Genetic architecture of male floral traits required for hybrid wheat breeding
Key message This study revealed a complex genetic architecture of male floral traits in wheat, and Rht-D1 was identified as the only major QTL. Genome-wide prediction approaches but also phenotypic recurrent selection appear promising to increase outcrossing ability required for hybrid wheat seed pr...
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Veröffentlicht in: | Theoretical and applied genetics 2016-12, Vol.129 (12), p.2343-2357 |
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container_title | Theoretical and applied genetics |
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creator | Boeven, Philipp H. G. Longin, C. Friedrich H. Leiser, Willmar L. Kollers, Sonja Ebmeyer, Erhard Würschum, Tobias |
description | Key message
This study revealed a complex genetic architecture of male floral traits in wheat, and
Rht-D1
was identified as the only major QTL. Genome-wide prediction approaches but also phenotypic recurrent selection appear promising to increase outcrossing ability required for hybrid wheat seed production.
Hybrid wheat breeding is a promising approach to increase grain yield and yield stability. However, the identification of lines with favorable male floral characteristics required for hybrid seed production currently poses a severe bottleneck for hybrid wheat breeding. This study therefore aimed to unravel the genetic architecture of floral traits and to assess the potential of genomic approaches to accelerate their improvement. To this end, we employed a panel of 209 diverse winter wheat lines assessed for male floral traits and genotyped with genome-wide markers as well as for
Rht
-
B1
and
Rht
-
D1
. We found the highest proportion of explained genotypic variance for the
Rht
-
D1
locus (11–24 %), for which the dwarfing allele
Rht
-
D1b
had a negative effect on anther extrusion, visual anther extrusion and pollen mass. The genome-wide scan detected only few QTL with small or medium effects, indicating a complex genetic architecture. Consequently, marker-assisted selection yielded only moderate prediction abilities (0.44–0.63), mainly relying on
Rht
-
D1
. Genomic selection based on weighted ridge-regression best linear unbiased prediction achieved higher prediction abilities of up to 0.70 for anther extrusion. In conclusion, recurrent phenotypic selection appears most cost-effective for the initial improvement of floral traits in wheat, while genome-wide prediction approaches may be worthwhile when complete marker profiles are already available in a hybrid wheat breeding program. |
doi_str_mv | 10.1007/s00122-016-2771-6 |
format | Article |
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This study revealed a complex genetic architecture of male floral traits in wheat, and
Rht-D1
was identified as the only major QTL. Genome-wide prediction approaches but also phenotypic recurrent selection appear promising to increase outcrossing ability required for hybrid wheat seed production.
Hybrid wheat breeding is a promising approach to increase grain yield and yield stability. However, the identification of lines with favorable male floral characteristics required for hybrid seed production currently poses a severe bottleneck for hybrid wheat breeding. This study therefore aimed to unravel the genetic architecture of floral traits and to assess the potential of genomic approaches to accelerate their improvement. To this end, we employed a panel of 209 diverse winter wheat lines assessed for male floral traits and genotyped with genome-wide markers as well as for
Rht
-
B1
and
Rht
-
D1
. We found the highest proportion of explained genotypic variance for the
Rht
-
D1
locus (11–24 %), for which the dwarfing allele
Rht
-
D1b
had a negative effect on anther extrusion, visual anther extrusion and pollen mass. The genome-wide scan detected only few QTL with small or medium effects, indicating a complex genetic architecture. Consequently, marker-assisted selection yielded only moderate prediction abilities (0.44–0.63), mainly relying on
Rht
-
D1
. Genomic selection based on weighted ridge-regression best linear unbiased prediction achieved higher prediction abilities of up to 0.70 for anther extrusion. In conclusion, recurrent phenotypic selection appears most cost-effective for the initial improvement of floral traits in wheat, while genome-wide prediction approaches may be worthwhile when complete marker profiles are already available in a hybrid wheat breeding program.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-016-2771-6</identifier><identifier>PMID: 27553082</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agriculture ; Alleles ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Chromosome Mapping ; Flowers - genetics ; Gene expression ; Genetic aspects ; Genetic Association Studies ; Genomes ; Genomics ; Genotype ; Growth ; Life Sciences ; Observations ; Original Article ; Phenotype ; Plant Biochemistry ; Plant Breeding ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Plant reproduction ; Quantitative trait loci ; Triticum - genetics ; Triticum aestivum ; Wheat</subject><ispartof>Theoretical and applied genetics, 2016-12, Vol.129 (12), p.2343-2357</ispartof><rights>Springer-Verlag Berlin Heidelberg 2016</rights><rights>COPYRIGHT 2016 Springer</rights><rights>Theoretical and Applied Genetics is a copyright of Springer, 2016.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c572t-d392d50448cca6ad06f33694b39541936269d4c364812545aeea5e0198c5ba953</citedby><cites>FETCH-LOGICAL-c572t-d392d50448cca6ad06f33694b39541936269d4c364812545aeea5e0198c5ba953</cites><orcidid>0000-0003-1536-6606</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00122-016-2771-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00122-016-2771-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27553082$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Boeven, Philipp H. G.</creatorcontrib><creatorcontrib>Longin, C. Friedrich H.</creatorcontrib><creatorcontrib>Leiser, Willmar L.</creatorcontrib><creatorcontrib>Kollers, Sonja</creatorcontrib><creatorcontrib>Ebmeyer, Erhard</creatorcontrib><creatorcontrib>Würschum, Tobias</creatorcontrib><title>Genetic architecture of male floral traits required for hybrid wheat breeding</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><addtitle>Theor Appl Genet</addtitle><description>Key message
This study revealed a complex genetic architecture of male floral traits in wheat, and
Rht-D1
was identified as the only major QTL. Genome-wide prediction approaches but also phenotypic recurrent selection appear promising to increase outcrossing ability required for hybrid wheat seed production.
