Laplace deconvolution on the basis of time domain data and its application to dynamic contrast-enhanced imaging
We consider the problem of Laplace deconvolution with noisy discrete non-equally spaced observations on a finite time interval. We propose a new method for Laplace deconvolution which is based on expansions of the convolution kernel, the unknown function and the observed signal over a Laguerre funct...
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Veröffentlicht in: | Journal of the Royal Statistical Society. Series B, Statistical methodology Statistical methodology, 2017-01, Vol.79 (1), p.69-94 |
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description | We consider the problem of Laplace deconvolution with noisy discrete non-equally spaced observations on a finite time interval. We propose a new method for Laplace deconvolution which is based on expansions of the convolution kernel, the unknown function and the observed signal over a Laguerre functions basis (which acts as a surrogate eigenfunction basis of the Laplace convolution operator) using a regression setting. The expansion results in a small system of linear equations with the matrix of the system being triangular and Toeplitz. Because of this triangular structure, there is a common number m of terms in the function expansions to control, which is realized via a complexity penalty. The advantage of this methodology is that it leads to very fast computations, produces no boundary effects due to extension at zero and cut-off at T and provides an estimator with the risk within a logarithmic factor of m of the oracle risk. We emphasize that we consider the true observational model with possibly non-equispaced observations which are available on a finite interval of length T which appears in many different contexts, and we account for the bias associated with this model (which is not present in the case T → ∞). The study is motivated by perfusion imaging using a short injection of contrast agent, a procedure which is applied for medical assessment of microcirculation within tissues such as cancerous tumours. The presence of a tuning parameter a allows the choice of the most advantageous time units, so that both the kernel and the unknown right-hand side of the equation are well represented for the deconvolution. The methodology is illustrated by an extensive simulation study and a real data example which confirms that the technique proposed is fast, efficient, accurate, usable from a practical point of view and very competitive. |
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We propose a new method for Laplace deconvolution which is based on expansions of the convolution kernel, the unknown function and the observed signal over a Laguerre functions basis (which acts as a surrogate eigenfunction basis of the Laplace convolution operator) using a regression setting. The expansion results in a small system of linear equations with the matrix of the system being triangular and Toeplitz. Because of this triangular structure, there is a common number m of terms in the function expansions to control, which is realized via a complexity penalty. The advantage of this methodology is that it leads to very fast computations, produces no boundary effects due to extension at zero and cut-off at T and provides an estimator with the risk within a logarithmic factor of m of the oracle risk. We emphasize that we consider the true observational model with possibly non-equispaced observations which are available on a finite interval of length T which appears in many different contexts, and we account for the bias associated with this model (which is not present in the case T → ∞). The study is motivated by perfusion imaging using a short injection of contrast agent, a procedure which is applied for medical assessment of microcirculation within tissues such as cancerous tumours. The presence of a tuning parameter a allows the choice of the most advantageous time units, so that both the kernel and the unknown right-hand side of the equation are well represented for the deconvolution. The methodology is illustrated by an extensive simulation study and a real data example which confirms that the technique proposed is fast, efficient, accurate, usable from a practical point of view and very competitive.