Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli

To examine the role of the soxRS regulon in mutagenesis, we characterized the spontaneous mutations occurring in the endogenous tonB gene in the delta soxR strain and the SoxS overproducing strain of Escherichia coli. Neither the delta soxR strain nor the SoxS overproducing strain led to an enhancem...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Journal of radiation research 2002-06, Vol.43 (2), p.195-195
Hauptverfasser: Yamamura, Eiji, Lee, Eun Hye, Kuzumaki, Akihiro, Uematsu, Norio, Nunoshiba, Tatsuo, Kawata, Masakado, Yamamoto, Kazuo
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 195
container_issue 2
container_start_page 195
container_title Journal of radiation research
container_volume 43
creator Yamamura, Eiji
Lee, Eun Hye
Kuzumaki, Akihiro
Uematsu, Norio
Nunoshiba, Tatsuo
Kawata, Masakado
Yamamoto, Kazuo
description To examine the role of the soxRS regulon in mutagenesis, we characterized the spontaneous mutations occurring in the endogenous tonB gene in the delta soxR strain and the SoxS overproducing strain of Escherichia coli. Neither the delta soxR strain nor the SoxS overproducing strain led to an enhancement or diminishment of the spontaneous mutation frequency. By DNA sequencing, we determined 50 spontaneous mutants from the delta soxR strains, and found that 36% were both base substitutions and IS insertions, 14% frameshifts and 10% deletions. Among the base substitutions, G:C-->T:A transversions and G:C-->A:T transitions predominated, followed by A:T-->T:A transversions. We determined 54 spontaneous mutants from the SoxS overproducing strains, and found that 37% were IS insertions, 31% base substitutions, 17% frameshifts, 9% deletions and 6% duplications. Among the base substitutions, G:C-->T:A transversions dominated, followed by A:T-->T:A transversions and G:C-->A:T transitions. These results were similar to those from the soxRS+ strains. Thus, it is suggested that the soxRS-regulated genes do not play a significant role in the defense against spontaneous mutagenesis.
doi_str_mv 10.1269/jrr.43.195
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_18606094</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>18606094</sourcerecordid><originalsourceid>FETCH-LOGICAL-c440t-8d59c15881cf496a644a6a830b731edc26beca717e46fd9617c40cf2e6b6075e3</originalsourceid><addsrcrecordid>eNpFkM9LwzAUgHNQ3Jxe_AMkJw9CZ9KkaXuUMX-AIDg9hzR9tRltM5NUpn-9GR14evD4-HjvQ-iKkiVNRXm3dW7J2ZKW2QmaE87LhBFBZujc-y0haU4ycoZmNE1ZwRifo37VKqd0AGd-VTB2wLbBfmeHoAawo8f9GKa9GXBoAdfQBYW93b9hNdR4Y_cbbL_B7ZytR22GT-yDU2bwB9Ha6zaadWsU1rYzF-i0UZ2Hy-NcoI-H9fvqKXl5fXxe3b8kmnMSkqLOSk2zoqC64aVQgnMlVMFIlTMKtU5FBVrlNAcumroUNNec6CYFUQmSZ8AW6Gbyxqu-RvBB9sZr6LrpKUkLEauUPIK3E6id9d5BI3fO9Mr9SErkIaiMQSVnMgaN8PXROlY91P_osSb7A9HcdUY</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>18606094</pqid></control><display><type>article</type><title>Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli</title><source>J-STAGE Free</source><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Oxford Journals Open Access Collection</source><source>Freely Accessible Japanese Titles</source><source>Free Full-Text Journals in Chemistry</source><creator>Yamamura, Eiji ; Lee, Eun Hye ; Kuzumaki, Akihiro ; Uematsu, Norio ; Nunoshiba, Tatsuo ; Kawata, Masakado ; Yamamoto, Kazuo</creator><creatorcontrib>Yamamura, Eiji ; Lee, Eun Hye ; Kuzumaki, Akihiro ; Uematsu, Norio ; Nunoshiba, Tatsuo ; Kawata, Masakado ; Yamamoto, Kazuo</creatorcontrib><description>To examine the role of the soxRS regulon in mutagenesis, we characterized the spontaneous mutations occurring in the endogenous tonB gene in the delta soxR strain and the SoxS overproducing strain of Escherichia coli. Neither the delta soxR strain nor the SoxS overproducing strain led to an enhancement or diminishment of the spontaneous mutation frequency. By DNA sequencing, we determined 50 spontaneous mutants from the delta soxR strains, and found that 36% were both base substitutions and IS insertions, 14% frameshifts and 10% deletions. Among the base substitutions, G:C--&gt;T:A transversions and G:C--&gt;A:T transitions predominated, followed by A:T--&gt;T:A transversions. We determined 54 spontaneous mutants from the SoxS overproducing strains, and found that 37% were IS insertions, 31% base substitutions, 17% frameshifts, 9% deletions and 6% duplications. Among the base substitutions, G:C--&gt;T:A transversions dominated, followed by A:T--&gt;T:A transversions and G:C--&gt;A:T transitions. These results were similar to those from the soxRS+ strains. Thus, it is suggested that the soxRS-regulated genes do not play a significant role in the defense against spontaneous mutagenesis.