FASTdoop: a versatile and efficient library for the input of FASTA and FASTQ files for MapReduce Hadoop bioinformatics applications

MapReduce Hadoop bioinformatics applications require the availability of special-purpose routines to manage the input of sequence files. Unfortunately, the Hadoop framework does not provide any built-in support for the most popular sequence file formats like FASTA or BAM. Moreover, the development o...

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Veröffentlicht in:	Bioinformatics (Oxford, England) England), 2017-05, Vol.33 (10), p.1575-1577
Hauptverfasser:	Ferraro Petrillo, Umberto, Roscigno, Gianluca, Cattaneo, Giuseppe, Giancarlo, Raffaele
Format:	Artikel
Sprache:	eng
Schlagworte:	Database Management Systems Gene Library Genome, Human Genomics - methods Humans Information Storage and Retrieval Sequence Analysis, DNA - methods
Online-Zugang:	Volltext
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