Molecular characterization and genetic diversity of bovine Kobuvirus, Brazil
It is suggested that Bovine kobuvirus (BKV) is involved in the etiology of gastroenteric diseases especially among calves; however, this association remains unknown. This study evaluated 216 fecal samples from cattle with and without diarrhea symptoms obtained from different regions of Brazil. A 216...
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| Veröffentlicht in: | Virus genes 2017-02, Vol.53 (1), p.105-110 |
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| creator | Candido, Marcelo Batinga, Maria Cryskely Agra Alencar, Anna Luiza Farias de Almeida-Queiroz, Sabrina Ribeiro da Glória Buzinaro, Maria Livonesi, Márcia Cristina Fernandes, Andrezza Maria de Sousa, Ricardo Luiz Moro |
| description | It is suggested that
Bovine kobuvirus
(BKV) is involved in the etiology of gastroenteric diseases especially among calves; however, this association remains unknown. This study evaluated 216 fecal samples from cattle with and without diarrhea symptoms obtained from different regions of Brazil. A 216 bp fragment of the BKV 3D gene was amplified by RT-PCR in 14.4 % (31/216) of the studied samples, and 17 samples were subjected to nucleotide sequencing. All positive samples were obtained from animals aged less than 5 months, and most of animals presented diarrhea (
p
|
| doi_str_mv | 10.1007/s11262-016-1391-1 |
| format | Article |
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Bovine kobuvirus
(BKV) is involved in the etiology of gastroenteric diseases especially among calves; however, this association remains unknown. This study evaluated 216 fecal samples from cattle with and without diarrhea symptoms obtained from different regions of Brazil. A 216 bp fragment of the BKV 3D gene was amplified by RT-PCR in 14.4 % (31/216) of the studied samples, and 17 samples were subjected to nucleotide sequencing. All positive samples were obtained from animals aged less than 5 months, and most of animals presented diarrhea (
p
< 0.05). Phylogenetic analyses showed that the obtained sequences were grouped within the genogroup 2 of BKV forming subclades specific for each Brazilian municipality sampled. In addition, the alignment of the sequences revealed differences of nucleotides between sequences from different locations. Our results indicate for the first time that there is a regional genotypic differentiation of BKV in Brazil.</description><identifier>ISSN: 0920-8569</identifier><identifier>EISSN: 1572-994X</identifier><identifier>DOI: 10.1007/s11262-016-1391-1</identifier><identifier>PMID: 27623839</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Animals ; Biomedical and Life Sciences ; Biomedicine ; Brazil - epidemiology ; Cattle ; Cattle Diseases - epidemiology ; Cattle Diseases - virology ; Genes, Viral ; Genetic Variation ; Genome, Viral ; Genotype ; Kobuvirus - classification ; Kobuvirus - genetics ; Medical Microbiology ; Phylogeny ; Picornaviridae Infections - veterinary ; Plant Sciences ; Sequence Analysis, DNA ; Virology</subject><ispartof>Virus genes, 2017-02, Vol.53 (1), p.105-110</ispartof><rights>Springer Science+Business Media New York 2016</rights><rights>Virus Genes is a copyright of Springer, 2017.