</description><identifier>ISSN: 1369-7412</identifier><identifier>EISSN: 1467-9868</identifier><identifier>DOI: 10.1111/rssb.12159</identifier><language>eng</language><publisher>Oxford: John Wiley & Sons Ltd</publisher><subject>Analysis ; Complexity penalty ; Convolution ; Deconvolution ; Dynamic contrast‐enhanced imaging ; Imaging ; Intervals ; Laplace deconvolution ; Laplace transforms ; LaplaceDeconv R package ; Mathematical analysis ; Mathematical models ; Methodology ; Model selection ; Perfusion imaging ; Regression analysis ; Risk ; Statistics ; Studies</subject><ispartof>Journal of the Royal Statistical Society. 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Series B, Statistical methodology</title><description>We consider the problem of Laplace deconvolution with noisy discrete non-equally spaced observations on a finite time interval. We propose a new method for Laplace deconvolution which is based on expansions of the convolution kernel, the unknown function and the observed signal over a Laguerre functions basis (which acts as a surrogate eigenfunction basis of the Laplace convolution operator) using a regression setting. The expansion results in a small system of linear equations with the matrix of the system being triangular and Toeplitz. Because of this triangular structure, there is a common number m of terms in the function expansions to control, which is realized via a complexity penalty. The advantage of this methodology is that it leads to very fast computations, produces no boundary effects due to extension at zero and cut-off at T and provides an estimator with the risk within a logarithmic factor of m of the oracle risk. We emphasize that we consider the true observational model with possibly non-equispaced observations which are available on a finite interval of length T which appears in many different contexts, and we account for the bias associated with this model (which is not present in the case T → ∞). The study is motivated by perfusion imaging using a short injection of contrast agent, a procedure which is applied for medical assessment of microcirculation within tissues such as cancerous tumours. The presence of a tuning parameter a allows the choice of the most advantageous time units, so that both the kernel and the unknown right-hand side of the equation are well represented for the deconvolution. The methodology is illustrated by an extensive simulation study and a real data example which confirms that the technique proposed is fast, efficient, accurate, usable from a practical point of view and very competitive.</description><subject>Analysis</subject><subject>Complexity penalty</subject><subject>Convolution</subject><subject>Deconvolution</subject><subject>Dynamic contrast‐enhanced imaging</subject><subject>Imaging</subject><subject>Intervals</subject><subject>Laplace deconvolution</subject><subject>Laplace transforms</subject><subject>LaplaceDeconv R package</subject><subject>Mathematical analysis</subject><subject>Mathematical models</subject><subject>Methodology</subject><subject>Model selection</subject><subject>Perfusion imaging</subject><subject>Regression analysis</subject><subject>Risk</subject><subject>Statistics</subject><subject>Studies</subject><issn>1369-7412</issn><issn>1467-9868</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNp90EtLxDAQB_AiCq6Pi3ch4EWEatKmaXLUxRcsCD7OZZombpY2qUlW2W9v3FUPHhwCyeH3HyaTZUcEn5NUFz6E9pwUpBJb2YRQVueCM76d3iUTeU1JsZvthbDAqVhdTjI3g7EHqVCnpLPvrl9G4yxKJ84VaiGYgJxG0QyJuAGMRR1EQGA7ZGJAMI69kbAORYe6lYXBSJR6RQ8h5srOwUqV8ACvxr4eZDsa-qAOv-_97OXm-nl6l88ebu-nl7Nc0qISuZYVJbqikivWghCt5BIrXlW0Lbu2VqKtJAbAuGYaSy2FEJopTDWlBel4Xe5np5u-o3dvSxViM5ggVd-DVW4ZGsI5xgUVmCd68ocu3NLbNF1SFa1ZSRhJ6myjpHcheKWb0ac_-VVDcPO1--Zr98169wmTDf4wvVr9I5vHp6ern8zxJrMI0fnfDKWMkzRD-QkIi5Gp</recordid><startdate>20170101</startdate><enddate>20170101</enddate><creator>Comte, Fabienne</creator><creator>Cuenod, Charles-A.</creator><creator>Pensky, Marianna</creator><creator>Rozenholc, Yves</creator><general>John Wiley & Sons Ltd</general><general>Oxford University Press</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7SC</scope><scope>8BJ</scope><scope>8FD</scope><scope>FQK</scope><scope>JBE</scope><scope>JQ2</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope></search><sort><creationdate>20170101</creationdate><title>Laplace deconvolution on the basis of time domain data and its application to dynamic contrast-enhanced imaging</title><author>Comte, Fabienne ; Cuenod, Charles-A. ; Pensky, Marianna ; Rozenholc, Yves</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4259-fc541f54c8e6ba99bc8c0e8554b3db7e9b5c0aa0076f0cfc999f6e04f4421d873</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Analysis</topic><topic>Complexity