Comparison of high-throughput sequencing data compression tools

A team of international scientists benchmark current compression methods for high-throughput sequencing data. High-throughput sequencing (HTS) data are commonly stored as raw sequencing reads in FASTQ format or as reads mapped to a reference, in SAM format, both with large memory footprints. Worldwi...

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Veröffentlicht in:	Nature methods 2016-12, Vol.13 (12), p.1005-1008
Hauptverfasser:	Numanagić, Ibrahim, Bonfield, James K, Hach, Faraz, Voges, Jan, Ostermann, Jörn, Alberti, Claudio, Mattavelli, Marco, Sahinalp, S Cenk
Format:	Artikel
Sprache:	eng
Schlagworte:	631/114/2402 631/114/2416 631/114/794 Analysis Animals Benchmarks Bioinformatics Biological Microscopy Biological Techniques Biomedical and Life Sciences Biomedical Engineering/Biotechnology brief-communication Cacao - genetics Computational Biology - methods Data compression Data Compression - methods DNA sequencing Drosophila melanogaster - genetics Escherichia coli - genetics Genomic libraries High-Throughput Nucleotide Sequencing - methods Humans Life Sciences Proteomics Pseudomonas aeruginosa - genetics
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