An expanded genetic code for probing the role of electrostatics in enzyme catalysis by vibrational Stark spectroscopy
To find experimental validation for electrostatic interactions essential for catalytic reactions represents a challenge due to practical limitations in assessing electric fields within protein structures. This review examines the applications of non-canonical amino acids (ncAAs) as genetically encod...
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Veröffentlicht in: | Biochimica et biophysica acta. General subjects 2017-11, Vol.1861 (11), p.3053-3059 |
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container_title | Biochimica et biophysica acta. General subjects |
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creator | Völler, Jan-Stefan Biava, Hernan Hildebrandt, Peter Budisa, Nediljko |
description | To find experimental validation for electrostatic interactions essential for catalytic reactions represents a challenge due to practical limitations in assessing electric fields within protein structures.
This review examines the applications of non-canonical amino acids (ncAAs) as genetically encoded probes for studying the role of electrostatic interactions in enzyme catalysis.
ncAAs constitute sensitive spectroscopic probes to detect local electric fields by exploiting the vibrational Stark effect (VSE) and thus have the potential to map the protein electrostatics.
Mapping the electrostatics in proteins will improve our understanding of natural catalytic processes and, in beyond, will be helpful for biocatalyst engineering. This article is part of a Special Issue entitled “Biochemistry of Synthetic Biology - Recent Developments” Guest Editor: Dr. Ilka Heinemann and Dr. Patrick O'Donoghue.
[Display omitted]
•Enzyme electrostatics have a great impact on catalytic reactions.•Strong evidence for this concept is provided on the basis of VSS.•Genetically encoded VSE-active ncAAs substantially broaden the potential of VSS.•VSS with ncAAs enables studying the role of global electrostatics in biocatalysis. |
doi_str_mv | 10.1016/j.bbagen.2017.02.009 |
format | Article |
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This review examines the applications of non-canonical amino acids (ncAAs) as genetically encoded probes for studying the role of electrostatic interactions in enzyme catalysis.
ncAAs constitute sensitive spectroscopic probes to detect local electric fields by exploiting the vibrational Stark effect (VSE) and thus have the potential to map the protein electrostatics.
Mapping the electrostatics in proteins will improve our understanding of natural catalytic processes and, in beyond, will be helpful for biocatalyst engineering. This article is part of a Special Issue entitled “Biochemistry of Synthetic Biology - Recent Developments” Guest Editor: Dr. Ilka Heinemann and Dr. Patrick O'Donoghue.
[Display omitted]
•Enzyme electrostatics have a great impact on catalytic reactions.•Strong evidence for this concept is provided on the basis of VSS.•Genetically encoded VSE-active ncAAs substantially broaden the potential of VSS.•VSS with ncAAs enables studying the role of global electrostatics in biocatalysis.</description><identifier>ISSN: 0304-4165</identifier><identifier>EISSN: 1872-8006</identifier><identifier>DOI: 10.1016/j.bbagen.2017.02.009</identifier><identifier>PMID: 28229928</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Catalysis ; Electric fields ; Enzyme catalysis ; Enzyme electrostatics ; Genetic Code ; Molecular Dynamics Simulation ; Non-canonical amino acids ; Protein Engineering - methods ; Proteins - chemistry ; Proteins - genetics ; Proteins - metabolism ; Spectrum Analysis - methods ; Static Electricity ; Vibration ; Vibrational Stark spectroscopy</subject><ispartof>Biochimica et biophysica acta. General subjects, 2017-11, Vol.1861 (11), p.3053-3059</ispartof><rights>2017 Elsevier B.V.</rights><rights>Copyright © 2017 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c362t-124ffd89f61086dd4f34599b63f2f64cecb3c7cdcef75fbdf8efa5e0bd67bb3c3</citedby><cites>FETCH-LOGICAL-c362t-124ffd89f61086dd4f34599b63f2f64cecb3c7cdcef75fbdf8efa5e0bd67bb3c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.bbagen.2017.02.009$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3541,27915,27916,45986</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28229928$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Völler, Jan-Stefan</creatorcontrib><creatorcontrib>Biava, Hernan</creatorcontrib><creatorcontrib>Hildebrandt, Peter</creatorcontrib><creatorcontrib>Budisa, Nediljko</creatorcontrib><title>An expanded genetic code for probing the role of electrostatics in enzyme catalysis by vibrational Stark spectroscopy</title><title>Biochimica et biophysica acta. General subjects</title><addtitle>Biochim Biophys Acta Gen Subj</addtitle><description>To find experimental validation for electrostatic interactions essential for catalytic reactions represents a challenge due to practical limitations in assessing electric fields within protein structures.
This review examines the applications of non-canonical amino acids (ncAAs) as genetically encoded probes for studying the role of electrostatic interactions in enzyme catalysis.
ncAAs constitute sensitive spectroscopic probes to detect local electric fields by exploiting the vibrational Stark effect (VSE) and thus have the potential to map the protein electrostatics.
Mapping the electrostatics in proteins will improve our understanding of natural catalytic processes and, in beyond, will be helpful for biocatalyst engineering. This article is part of a Special Issue entitled “Biochemistry of Synthetic Biology - Recent Developments” Guest Editor: Dr. Ilka Heinemann and Dr. Patrick O'Donoghue.