Hybrid wheat breeding is a promising approach to increase grain yield and yield stability. However, the identification of lines with favorable male floral characteristics required for hybrid seed production currently poses a severe bottleneck for hybrid wheat breeding. This study therefore aimed to unravel the genetic architecture of floral traits and to assess the potential of genomic approaches to accelerate their improvement. To this end, we employed a panel of 209 diverse winter wheat lines assessed for male floral traits and genotyped with genome-wide markers as well as for
Rht
-
B1
and
Rht
-
D1
. We found the highest proportion of explained genotypic variance for the
Rht
-
D1
locus (11–24 %), for which the dwarfing allele
Rht
-
D1b
had a negative effect on anther extrusion, visual anther extrusion and pollen mass. The genome-wide scan detected only few QTL with small or medium effects, indicating a complex genetic architecture. Consequently, marker-assisted selection yielded only moderate prediction abilities (0.44–0.63), mainly relying on
Rht
-
D1
. Genomic selection based on weighted ridge-regression best linear unbiased prediction achieved higher prediction abilities of up to 0.70 for anther extrusion. In conclusion, recurrent phenotypic selection appears most cost-effective for the initial improvement of floral traits in wheat, while genome-wide prediction approaches may be worthwhile when complete marker profiles are already available in a hybrid wheat breeding program.</description><subject>Agriculture</subject><subject>Alleles</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Chromosome Mapping</subject><subject>Flowers - genetics</subject><subject>Gene expression</subject><subject>Genetic aspects</subject><subject>Genetic Association Studies</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Genotype</subject><subject>Growth</subject><subject>Life Sciences</subject><subject>Observations</subject><subject>Original Article</subject><subject>Phenotype</subject><subject>Plant Biochemistry</subject><subject>Plant Breeding</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Genetics and Genomics</subject><subject>Plant reproduction</subject><subject>Quantitative trait loci</subject><subject>Triticum - genetics</subject><subject>Triticum aestivum</subject><subject>Wheat</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkltrFTEUhYMo9lj9Ab5IwBd9mLpznzyWorVQEbw8h0xmzzkpc2mTGWr_vRlOvRxRkDwEkm-tzdosQp4zOGEA5k0GYJxXwHTFjWGVfkA2TApecS75Q7IBkFApo_gReZLzFQBwBeIxOeJGKQE135AP5zjiHAP1KezijGFeEtKpo4PvkXb9lHxP5-TjnGnCmyUmbGk3Jbq7a1Js6e0O_UybhNjGcfuUPOp8n_HZ_X1Mvr57--XsfXX58fzi7PSyCsrwuWqF5a0CKesQvPYt6E4IbWUjrJLMCs21bWUQWtaMK6k8olcIzNZBNd4qcUxe7X2v03SzYJ7dEHPAvvcjTkt2rFZgtAUO_4FKYbXRoAv68g_0alrSWIKsFK-5qm39i9qWDbk4dlNZT1hN3ak0THAwch178heqnBaHGKYRu1jeDwSvDwSFmfHbvPVLzu7i86dDlu3ZkKacE3buOsXBpzvHwK3NcPtmuNIMtzbDreFe3IdbmgHbn4ofVSgA3wO5fI1bTL-l_6frd4HlviU</recordid><startdate>20161201</startdate><enddate>20161201</enddate><creator>Boeven, Philipp H. 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Friedrich H.</creator><creator>Leiser, Willmar L.</creator><creator>Kollers, Sonja</creator><creator>Ebmeyer, Erhard</creator><creator>Würschum, Tobias</creator><general>Springer Berlin Heidelberg</general><general>Springer</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-1536-6606</orcidid></search><sort><creationdate>20161201</creationdate><title>Genetic architecture of male floral traits required for hybrid wheat breeding</title><author>Boeven, Philipp H. G. ; Longin, C. Friedrich H. ; Leiser, Willmar L. ; Kollers, Sonja ; Ebmeyer, Erhard ; Würschum, Tobias</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c572t-d392d50448cca6ad06f33694b39541936269d4c364812545aeea5e0198c5ba953</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Agriculture</topic><topic>Alleles</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Chromosome Mapping</topic><topic>Flowers - genetics</topic><topic>Gene expression</topic><topic>Genetic aspects</topic><topic>Genetic Association Studies</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Genotype</topic><topic>Growth</topic><topic>Life Sciences</topic><topic>Observations</topic><topic>Original Article</topic><topic>Phenotype</topic><topic>Plant Biochemistry</topic><topic>Plant Breeding</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Genetics and Genomics</topic><topic>Plant reproduction</topic><topic>Quantitative trait loci</topic><topic>Triticum - genetics</topic><topic>Triticum aestivum</topic><topic>Wheat</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Boeven, Philipp H. G.