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c481t-1c9fc1f90ed0815175f4b70d0cbecaaf9c9400cc8210fea927e28ae8a0771c8d3</citedby><cites>FETCH-LOGICAL-c481t-1c9fc1f90ed0815175f4b70d0cbecaaf9c9400cc8210fea927e28ae8a0771c8d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11262-016-1391-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11262-016-1391-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>315,782,786,27931,27932,41495,42564,51326</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27623839$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Candido, Marcelo</creatorcontrib><creatorcontrib>Batinga, Maria Cryskely Agra</creatorcontrib><creatorcontrib>Alencar, Anna Luiza Farias</creatorcontrib><creatorcontrib>de Almeida-Queiroz, Sabrina Ribeiro</creatorcontrib><creatorcontrib>da Glória Buzinaro, Maria</creatorcontrib><creatorcontrib>Livonesi, Márcia Cristina</creatorcontrib><creatorcontrib>Fernandes, Andrezza Maria</creatorcontrib><creatorcontrib>de Sousa, Ricardo Luiz Moro</creatorcontrib><title>Molecular characterization and genetic diversity of bovine Kobuvirus, Brazil</title><title>Virus genes</title><addtitle>Virus Genes</addtitle><addtitle>Virus Genes</addtitle><description>It is suggested that
Bovine kobuvirus
(BKV) is involved in the etiology of gastroenteric diseases especially among calves; however, this association remains unknown. This study evaluated 216 fecal samples from cattle with and without diarrhea symptoms obtained from different regions of Brazil. A 216 bp fragment of the BKV 3D gene was amplified by RT-PCR in 14.4 % (31/216) of the studied samples, and 17 samples were subjected to nucleotide sequencing. All positive samples were obtained from animals aged less than 5 months, and most of animals presented diarrhea (
p
< 0.05). Phylogenetic analyses showed that the obtained sequences were grouped within the genogroup 2 of BKV forming subclades specific for each Brazilian municipality sampled. In addition, the alignment of the sequences revealed differences of nucleotides between sequences from different locations. Our results indicate for the first time that there is a regional genotypic differentiation of BKV in Brazil.</description><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brazil - epidemiology</subject><subject>Cattle</subject><subject>Cattle Diseases - epidemiology</subject><subject>Cattle Diseases - virology</subject><subject>Genes, Viral</subject><subject>Genetic Variation</subject><subject>Genome, Viral</subject><subject>Genotype</subject><subject>Kobuvirus - classification</subject><subject>Kobuvirus - genetics</subject><subject>Medical Microbiology</subject><subject>Phylogeny</subject><subject>Picornaviridae Infections - veterinary</subject><subject>Plant Sciences</subject><subject>Sequence Analysis, DNA</subject><subject>Virology</subject><issn>0920-8569</issn><issn>1572-994X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp1kE1LxDAQhoMouq7-AC9S8OLB6kz6keSo4heueFHwVtJ0uka6jSbtgvvr7bKriOBl5jDPvDM8jB0gnCKAOAuIPOcxYB5jojDGDTbCTPBYqfRlk41AcYhllqsdthvCGwBIydNttsNFzhOZqBGbPLiGTN9oH5lX7bXpyNuF7qxrI91W0ZRa6qyJKjsnH2z3Gbk6Kt3cthTdu7KfW9-Hk-jC64Vt9thWrZtA--s-Zs_XV0-Xt_Hk8ebu8nwSm1RiF6NRtcFaAVUgMUOR1WkpoAJTktG6VkalAMZIjlCTVlwQl5qkBiHQyCoZs-NV7rt3Hz2FrpjZYKhpdEuuDwXKTIlEpIIP6NEf9M31vh2-G6hcKC7THAYKV5TxLgRPdfHu7Uz7zwKhWKouVqqLQXWxVD2UMTtcJ_fljKqfjW-3A8BXQBhG7ZT8r9P_pn4B0HuJew</recordid><startdate>20170201</startdate><enddate>20170201</enddate><creator>Candido, Marcelo</creator><creator>Batinga, Maria Cryskely Agra</creator><creator>Alencar, Anna Luiza Farias</creator><creator>de Almeida-Queiroz, Sabrina Ribeiro</creator><creator>da Glória Buzinaro, Maria</creator><creator>Livonesi, Márcia Cristina</creator><creator>Fernandes, Andrezza Maria</creator><creator>de Sousa, Ricardo Luiz Moro</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20170201</creationdate><title>Molecular characterization and genetic diversity of bovine Kobuvirus, Brazil</title><author>Candido, Marcelo ; Batinga, Maria Cryskely Agra ; Alencar, Anna Luiza Farias ; de Almeida-Queiroz, Sabrina Ribeiro ; da Glória Buzinaro, Maria ; Livonesi, Márcia Cristina ; Fernandes, Andrezza Maria ; de Sousa, Ricardo Luiz Moro</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c481t-1c9fc1f90ed0815175f4b70d0cbecaaf9c9400cc8210fea927e28ae8a0771c8d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Animals</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Brazil - epidemiology</topic><topic>Cattle</topic><topic>Cattle Diseases - epidemiology</topic><topic>Cattle Diseases - virology</topic><topic>Genes, Viral</topic><topic>Genetic Variation</topic><topic>Genome, Viral</topic><topic>Genotype</topic><topic>Kobuvirus - classification</topic><topic>Kobuvirus - genetics</topic><topic>Medical Microbiology</topic><topic>Phylogeny</topic><topic>Picornaviridae Infections - veterinary</topic><topic>Plant Sciences</topic><topic>Sequence Analysis, DNA</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Candido, Marcelo</creatorcontrib><creatorcontrib>Batinga, Maria Cryskely Agra</creatorcontrib><creatorcontrib>Alencar, Anna Luiza Farias</creatorcontrib><creatorcontrib>de Almeida-Queiroz, Sabrina Ribeiro</creatorcontrib><creatorcontrib>da Glória Buzinaro, Maria</creatorcontrib><creatorcontrib>Livonesi, Márcia Cristina</creatorcontrib><creatorcontrib>Fernandes, Andrezza Maria</creatorcontrib><creatorcontrib>de Sousa, Ricardo Luiz Moro</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Virus genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Candido, Marcelo</au><au>Batinga, Maria Cryskely Agra</au><au>Alencar, Anna Luiza Farias</au><au>de Almeida-Queiroz, Sabrina Ribeiro</au><au>da Glória Buzinaro, Maria</au><au>Livonesi, Márcia Cristina</au><au>Fernandes, Andrezza Maria</au><au>de Sousa, Ricardo Luiz Moro</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular characterization and genetic diversity of bovine Kobuvirus, Brazil</atitle><jtitle>Virus genes</jtitle><stitle>Virus Genes</stitle><addtitle>Virus Genes</addtitle><date>2017-02-01</date><risdate>2017</risdate><volume>53</volume><issue>1</issue><spage>105</spage><epage>110</epage><pages>105-110</pages><issn>0920-8569</issn><eissn>1572-994X</eissn><abstract>It is suggested that
Bovine kobuvirus
(BKV) is involved in the etiology of gastroenteric diseases especially among calves; however, this association remains unknown. This study evaluated 216 fecal samples from cattle with and without diarrhea symptoms obtained from different regions of Brazil. A 216 bp fragment of the BKV 3D gene was amplified by RT-PCR in 14.4 % (31/216) of the studied samples, and 17 samples were subjected to nucleotide sequencing. All positive samples were obtained from animals aged less than 5 months, and most of animals presented diarrhea (
p
< 0.05). Phylogenetic analyses showed that the obtained sequences were grouped within the genogroup 2 of BKV forming subclades specific for each Brazilian municipality sampled. In addition, the alignment of the sequences revealed differences of nucleotides between sequences from different locations. Our results indicate for the first time that there is a regional genotypic differentiation of BKV in Brazil.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>27623839</pmid><doi>10.1007/s11262-016-1391-1</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Animals Biomedical and Life Sciences Biomedicine Brazil - epidemiology Cattle Cattle Diseases - epidemiology Cattle Diseases - virology Genes, Viral Genetic Variation Genome, Viral Genotype Kobuvirus - classification Kobuvirus - genetics Medical Microbiology Phylogeny Picornaviridae Infections - veterinary Plant Sciences Sequence Analysis, DNA Virology |
| title | Molecular characterization and genetic diversity of bovine Kobuvirus, Brazil |
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