</description><identifier>ISSN: 0449-3060</identifier><identifier>DOI: 10.1269/jrr.43.195</identifier><identifier>PMID: 12238334</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Proteins - biosynthesis ; Base Sequence - genetics ; Escherichia coli - genetics ; Escherichia coli - metabolism ; Escherichia coli Proteins - biosynthesis ; Mutation - genetics ; Trans-Activators - biosynthesis ; Transcription Factors - biosynthesis</subject><ispartof>Journal of radiation research, 2002-06, Vol.43 (2), p.195-195</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c440t-8d59c15881cf496a644a6a830b731edc26beca717e46fd9617c40cf2e6b6075e3</citedby><cites>FETCH-LOGICAL-c440t-8d59c15881cf496a644a6a830b731edc26beca717e46fd9617c40cf2e6b6075e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,864,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12238334$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yamamura, Eiji</creatorcontrib><creatorcontrib>Lee, Eun Hye</creatorcontrib><creatorcontrib>Kuzumaki, Akihiro</creatorcontrib><creatorcontrib>Uematsu, Norio</creatorcontrib><creatorcontrib>Nunoshiba, Tatsuo</creatorcontrib><creatorcontrib>Kawata, Masakado</creatorcontrib><creatorcontrib>Yamamoto, Kazuo</creatorcontrib><title>Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli</title><title>Journal of radiation research</title><addtitle>J Radiat Res</addtitle><description>To examine the role of the soxRS regulon in mutagenesis, we characterized the spontaneous mutations occurring in the endogenous tonB gene in the delta soxR strain and the SoxS overproducing strain of Escherichia coli. Neither the delta soxR strain nor the SoxS overproducing strain led to an enhancement or diminishment of the spontaneous mutation frequency. By DNA sequencing, we determined 50 spontaneous mutants from the delta soxR strains, and found that 36% were both base substitutions and IS insertions, 14% frameshifts and 10% deletions. Among the base substitutions, G:C--&gt;T:A transversions and G:C--&gt;A:T transitions predominated, followed by A:T--&gt;T:A transversions. We determined 54 spontaneous mutants from the SoxS overproducing strains, and found that 37% were IS insertions, 31% base substitutions, 17% frameshifts, 9% deletions and 6% duplications. Among the base substitutions, G:C--&gt;T:A transversions dominated, followed by A:T--&gt;T:A transversions and G:C--&gt;A:T transitions. These results were similar to those from the soxRS+ strains. Thus, it is suggested that the soxRS-regulated genes do not play a significant role in the defense against spontaneous mutagenesis.</description><subject>Bacterial Proteins - biosynthesis</subject><subject>Base Sequence - genetics</subject><subject>Escherichia coli - genetics</subject><subject>Escherichia coli - metabolism</subject><subject>Escherichia coli Proteins - biosynthesis</subject><subject>Mutation - genetics</subject><subject>Trans-Activators - biosynthesis</subject><subject>Transcription Factors - biosynthesis</subject><issn>0449-3060</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2002</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpFkM9LwzAUgHNQ3Jxe_AMkJw9CZ9KkaXuUMX-AIDg9hzR9tRltM5NUpn-9GR14evD4-HjvQ-iKkiVNRXm3dW7J2ZKW2QmaE87LhBFBZujc-y0haU4ycoZmNE1ZwRifo37VKqd0AGd-VTB2wLbBfmeHoAawo8f9GKa9GXBoAdfQBYW93b9hNdR4Y_cbbL_B7ZytR22GT-yDU2bwB9Ha6zaadWsU1rYzF-i0UZ2Hy-NcoI-H9fvqKXl5fXxe3b8kmnMSkqLOSk2zoqC64aVQgnMlVMFIlTMKtU5FBVrlNAcumroUNNec6CYFUQmSZ8AW6Gbyxqu-RvBB9sZr6LrpKUkLEauUPIK3E6id9d5BI3fO9Mr9SErkIaiMQSVnMgaN8PXROlY91P_osSb7A9HcdUY</recordid><startdate>20020601</startdate><enddate>20020601</enddate><creator>Yamamura, Eiji</creator><creator>Lee, Eun Hye</creator><creator>Kuzumaki, Akihiro</creator><creator>Uematsu, Norio</creator><creator>Nunoshiba, Tatsuo</creator><creator>Kawata, Masakado</creator><creator>Yamamoto, Kazuo</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope></search><sort><creationdate>20020601</creationdate><title>Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli</title><author>Yamamura, Eiji ; Lee, Eun Hye ; Kuzumaki, Akihiro ; Uematsu, Norio ; Nunoshiba, Tatsuo ; Kawata, Masakado ; Yamamoto, Kazuo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c440t-8d59c15881cf496a644a6a830b731edc26beca717e46fd9617c40cf2e6b6075e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Bacterial Proteins - biosynthesis</topic><topic>Base Sequence - genetics</topic><topic>Escherichia coli - genetics</topic><topic>Escherichia coli - metabolism</topic><topic>Escherichia coli Proteins - biosynthesis</topic><topic>Mutation - genetics</topic><topic>Trans-Activators - biosynthesis</topic><topic>Transcription Factors - biosynthesis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yamamura, Eiji</creatorcontrib><creatorcontrib>Lee, Eun Hye</creatorcontrib><creatorcontrib>Kuzumaki, Akihiro</creatorcontrib><creatorcontrib>Uematsu, Norio</creatorcontrib><creatorcontrib>Nunoshiba, Tatsuo</creatorcontrib><creatorcontrib>Kawata, Masakado</creatorcontrib><creatorcontrib>Yamamoto, Kazuo</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>Journal of radiation research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yamamura, Eiji</au><au>Lee, Eun Hye</au><au>Kuzumaki, Akihiro</au><au>Uematsu, Norio</au><au>Nunoshiba, Tatsuo</au><au>Kawata, Masakado</au><au>Yamamoto, Kazuo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli</atitle><jtitle>Journal of radiation research</jtitle><addtitle>J Radiat Res</addtitle><date>2002-06-01</date><risdate>2002</risdate><volume>43</volume><issue>2</issue><spage>195</spage><epage>195</epage><pages>195-195</pages><issn>0449-3060</issn><abstract>To examine the role of the soxRS regulon in mutagenesis, we characterized the spontaneous mutations occurring in the endogenous tonB gene in the delta soxR strain and the SoxS overproducing strain of Escherichia coli. Neither the delta soxR strain nor the SoxS overproducing strain led to an enhancement or diminishment of the spontaneous mutation frequency. By DNA sequencing, we determined 50 spontaneous mutants from the delta soxR strains, and found that 36% were both base substitutions and IS insertions, 14% frameshifts and 10% deletions. Among the base substitutions, G:C--&gt;T:A transversions and G:C--&gt;A:T transitions predominated, followed by A:T--&gt;T:A transversions. We determined 54 spontaneous mutants from the SoxS overproducing strains, and found that 37% were IS insertions, 31% base substitutions, 17% frameshifts, 9% deletions and 6% duplications. Among the base substitutions, G:C--&gt;T:A transversions dominated, followed by A:T--&gt;T:A transversions and G:C--&gt;A:T transitions. These results were similar to those from the soxRS+ strains. Thus, it is suggested that the soxRS-regulated genes do not play a significant role in the defense against spontaneous mutagenesis.</abstract><cop>England</cop><pmid>12238334</pmid><doi>10.1269/jrr.43.195</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0449-3060
ispartof Journal of radiation research, 2002-06, Vol.43 (2), p.195-195
issn 0449-3060
language eng
recordid cdi_proquest_miscellaneous_18606094
source J-STAGE Free; MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Oxford Journals Open Access Collection; Freely Accessible Japanese Titles; Free Full-Text Journals in Chemistry
subjects Bacterial Proteins - biosynthesis
Base Sequence - genetics
Escherichia coli - genetics
Escherichia coli - metabolism
Escherichia coli Proteins - biosynthesis
Mutation - genetics
Trans-Activators - biosynthesis
Transcription Factors - biosynthesis
title Characterization of spontaneous mutation in the delta soxR and SoxS overproducing strains of Escherichia coli
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-04T22%3A23%3A28IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Characterization%20of%20spontaneous%20mutation%20in%20the%20delta%20soxR%20and%20SoxS%20overproducing%20strains%20of%20Escherichia%20coli&rft.jtitle=Journal%20of%20radiation%20research&rft.au=Yamamura,%20Eiji&rft.date=2002-06-01&rft.volume=43&rft.issue=2&rft.spage=195&rft.epage=195&rft.pages=195-195&rft.issn=0449-3060&rft_id=info:doi/10.1269/jrr.43.195&rft_dat=%3Cproquest_cross%3E18606094%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=18606094&rft_id=info:pmid/12238334&rfr_iscdi=true