Computational study of Th(4+) and Np(4+) hydration and hydrolysis of Th(4+) from first principles
The aqueous solvation of Th and Np in the IV oxidation state was examined using cluster models generated by Monte Carlo simulations and density functional theory embedded within the COSMO continuum model to approximate the effect of bulk water. Our results suggest that the coordination number (CN) f...
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Veröffentlicht in: | Journal of molecular modeling 2017-03, Vol.23 (3), p.69-69 |
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creator | Amador, Davi H T Sambrano, Julio R Gargano, Ricardo de Macedo, Luiz Guilherme M |
description | The aqueous solvation of Th and Np in the IV oxidation state was examined using cluster models generated by Monte Carlo simulations and density functional theory embedded within the COSMO continuum model to approximate the effect of bulk water. Our results suggest that the coordination number (CN) for both Th(IV) and NP(IV) should be 9, in accordance to some experimental and theoretical results from the literature. The structural values for average oxygen-metal distances are within 0.01 Å compared to experimental data, and also within the experimental error. The calculated ΔG
are in very good agreement with experimental reported values, with deviations at CN = 9 lower than 1% for both Th(IV) and Np(IV). The hydrolysis constants are also in very good agreement with experimental values. Finally, this [corrected] methodology has the advantage of using a GGA functional (BP86) that not only makes the calculations more affordable computationally than hybrid functional or ab initio molecular dynamics simulations (Car-Parrinello) calculations, but also opens the perspective to use resolution of identity (RI) calculations for more extended systems. |
doi_str_mv | 10.1007/s00894-017-3252-9 |
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are in very good agreement with experimental reported values, with deviations at CN = 9 lower than 1% for both Th(IV) and Np(IV). The hydrolysis constants are also in very good agreement with experimental values. Finally, this [corrected] methodology has the advantage of using a GGA functional (BP86) that not only makes the calculations more affordable computationally than hybrid functional or ab initio molecular dynamics simulations (Car-Parrinello) calculations, but also opens the perspective to use resolution of identity (RI) calculations for more extended systems.</description><identifier>EISSN: 0948-5023</identifier><identifier>DOI: 10.1007/s00894-017-3252-9</identifier><identifier>PMID: 28197840</identifier><language>eng</language><publisher>Germany</publisher><ispartof>Journal of molecular modeling, 2017-03, Vol.23 (3), p.69-69</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28197840$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Amador, Davi H T</creatorcontrib><creatorcontrib>Sambrano, Julio R</creatorcontrib><creatorcontrib>Gargano, Ricardo</creatorcontrib><creatorcontrib>de Macedo, Luiz Guilherme M</creatorcontrib><title>Computational study of Th(4+) and Np(4+) hydration and hydrolysis of Th(4+) from first principles</title><title>Journal of molecular modeling</title><addtitle>J Mol Model</addtitle><description>The aqueous solvation of Th and Np in the IV oxidation state was examined using cluster models generated by Monte Carlo simulations and density functional theory embedded within the COSMO continuum model to approximate the effect of bulk water. Our results suggest that the coordination number (CN) for both Th(IV) and NP(IV) should be 9, in accordance to some experimental and theoretical results from the literature. The structural values for average oxygen-metal distances are within 0.01 Å compared to experimental data, and also within the experimental error. The calculated ΔG
are in very good agreement with experimental reported values, with deviations at CN = 9 lower than 1% for both Th(IV) and Np(IV). The hydrolysis constants are also in very good agreement with experimental values. Finally, this [corrected] methodology has the advantage of using a GGA functional (BP86) that not only makes the calculations more affordable computationally than hybrid functional or ab initio molecular dynamics simulations (Car-Parrinello) calculations, but also opens the perspective to use resolution of identity (RI) calculations for more extended systems.</description><issn>0948-5023</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNpNkMtKw0AUhgdBbKl9ADeSZUVGz1wzs5TiDYpu6jpM5kIjSSZmkkXe3horuDrf-fk4HH6ErgjcEYD8PgEozTGQHDMqKNZnaAmaKyyAsgVap_QJAIQKKSi9QAuqiM4VhyUy29h042CGKramztIwuimLIdsfNvz2JjOty966GQ-T62dtDn-2WE-pSv_s0McmC1Wfhqzrq9ZWXe3TJToPpk5-fZor9PH0uN--4N378-v2YYc7QuWAQ_CGS-pKS0p7JGk9cKKJkVYSmXOhnFFgc8K1FY5SVvqccSMENT4AKdkKbX7vdn38Gn0aiqZK1te1aX0cU0GUVFJzJtlRvT6pY9l4VxyfbUw_FX-1sG8kyWIC</recordid><startdate>201703</startdate><enddate>201703</enddate><creator>Amador, Davi H T</creator><creator>Sambrano, Julio R</creator><creator>Gargano, Ricardo</creator><creator>de Macedo, Luiz Guilherme M</creator><scope>NPM</scope><scope>7X8</scope></search><sort><creationdate>201703</creationdate><title>Computational study of Th(4+) and Np(4+) hydration and hydrolysis of Th(4+) from first principles</title><author>Amador, Davi H T ; Sambrano, Julio R ; Gargano, Ricardo ; de Macedo, Luiz Guilherme M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p126t-ffea462dbc1bca466ce04191a6c6167458da80c7149c5d223be734a552aef01b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Amador, Davi H T</creatorcontrib><creatorcontrib>Sambrano, Julio R</creatorcontrib><creatorcontrib>Gargano, Ricardo</creatorcontrib><creatorcontrib>de Macedo, Luiz Guilherme M</creatorcontrib><collection>PubMed</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of molecular modeling</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Amador, Davi H T</au><au>Sambrano, Julio R</au><au>Gargano, Ricardo</au><au>de Macedo, Luiz Guilherme M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Computational study of Th(4+) and Np(4+) hydration and hydrolysis of Th(4+) from first principles</atitle><jtitle>Journal of molecular modeling</jtitle><addtitle>J Mol Model</addtitle><date>2017-03</date><risdate>2017</risdate><volume>23</volume><issue>3</issue><spage>69</spage><epage>69</epage><pages>69-69</pages><eissn>0948-5023</eissn><abstract>The aqueous solvation of Th and Np in the IV oxidation state was examined using cluster models generated by Monte Carlo simulations and density functional theory embedded within the COSMO continuum model to approximate the effect of bulk water. Our results suggest that the coordination number (CN) for both Th(IV) and NP(IV) should be 9, in accordance to some experimental and theoretical results from the literature. The structural values for average oxygen-metal distances are within 0.01 Å compared to experimental data, and also within the experimental error. The calculated ΔG
are in very good agreement with experimental reported values, with deviations at CN = 9 lower than 1% for both Th(IV) and Np(IV). The hydrolysis constants are also in very good agreement with experimental values. Finally, this [corrected] methodology has the advantage of using a GGA functional (BP86) that not only makes the calculations more affordable computationally than hybrid functional or ab initio molecular dynamics simulations (Car-Parrinello) calculations, but also opens the perspective to use resolution of identity (RI) calculations for more extended systems.</abstract><cop>Germany</cop><pmid>28197840</pmid><doi>10.1007/s00894-017-3252-9</doi><tpages>1</tpages></addata></record> |
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title | Computational study of Th(4+) and Np(4+) hydration and hydrolysis of Th(4+) from first principles |
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