</creatorcontrib><creatorcontrib>Longin, C. Friedrich H.</creatorcontrib><creatorcontrib>Leiser, Willmar L.</creatorcontrib><creatorcontrib>Kollers, Sonja</creatorcontrib><creatorcontrib>Ebmeyer, Erhard</creatorcontrib><creatorcontrib>Würschum, Tobias</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Theoretical and applied genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Boeven, Philipp H. G.</au><au>Longin, C. Friedrich H.</au><au>Leiser, Willmar L.</au><au>Kollers, Sonja</au><au>Ebmeyer, Erhard</au><au>Würschum, Tobias</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic architecture of male floral traits required for hybrid wheat breeding</atitle><jtitle>Theoretical and applied genetics</jtitle><stitle>Theor Appl Genet</stitle><addtitle>Theor Appl Genet</addtitle><date>2016-12-01</date><risdate>2016</risdate><volume>129</volume><issue>12</issue><spage>2343</spage><epage>2357</epage><pages>2343-2357</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><abstract>Key message
This study revealed a complex genetic architecture of male floral traits in wheat, and
Rht-D1
was identified as the only major QTL. Genome-wide prediction approaches but also phenotypic recurrent selection appear promising to increase outcrossing ability required for hybrid wheat seed production.
Hybrid wheat breeding is a promising approach to increase grain yield and yield stability. However, the identification of lines with favorable male floral characteristics required for hybrid seed production currently poses a severe bottleneck for hybrid wheat breeding. This study therefore aimed to unravel the genetic architecture of floral traits and to assess the potential of genomic approaches to accelerate their improvement. To this end, we employed a panel of 209 diverse winter wheat lines assessed for male floral traits and genotyped with genome-wide markers as well as for
Rht
-
B1
and
Rht
-
D1
. We found the highest proportion of explained genotypic variance for the
Rht
-
D1
locus (11–24 %), for which the dwarfing allele
Rht
-
D1b
had a negative effect on anther extrusion, visual anther extrusion and pollen mass. The genome-wide scan detected only few QTL with small or medium effects, indicating a complex genetic architecture. Consequently, marker-assisted selection yielded only moderate prediction abilities (0.44–0.63), mainly relying on
Rht
-
D1
. Genomic selection based on weighted ridge-regression best linear unbiased prediction achieved higher prediction abilities of up to 0.70 for anther extrusion. In conclusion, recurrent phenotypic selection appears most cost-effective for the initial improvement of floral traits in wheat, while genome-wide prediction approaches may be worthwhile when complete marker profiles are already available in a hybrid wheat breeding program.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>27553082</pmid><doi>10.1007/s00122-016-2771-6</doi><tpages>15</tpages><orcidid>https://orcid.org/0000-0003-1536-6606</orcidid></addata></record> |
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source | MEDLINE; Springer Nature - Complete Springer Journals |
subjects | Agriculture Alleles Biochemistry Biomedical and Life Sciences Biotechnology Chromosome Mapping Flowers - genetics Gene expression Genetic aspects Genetic Association Studies Genomes Genomics Genotype Growth Life Sciences Observations Original Article Phenotype Plant Biochemistry Plant Breeding Plant Breeding/Biotechnology Plant Genetics and Genomics Plant reproduction Quantitative trait loci Triticum - genetics Triticum aestivum Wheat |
title | Genetic architecture of male floral traits required for hybrid wheat breeding |
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