[Display omitted]
•Enzyme electrostatics have a great impact on catalytic reactions.•Strong evidence for this concept is provided on the basis of VSS.•Genetically encoded VSE-active ncAAs substantially broaden the potential of VSS.•VSS with ncAAs enables studying the role of global electrostatics in biocatalysis.</description><subject>Catalysis</subject><subject>Electric fields</subject><subject>Enzyme catalysis</subject><subject>Enzyme electrostatics</subject><subject>Genetic Code</subject><subject>Molecular Dynamics Simulation</subject><subject>Non-canonical amino acids</subject><subject>Protein Engineering - methods</subject><subject>Proteins - chemistry</subject><subject>Proteins - genetics</subject><subject>Proteins - metabolism</subject><subject>Spectrum Analysis - methods</subject><subject>Static Electricity</subject><subject>Vibration</subject><subject>Vibrational Stark spectroscopy</subject><issn>0304-4165</issn><issn>1872-8006</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kMtO5DAQRS3ECJrHHyDkJZtkbMdxkg0SQrwkpFnMzNryowxu0nGw02jC149bAZbUxos6t8p1EDqjpKSEip_rUmv1BEPJCG1KwkpCuj20om3DipYQsY9WpCK84FTUh-gopTXJVXf1ATpkLWNdx9oV2l4NGP6NarBgcZ4GkzfYBAvYhYjHGLQfnvD0DDiGHnBwGHowUwxpUhlN2Of88D5vABs1qX5OPmE94zevYwbCoHr8e1LxBadxyZkwzifoh1N9gtOP9xj9vb35c31fPP66e7i-eixMJdhUUMads23nBCWtsJa7itddp0XlmBPcgNGVaYw14JraaetacKoGoq1odG5Vx-himZsPed1CmuTGJwN9rwYI2ySzLFrXnDcko3xBTf5jiuDkGP1GxVlSInfC5VouwuVOuCRMZuE5dv6xYas3YL9Cn4YzcLkAkO988xBlMh4GA9bHLETa4L_f8B_kYJcS</recordid><startdate>201711</startdate><enddate>201711</enddate><creator>Völler, Jan-Stefan</creator><creator>Biava, Hernan</creator><creator>Hildebrandt, Peter</creator><creator>Budisa, Nediljko</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>201711</creationdate><title>An expanded genetic code for probing the role of electrostatics in enzyme catalysis by vibrational Stark spectroscopy</title><author>Völler, Jan-Stefan ; Biava, Hernan ; Hildebrandt, Peter ; Budisa, Nediljko</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c362t-124ffd89f61086dd4f34599b63f2f64cecb3c7cdcef75fbdf8efa5e0bd67bb3c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Catalysis</topic><topic>Electric fields</topic><topic>Enzyme catalysis</topic><topic>Enzyme electrostatics</topic><topic>Genetic Code</topic><topic>Molecular Dynamics Simulation</topic><topic>Non-canonical amino acids</topic><topic>Protein Engineering - methods</topic><topic>Proteins - chemistry</topic><topic>Proteins - genetics</topic><topic>Proteins - metabolism</topic><topic>Spectrum Analysis - methods</topic><topic>Static Electricity</topic><topic>Vibration</topic><topic>Vibrational Stark spectroscopy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Völler, Jan-Stefan</creatorcontrib><creatorcontrib>Biava, Hernan</creatorcontrib><creatorcontrib>Hildebrandt, Peter</creatorcontrib><creatorcontrib>Budisa, Nediljko</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Biochimica et biophysica acta. General subjects</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Völler, Jan-Stefan</au><au>Biava, Hernan</au><au>Hildebrandt, Peter</au><au>Budisa, Nediljko</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>An expanded genetic code for probing the role of electrostatics in enzyme catalysis by vibrational Stark spectroscopy</atitle><jtitle>Biochimica et biophysica acta. General subjects</jtitle><addtitle>Biochim Biophys Acta Gen Subj</addtitle><date>2017-11</date><risdate>2017</risdate><volume>1861</volume><issue>11</issue><spage>3053</spage><epage>3059</epage><pages>3053-3059</pages><issn>0304-4165</issn><eissn>1872-8006</eissn><abstract>To find experimental validation for electrostatic interactions essential for catalytic reactions represents a challenge due to practical limitations in assessing electric fields within protein structures.
This review examines the applications of non-canonical amino acids (ncAAs) as genetically encoded probes for studying the role of electrostatic interactions in enzyme catalysis.
ncAAs constitute sensitive spectroscopic probes to detect local electric fields by exploiting the vibrational Stark effect (VSE) and thus have the potential to map the protein electrostatics.
Mapping the electrostatics in proteins will improve our understanding of natural catalytic processes and, in beyond, will be helpful for biocatalyst engineering. This article is part of a Special Issue entitled “Biochemistry of Synthetic Biology - Recent Developments” Guest Editor: Dr. Ilka Heinemann and Dr. Patrick O'Donoghue.
[Display omitted]
•Enzyme electrostatics have a great impact on catalytic reactions.•Strong evidence for this concept is provided on the basis of VSS.•Genetically encoded VSE-active ncAAs substantially broaden the potential of VSS.•VSS with ncAAs enables studying the role of global electrostatics in biocatalysis.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>28229928</pmid><doi>10.1016/j.bbagen.2017.02.009</doi><tpages>7</tpages></addata></record> |
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source | MEDLINE; ScienceDirect Journals (5 years ago - present) |
subjects | Catalysis Electric fields Enzyme catalysis Enzyme electrostatics Genetic Code Molecular Dynamics Simulation Non-canonical amino acids Protein Engineering - methods Proteins - chemistry Proteins - genetics Proteins - metabolism Spectrum Analysis - methods Static Electricity Vibration Vibrational Stark spectroscopy |
title | An expanded genetic code for probing the role of electrostatics in enzyme catalysis by vibrational Stark spectroscopy |
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