Bacteroides - isolation &amp; purification</subject><subject>Bacteroides dorei</subject><subject>Bacteroides fragilis</subject><subject>Bacteroides thetaoiotaomicron</subject><subject>Disk Diffusion Antimicrobial Tests</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Drug Resistance, Bacterial</subject><subject>Hong Kong</subject><subject>Humans</subject><subject>Imipenem resistance</subject><subject>Metronidazole resistance</subject><subject>Polymerase Chain Reaction</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization</subject><issn>1075-9964</issn><issn>1095-8274</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE9v3CAQxVHVqEm3_QoRx17sgg3Y3Lpd5Z8aqYckZwR4vGFlwxZwpD31q5fVJr3mMjPSvDcPfghdUlJTQsX3Xa29hhgM1A2hXU1YTQj_gC4okbzqm459PM4dr6QU7Bx9TmlHCKWM80_ovOkZZWV7gf6ufXazs-WS0xNOS7Kwz864yeUDDiP-qW0uOW6AhMeot2WR8DaGZY9D3Grv0pyw8_g2-C3-dSzmgPMz4Aw-6-xeAF89bdYPj3hwyZYyjktyweMZ8nMYvqCzUU8Jvr72FXq6vnrc3Fb3v2_uNuv7yraizxXjRFtCiJWjaSkFYzi1goqOd5a0hnWMWa4JkyC61nJmGtb2lHeSDkSMUrYr9O10dx_DnwVSVnN5DkyT9hCWpGjf91I0fbGvkDhJC5SUIoxqH92s40FRoo7w1U69wVdH-IowVeAX4-VrxmJmGP7b3mgXwY-TAMpPXxxElawDb2FwEWxWQ3DvZfwDEI2Z5g</recordid><startdate>201710</startdate><enddate>201710</enddate><creator>Ho, Pak-Leung</creator><creator>Yau, Chong-Yee</creator><creator>Ho, Lok-Yan</creator><creator>Lai, Eileen Ling-Yi</creator><creator>Liu, Melissa Chun-Jiao</creator><creator>Tse, Cindy Wing-Sze</creator><creator>Chow, Kin-Hung</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-8811-1308</orcidid><orcidid>https://orcid.org/0000-0003-3913-1887</orcidid></search><sort><creationdate>201710</creationdate><title>Antimicrobial susceptibility of Bacteroides fragilis group organisms in Hong Kong by the tentative EUCAST disc diffusion method</title><author>Ho, Pak-Leung ; 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Isolates nonsusceptible to imipenem and metronidazole by the disc method were further investigated by E-test. Species identification was obtained by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS), PCR assays and 16S rRNA sequencing. The most common species were B. fragilis (n = 424, including 81 division II and 343 division I isolates), B. thetaiotaomicron (n = 111), B. ovatus (n = 53) and B. vulgatus (n = 46). Overall, metronidazole following by imipenem and amoxicillin-clavulanate are the most active agents with over 90% of all the isolates being susceptible at the tentative disc breakpoints. Susceptibility rates for moxifloxacin (69.5%), piperacillin-tazobactam (58.2%) and clindamycin (37.2%) were much lower. Metronidazole is the only agent active against &gt;90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates. With the exception of B. fragilis division II, imipenem was active against 88.0%–98.3% of isolates of the other species. Susceptibility rates for clindamycin (14.4%–54.3%) and moxifloxacin (33.3%–80.6%) were low across all species and many isolates had no inhibition zone around the discs. E-test testing confirmed 8.2% (61/741) and 1.6% (12/741) isolates as nonsusceptible to imipenem and metronidazole, respectively with B. fragilis and B. thetaoiotaomicron accounting for a large share of the observed resistance to both agents. Two imipenem-resistant and one metronidazole-resistant B. dorei were misidentified as B. vulgatus by MALDI-TOF MS. These data highlights the importance anaerobic susceptibility testing in clinical laboratories to guide therapy. •Resistance of Bacteroides fragilis group bacteria is linked to outcome.•Antimicrobial susceptibilities of 741 B. fragilis group bacteria were assessed.•Metronidazole is the only agent active against &gt;90% of B. fragilis, non-fragilis Bacteroides and Parabacteroides isolates.•Except for B. fragilis division II, imipenem was active against 88.0%–98.3% of the other subgroups.•Susceptibility rates for clindamycin and moxifloxacin were low for many species within B. fragilis group.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>28414107</pmid><doi>10.1016/j.anaerobe.2017.04.005</doi><tpages>6</tpages><orcidid>https://orcid.org/0000-0002-8811-1308</orcidid><orcidid>https://orcid.org/0000-0003-3913-1887</orcidid></addata></record>
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subjects Anti-Bacterial Agents - pharmacology
Bacteroides - classification
Bacteroides - drug effects
Bacteroides - isolation & purification
Bacteroides dorei
Bacteroides fragilis
Bacteroides thetaoiotaomicron
Disk Diffusion Antimicrobial Tests
DNA, Bacterial - chemistry
DNA, Bacterial - genetics
DNA, Ribosomal - chemistry
DNA, Ribosomal - genetics
Drug Resistance, Bacterial
Hong Kong
Humans
Imipenem resistance
Metronidazole resistance
Polymerase Chain Reaction
RNA, Ribosomal, 16S - genetics
Sequence Analysis, DNA
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
title Antimicrobial susceptibility of Bacteroides fragilis group organisms in Hong Kong by the tentative EUCAST disc diffusion method
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