Isolation of a sp. nov. Ljungan virus from wild birds in Japan
Ljungan virus (LV) has been isolated/detected from rodents in a limited area including European countries and the USA. In this study, we isolated an LV strain from faecal samples of wild birds that had been collected in Japan, and determined the nearly complete sequence of the genome. Sequence analy...
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| Veröffentlicht in: | Journal of general virology 2016-08, Vol.97 (8), p.1818-1822 |
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| container_title | Journal of general virology |
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| creator | Mitake, Hiromichi Fujii, Yuji Nagai, Makoto Ito, Naoto Okadera, Kota Okada, Kazuma Nakagawa, Kento Kishimoto, Mai Mizutani, Tetsuya Okazaki, Katsunori Sakoda, Yoshihiro Takada, Ayato Sugiyama, Makoto |
| description | Ljungan virus (LV) has been isolated/detected from rodents in a limited area including European countries and the USA. In this study, we isolated an LV strain from faecal samples of wild birds that had been collected in Japan, and determined the nearly complete sequence of the genome. Sequence analyses showed that the isolate possesses an LV-like genomic organization: 5UTR-VP0-VP3-VP1-2A1-2A2-2B-2C-3A-3B-3C-3D-3UTR. Phylogenetic and similarity analyses based on the VP1 region indicated that the strain constitutes a novel genotype within LV. In addition, we identified species origin of the faeces as gull species by using the DNA barcoding technique. These data suggested that the novel LV strain infected a gull species, in which the virus had not been identified. Taken together, this study has provided the first evidence of the presence of a novel LV in Japan, highlighting the possibility of LV infection in birds. |
| doi_str_mv | 10.1099/jgv.0.000508 |
| format | Article |
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In this study, we isolated an LV strain from faecal samples of wild birds that had been collected in Japan, and determined the nearly complete sequence of the genome. Sequence analyses showed that the isolate possesses an LV-like genomic organization: 5UTR-VP0-VP3-VP1-2A1-2A2-2B-2C-3A-3B-3C-3D-3UTR. Phylogenetic and similarity analyses based on the VP1 region indicated that the strain constitutes a novel genotype within LV. In addition, we identified species origin of the faeces as gull species by using the DNA barcoding technique. These data suggested that the novel LV strain infected a gull species, in which the virus had not been identified. Taken together, this study has provided the first evidence of the presence of a novel LV in Japan, highlighting the possibility of LV infection in birds.</description><identifier>ISSN: 0022-1317</identifier><identifier>EISSN: 1465-2099</identifier><identifier>DOI: 10.1099/jgv.0.000508</identifier><identifier>PMID: 27207304</identifier><language>eng</language><publisher>England</publisher><subject>Animals ; Charadriiformes - virology ; Feces - virology ; Gene Order ; Genome, Viral ; Japan ; Parechovirus - classification ; Parechovirus - genetics ; Parechovirus - isolation & purification ; Phylogeny ; Picornaviridae Infections - veterinary ; Picornaviridae Infections - virology ; RNA, Viral - genetics ; Sequence Analysis, DNA ; Sequence Homology</subject><ispartof>Journal of general virology, 2016-08, Vol.97 (8), p.1818-1822</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c362t-b37b11f6dfd6c6084ac5b13f7d9dad9297ce7b5f17c74f8a296fc5b01446cb043</citedby><cites>FETCH-LOGICAL-c362t-b37b11f6dfd6c6084ac5b13f7d9dad9297ce7b5f17c74f8a296fc5b01446cb043</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27207304$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Mitake, Hiromichi</creatorcontrib><creatorcontrib>Fujii, Yuji</creatorcontrib><creatorcontrib>Nagai, Makoto</creatorcontrib><creatorcontrib>Ito, Naoto</creatorcontrib><creatorcontrib>Okadera, Kota</creatorcontrib><creatorcontrib>Okada, Kazuma</creatorcontrib><creatorcontrib>Nakagawa, Kento</creatorcontrib><creatorcontrib>Kishimoto, Mai</creatorcontrib><creatorcontrib>Mizutani, Tetsuya</creatorcontrib><creatorcontrib>Okazaki, Katsunori</creatorcontrib><creatorcontrib>Sakoda, Yoshihiro</creatorcontrib><creatorcontrib>Takada, Ayato</creatorcontrib><creatorcontrib>Sugiyama, Makoto</creatorcontrib><title>Isolation of a sp. nov. Ljungan virus from wild birds in Japan</title><title>Journal of general virology</title><addtitle>J Gen Virol</addtitle><description>Ljungan virus (LV) has been isolated/detected from rodents in a limited area including European countries and the USA. In this study, we isolated an LV strain from faecal samples of wild birds that had been collected in Japan, and determined the nearly complete sequence of the genome. Sequence analyses showed that the isolate possesses an LV-like genomic organization: 5UTR-VP0-VP3-VP1-2A1-2A2-2B-2C-3A-3B-3C-3D-3UTR. Phylogenetic and similarity analyses based on the VP1 region indicated that the strain constitutes a novel genotype within LV. In addition, we identified species origin of the faeces as gull species by using the DNA barcoding technique. These data suggested that the novel LV strain infected a gull species, in which the virus had not been identified. Taken together, this study has provided the first evidence of the presence of a novel LV in Japan, highlighting the possibility of LV infection in birds.