Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli
To examine the role of the soxRS regulon in mutagenesis, we characterized the spontaneous mutations occurring in the endogenous tonB gene in the delta soxR strain and the SoxS overproducing strain of Escherichia coli. Neither the delta soxR strain nor the SoxS overproducing strain led to an enhancem...
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Veröffentlicht in: | Journal of radiation research 2002-06, Vol.43 (2), p.195-195 |
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creator | Yamamura, Eiji Lee, Eun Hye Kuzumaki, Akihiro Uematsu, Norio Nunoshiba, Tatsuo Kawata, Masakado Yamamoto, Kazuo |
description | To examine the role of the soxRS regulon in mutagenesis, we characterized the spontaneous mutations occurring in the endogenous tonB gene in the delta soxR strain and the SoxS overproducing strain of Escherichia coli. Neither the delta soxR strain nor the SoxS overproducing strain led to an enhancement or diminishment of the spontaneous mutation frequency. By DNA sequencing, we determined 50 spontaneous mutants from the delta soxR strains, and found that 36% were both base substitutions and IS insertions, 14% frameshifts and 10% deletions. Among the base substitutions, G:C-->T:A transversions and G:C-->A:T transitions predominated, followed by A:T-->T:A transversions. We determined 54 spontaneous mutants from the SoxS overproducing strains, and found that 37% were IS insertions, 31% base substitutions, 17% frameshifts, 9% deletions and 6% duplications. Among the base substitutions, G:C-->T:A transversions dominated, followed by A:T-->T:A transversions and G:C-->A:T transitions. These results were similar to those from the soxRS+ strains. Thus, it is suggested that the soxRS-regulated genes do not play a significant role in the defense against spontaneous mutagenesis. |
doi_str_mv | 10.1269/jrr.43.195 |
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Neither the delta soxR strain nor the SoxS overproducing strain led to an enhancement or diminishment of the spontaneous mutation frequency. By DNA sequencing, we determined 50 spontaneous mutants from the delta soxR strains, and found that 36% were both base substitutions and IS insertions, 14% frameshifts and 10% deletions. Among the base substitutions, G:C-->T:A transversions and G:C-->A:T transitions predominated, followed by A:T-->T:A transversions. We determined 54 spontaneous mutants from the SoxS overproducing strains, and found that 37% were IS insertions, 31% base substitutions, 17% frameshifts, 9% deletions and 6% duplications. Among the base substitutions, G:C-->T:A transversions dominated, followed by A:T-->T:A transversions and G:C-->A:T transitions. These results were similar to those from the soxRS+ strains. Thus, it is suggested that the soxRS-regulated genes do not play a significant role in the defense against spontaneous mutagenesis.</description><identifier>ISSN: 0449-3060</identifier><identifier>DOI: 10.1269/jrr.43.195</identifier><identifier>PMID: 12238334</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Proteins - biosynthesis ; Base Sequence - genetics ; Escherichia coli - genetics ; Escherichia coli - metabolism ; Escherichia coli Proteins - biosynthesis ; Mutation - genetics ; Trans-Activators - biosynthesis ; Transcription Factors - biosynthesis</subject><ispartof>Journal of radiation research, 2002-06, Vol.43 (2), p.195-195</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c440t-8d59c15881cf496a644a6a830b731edc26beca717e46fd9617c40cf2e6b6075e3</citedby><cites>FETCH-LOGICAL-c440t-8d59c15881cf496a644a6a830b731edc26beca717e46fd9617c40cf2e6b6075e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,864,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12238334$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yamamura, Eiji</creatorcontrib><creatorcontrib>Lee, Eun Hye</creatorcontrib><creatorcontrib>Kuzumaki, Akihiro</creatorcontrib><creatorcontrib>Uematsu, Norio</creatorcontrib><creatorcontrib>Nunoshiba, Tatsuo</creatorcontrib><creatorcontrib>Kawata, Masakado</creatorcontrib><creatorcontrib>Yamamoto, Kazuo</creatorcontrib><title>Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli</title><title>Journal of radiation research</title><addtitle>J Radiat Res</addtitle><description>To examine the role of the soxRS regulon in mutagenesis, we characterized the spontaneous mutations occurring in the endogenous tonB gene in the delta soxR strain and the SoxS overproducing strain of Escherichia coli. Neither the delta soxR strain nor the SoxS overproducing strain led to an enhancement or diminishment of the spontaneous mutation frequency. By DNA sequencing, we determined 50 spontaneous mutants from the delta soxR strains, and found that 36% were both base substitutions and IS insertions, 14% frameshifts and 10% deletions. Among the base substitutions, G:C-->T:A transversions and G:C-->A:T transitions predominated, followed by A:T-->T:A transversions. We determined 54 spontaneous mutants from the SoxS overproducing strains, and found that 37% were IS insertions, 31% base substitutions, 17% frameshifts, 9% deletions and 6% duplications. Among the base substitutions, G:C-->T:A transversions dominated, followed by A:T-->T:A transversions and G:C-->A:T transitions. These results were similar to those from the soxRS+ strains. Thus, it is suggested that the soxRS-regulated genes do not play a significant role in the defense against spontaneous mutagenesis.