penalty</topic><topic>Convolution</topic><topic>Deconvolution</topic><topic>Dynamic contrast‐enhanced imaging</topic><topic>Imaging</topic><topic>Intervals</topic><topic>Laplace deconvolution</topic><topic>Laplace transforms</topic><topic>LaplaceDeconv R package</topic><topic>Mathematical analysis</topic><topic>Mathematical models</topic><topic>Methodology</topic><topic>Model selection</topic><topic>Perfusion imaging</topic><topic>Regression analysis</topic><topic>Risk</topic><topic>Statistics</topic><topic>Studies</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Comte, Fabienne</creatorcontrib><creatorcontrib>Cuenod, Charles-A.</creatorcontrib><creatorcontrib>Pensky, Marianna</creatorcontrib><creatorcontrib>Rozenholc, Yves</creatorcontrib><collection>CrossRef</collection><collection>Computer and Information Systems Abstracts</collection><collection>International Bibliography of the Social Sciences (IBSS)</collection><collection>Technology Research Database</collection><collection>International Bibliography of the Social Sciences</collection><collection>International Bibliography of the Social Sciences</collection><collection>ProQuest Computer Science Collection</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><jtitle>Journal of the Royal Statistical Society. Series B, Statistical methodology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Comte, Fabienne</au><au>Cuenod, Charles-A.</au><au>Pensky, Marianna</au><au>Rozenholc, Yves</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Laplace deconvolution on the basis of time domain data and its application to dynamic contrast-enhanced imaging</atitle><jtitle>Journal of the Royal Statistical Society. Series B, Statistical methodology</jtitle><date>2017-01-01</date><risdate>2017</risdate><volume>79</volume><issue>1</issue><spage>69</spage><epage>94</epage><pages>69-94</pages><issn>1369-7412</issn><eissn>1467-9868</eissn><abstract>We consider the problem of Laplace deconvolution with noisy discrete non-equally spaced observations on a finite time interval. We propose a new method for Laplace deconvolution which is based on expansions of the convolution kernel, the unknown function and the observed signal over a Laguerre functions basis (which acts as a surrogate eigenfunction basis of the Laplace convolution operator) using a regression setting. The expansion results in a small system of linear equations with the matrix of the system being triangular and Toeplitz. Because of this triangular structure, there is a common number m of terms in the function expansions to control, which is realized via a complexity penalty. The advantage of this methodology is that it leads to very fast computations, produces no boundary effects due to extension at zero and cut-off at T and provides an estimator with the risk within a logarithmic factor of m of the oracle risk. We emphasize that we consider the true observational model with possibly non-equispaced observations which are available on a finite interval of length T which appears in many different contexts, and we account for the bias associated with this model (which is not present in the case T → ∞). The study is motivated by perfusion imaging using a short injection of contrast agent, a procedure which is applied for medical assessment of microcirculation within tissues such as cancerous tumours. The presence of a tuning parameter a allows the choice of the most advantageous time units, so that both the kernel and the unknown right-hand side of the equation are well represented for the deconvolution. The methodology is illustrated by an extensive simulation study and a real data example which confirms that the technique proposed is fast, efficient, accurate, usable from a practical point of view and very competitive.</abstract><cop>Oxford</cop><pub>John Wiley & Sons Ltd</pub><doi>10.1111/rssb.12159</doi><tpages>26</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Analysis Complexity penalty Convolution Deconvolution Dynamic contrast‐enhanced imaging Imaging Intervals Laplace deconvolution Laplace transforms LaplaceDeconv R package Mathematical analysis Mathematical models Methodology Model selection Perfusion imaging Regression analysis Risk Statistics Studies |
title | Laplace deconvolution on the basis of time domain data and its application to dynamic contrast-enhanced imaging |
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