</description><subject>Animals</subject><subject>Charadriiformes - virology</subject><subject>Feces - virology</subject><subject>Gene Order</subject><subject>Genome, Viral</subject><subject>Japan</subject><subject>Parechovirus - classification</subject><subject>Parechovirus - genetics</subject><subject>Parechovirus - isolation & purification</subject><subject>Phylogeny</subject><subject>Picornaviridae Infections - veterinary</subject><subject>Picornaviridae Infections - virology</subject><subject>RNA, Viral - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology</subject><issn>0022-1317</issn><issn>1465-2099</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkDtPwzAURi0EoqWwMSOPDCRcO3YcL0io4lFUiQVmy7HjKlUSB7sp6r8nVQsz0x3u0dGng9A1gZSAlPfr1TaFFAA4FCdoSljOEzo-TtEUgNKEZERM0EWMawDCGBfnaEIFBZEBm6KHRfSN3tS-w95hjWOf4s5vU7xcD91Kd3hbhyFiF3yLv-vG4rIONuK6w2-6190lOnO6idXV8c7Q5_PTx_w1Wb6_LOaPy8RkOd0kZSZKQlxunc1NDgXThpckc8JKq62kUphKlNwRYQRzhaYydyOx35ubElg2Q7cHbx_811DFjWrraKqm0V3lh6hIwTkIOor-gY6JmJCSjujdATXBxxgqp_pQtzrsFAG1j6vGuArUIe6I3xzNQ9lW9g_-rZn9ABOXczE</recordid><startdate>201608</startdate><enddate>201608</enddate><creator>Mitake, Hiromichi</creator><creator>Fujii, Yuji</creator><creator>Nagai, Makoto</creator><creator>Ito, Naoto</creator><creator>Okadera, Kota</creator><creator>Okada, Kazuma</creator><creator>Nakagawa, Kento</creator><creator>Kishimoto, Mai</creator><creator>Mizutani, Tetsuya</creator><creator>Okazaki, Katsunori</creator><creator>Sakoda, Yoshihiro</creator><creator>Takada, Ayato</creator><creator>Sugiyama, Makoto</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7U9</scope><scope>H94</scope></search><sort><creationdate>201608</creationdate><title>Isolation of a sp. nov. Ljungan virus from wild birds in Japan</title><author>Mitake, Hiromichi ; Fujii, Yuji ; Nagai, Makoto ; Ito, Naoto ; Okadera, Kota ; Okada, Kazuma ; Nakagawa, Kento ; Kishimoto, Mai ; Mizutani, Tetsuya ; Okazaki, Katsunori ; Sakoda, Yoshihiro ; Takada, Ayato ; Sugiyama, Makoto</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c362t-b37b11f6dfd6c6084ac5b13f7d9dad9297ce7b5f17c74f8a296fc5b01446cb043</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Animals</topic><topic>Charadriiformes - virology</topic><topic>Feces - virology</topic><topic>Gene Order</topic><topic>Genome, Viral</topic><topic>Japan</topic><topic>Parechovirus - classification</topic><topic>Parechovirus - genetics</topic><topic>Parechovirus - isolation & purification</topic><topic>Phylogeny</topic><topic>Picornaviridae Infections - veterinary</topic><topic>Picornaviridae Infections - virology</topic><topic>RNA, Viral - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mitake, Hiromichi</creatorcontrib><creatorcontrib>Fujii, Yuji</creatorcontrib><creatorcontrib>Nagai, Makoto</creatorcontrib><creatorcontrib>Ito, Naoto</creatorcontrib><creatorcontrib>Okadera, Kota</creatorcontrib><creatorcontrib>Okada, Kazuma</creatorcontrib><creatorcontrib>Nakagawa, Kento</creatorcontrib><creatorcontrib>Kishimoto, Mai</creatorcontrib><creatorcontrib>Mizutani, Tetsuya</creatorcontrib><creatorcontrib>Okazaki, Katsunori</creatorcontrib><creatorcontrib>Sakoda, Yoshihiro</creatorcontrib><creatorcontrib>Takada, Ayato</creatorcontrib><creatorcontrib>Sugiyama, Makoto</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Virology and AIDS Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><jtitle>Journal of general virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mitake, Hiromichi</au><au>Fujii, Yuji</au><au>Nagai, Makoto</au><au>Ito, Naoto</au><au>Okadera, Kota</au><au>Okada, Kazuma</au><au>Nakagawa, Kento</au><au>Kishimoto, Mai</au><au>Mizutani, Tetsuya</au><au>Okazaki, Katsunori</au><au>Sakoda, Yoshihiro</au><au>Takada, Ayato</au><au>Sugiyama, Makoto</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Isolation of a sp. nov. Ljungan virus from wild birds in Japan</atitle><jtitle>Journal of general virology</jtitle><addtitle>J Gen Virol</addtitle><date>2016-08</date><risdate>2016</risdate><volume>97</volume><issue>8</issue><spage>1818</spage><epage>1822</epage><pages>1818-1822</pages><issn>0022-1317</issn><eissn>1465-2099</eissn><abstract>Ljungan virus (LV) has been isolated/detected from rodents in a limited area including European countries and the USA. In this study, we isolated an LV strain from faecal samples of wild birds that had been collected in Japan, and determined the nearly complete sequence of the genome. Sequence analyses showed that the isolate possesses an LV-like genomic organization: 5UTR-VP0-VP3-VP1-2A1-2A2-2B-2C-3A-3B-3C-3D-3UTR. Phylogenetic and similarity analyses based on the VP1 region indicated that the strain constitutes a novel genotype within LV. In addition, we identified species origin of the faeces as gull species by using the DNA barcoding technique. 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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Animals Charadriiformes - virology Feces - virology Gene Order Genome, Viral Japan Parechovirus - classification Parechovirus - genetics Parechovirus - isolation & purification Phylogeny Picornaviridae Infections - veterinary Picornaviridae Infections - virology RNA, Viral - genetics Sequence Analysis, DNA Sequence Homology |
| title | Isolation of a sp. nov. Ljungan virus from wild birds in Japan |
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