</description><subject>Bacterial Proteins - biosynthesis</subject><subject>Base Sequence - genetics</subject><subject>Escherichia coli - genetics</subject><subject>Escherichia coli - metabolism</subject><subject>Escherichia coli Proteins - biosynthesis</subject><subject>Mutation - genetics</subject><subject>Trans-Activators - biosynthesis</subject><subject>Transcription Factors - biosynthesis</subject><issn>0449-3060</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2002</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkM9LwzAUgHNQ3Jxe_AMkJw9CZ9KkaXuUMX-AIDg9hzR9tRltM5NUpn-9GR14evD4-HjvQ-iKkiVNRXm3dW7J2ZKW2QmaE87LhBFBZujc-y0haU4ycoZmNE1ZwRifo37VKqd0AGd-VTB2wLbBfmeHoAawo8f9GKa9GXBoAdfQBYW93b9hNdR4Y_cbbL_B7ZytR22GT-yDU2bwB9Ha6zaadWsU1rYzF-i0UZ2Hy-NcoI-H9fvqKXl5fXxe3b8kmnMSkqLOSk2zoqC64aVQgnMlVMFIlTMKtU5FBVrlNAcumroUNNec6CYFUQmSZ8AW6Gbyxqu-RvBB9sZr6LrpKUkLEauUPIK3E6id9d5BI3fO9Mr9SErkIaiMQSVnMgaN8PXROlY91P_osSb7A9HcdUY</recordid><startdate>20020601</startdate><enddate>20020601</enddate><creator>Yamamura, Eiji</creator><creator>Lee, Eun Hye</creator><creator>Kuzumaki, Akihiro</creator><creator>Uematsu, Norio</creator><creator>Nunoshiba, Tatsuo</creator><creator>Kawata, Masakado</creator><creator>Yamamoto, Kazuo</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope></search><sort><creationdate>20020601</creationdate><title>Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli</title><author>Yamamura, Eiji ; Lee, Eun Hye ; Kuzumaki, Akihiro ; Uematsu, Norio ; Nunoshiba, Tatsuo ; Kawata, Masakado ; Yamamoto, Kazuo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c440t-8d59c15881cf496a644a6a830b731edc26beca717e46fd9617c40cf2e6b6075e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Bacterial Proteins - biosynthesis</topic><topic>Base Sequence - genetics</topic><topic>Escherichia coli - genetics</topic><topic>Escherichia coli - metabolism</topic><topic>Escherichia coli Proteins - biosynthesis</topic><topic>Mutation - genetics</topic><topic>Trans-Activators - biosynthesis</topic><topic>Transcription Factors - biosynthesis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yamamura, Eiji</creatorcontrib><creatorcontrib>Lee, Eun Hye</creatorcontrib><creatorcontrib>Kuzumaki, Akihiro</creatorcontrib><creatorcontrib>Uematsu, Norio</creatorcontrib><creatorcontrib>Nunoshiba, Tatsuo</creatorcontrib><creatorcontrib>Kawata, Masakado</creatorcontrib><creatorcontrib>Yamamoto, Kazuo</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>Journal of radiation research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yamamura, Eiji</au><au>Lee, Eun Hye</au><au>Kuzumaki, Akihiro</au><au>Uematsu, Norio</au><au>Nunoshiba, Tatsuo</au><au>Kawata, Masakado</au><au>Yamamoto, Kazuo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli</atitle><jtitle>Journal of radiation research</jtitle><addtitle>J Radiat Res</addtitle><date>2002-06-01</date><risdate>2002</risdate><volume>43</volume><issue>2</issue><spage>195</spage><epage>195</epage><pages>195-195</pages><issn>0449-3060</issn><abstract>To examine the role of the soxRS regulon in mutagenesis, we characterized the spontaneous mutations occurring in the endogenous tonB gene in the delta soxR strain and the SoxS overproducing strain of Escherichia coli. Neither the delta soxR strain nor the SoxS overproducing strain led to an enhancement or diminishment of the spontaneous mutation frequency. By DNA sequencing, we determined 50 spontaneous mutants from the delta soxR strains, and found that 36% were both base substitutions and IS insertions, 14% frameshifts and 10% deletions. Among the base substitutions, G:C-->T:A transversions and G:C-->A:T transitions predominated, followed by A:T-->T:A transversions. We determined 54 spontaneous mutants from the SoxS overproducing strains, and found that 37% were IS insertions, 31% base substitutions, 17% frameshifts, 9% deletions and 6% duplications. Among the base substitutions, G:C-->T:A transversions dominated, followed by A:T-->T:A transversions and G:C-->A:T transitions. These results were similar to those from the soxRS+ strains. Thus, it is suggested that the soxRS-regulated genes do not play a significant role in the defense against spontaneous mutagenesis.</abstract><cop>England</cop><pmid>12238334</pmid><doi>10.1269/jrr.43.195</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Bacterial Proteins - biosynthesis Base Sequence - genetics Escherichia coli - genetics Escherichia coli - metabolism Escherichia coli Proteins - biosynthesis Mutation - genetics Trans-Activators - biosynthesis Transcription Factors - biosynthesis |
title | Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli |
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