Structural basis for catalysis at the membrane-water interface
The membrane-water interface forms a uniquely heterogeneous and geometrically constrained environment for enzymatic catalysis. Integral membrane enzymes sample three environments – the uniformly hydrophobic interior of the membrane, the aqueous extramembrane region, and the fuzzy, amphipathic interf...
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Veröffentlicht in: | Biochimica et biophysica acta 2017-11, Vol.1862 (11), p.1368-1385 |
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creator | Dufrisne, Meagan Belcher Petrou, Vasileios I. Clarke, Oliver B. Mancia, Filippo |
description | The membrane-water interface forms a uniquely heterogeneous and geometrically constrained environment for enzymatic catalysis. Integral membrane enzymes sample three environments – the uniformly hydrophobic interior of the membrane, the aqueous extramembrane region, and the fuzzy, amphipathic interfacial region formed by the tightly packed headgroups of the components of the lipid bilayer. Depending on the nature of the substrates and the location of the site of chemical modification, catalysis may occur in each of these environments. The availability of structural information for alpha-helical enzyme families from each of these classes, as well as several beta-barrel enzymes from the bacterial outer membrane, has allowed us to review here the different ways in which each enzyme fold has adapted to the nature of the substrates, products, and the unique environment of the membrane. Our focus here is on enzymes that process lipidic substrates. This article is part of a Special Issue entitled: Bacterial Lipids edited by Russell E. Bishop.
•We review the current structural landscape of membrane enzymes utilizing lipidic substrates in diverse chemical reactions.•Diverse alpha-helical enzymes exhibit three main modes of catalysis: intramembrane, extramembrane, and interfacial.•Beta-barrel enzymes seem to lack diversity in fold, yet accommodate a variety of chemical reactions and substrates. |
doi_str_mv | 10.1016/j.bbalip.2016.11.011 |
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•We review the current structural landscape of membrane enzymes utilizing lipidic substrates in diverse chemical reactions.•Diverse alpha-helical enzymes exhibit three main modes of catalysis: intramembrane, extramembrane, and interfacial.•Beta-barrel enzymes seem to lack diversity in fold, yet accommodate a variety of chemical reactions and substrates.</description><subject>Bacteria - enzymology</subject><subject>Bacterial Proteins - chemistry</subject><subject>Bacterial Proteins - metabolism</subject><subject>Catalysis</subject><subject>Catalytic Domain</subject><subject>Cell Membrane - chemistry</subject><subject>Cell Membrane - enzymology</subject><subject>Hydrophobic and Hydrophilic Interactions</subject><subject>Membrane Lipids - chemistry</subject><subject>Membrane Lipids - metabolism</subject><subject>Models, Molecular</subject><subject>Protein Conformation, alpha-Helical</subject><subject>Protein Conformation, beta-Strand</subject><subject>Protein Folding</subject><subject>Structure-Activity Relationship</subject><subject>Substrate Specificity</subject><subject>Water - chemistry</subject><subject>Water - metabolism</subject><issn>1388-1981</issn><issn>0006-3002</issn><issn>1879-2618</issn><issn>1878-2434</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kMtO3TAQhi1UBJTyBhXKspukGTtx7A0SQqWthNRF6doaOxPwUS4H26Hi7fHRoZRuupmLZuafmY-xj1BXUIP8vKmsxdFvK56zCqCqAQ7YCahOl1yCepdjoVQJWsExex_jpq6hFaI9Yse80yC45ifs4mcKq0trwLGwGH0shiUUDhOOT7sMU5HuqZhosgFnKn9jolD4OdsBHX1ghwOOkc5e_Cn7df3l9upbefPj6_ery5vSNVKkknNsWy0ESBAN0gBO8o47TQOXCoTte9shgaJaEFoSQ4fSSiV0q3Ike3HKLva629VO1DuaU77YbIOfMDyZBb35tzL7e3O3PJq2aTSXbRb49CIQloeVYjKTj47GMT-1rNGAalolVA06tzb7VheWGAMNr2ugNjv0ZmP26M0OvQEwGX0eO3974uvQH9Z_f6AM6tFTMNF5mh31PpBLpl_8_zc8A2Tjl-A</recordid><startdate>20171101</startdate><enddate>20171101</enddate><creator>Dufrisne, Meagan Belcher</creator><creator>Petrou, Vasileios I.</creator><creator>Clarke, Oliver B.</creator><creator>Mancia, Filippo</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20171101</creationdate><title>Structural basis for catalysis at the membrane-water interface</title><author>Dufrisne, Meagan Belcher ; Petrou, Vasileios I. ; Clarke, Oliver B. ; Mancia, Filippo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c463t-22a5593316134aef1c6272c9ef26813bddb7ae18e03eabe3f7a6b6839587a66d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Bacteria - enzymology</topic><topic>Bacterial Proteins - chemistry</topic><topic>Bacterial Proteins - metabolism</topic><topic>Catalysis</topic><topic>Catalytic Domain</topic><topic>Cell Membrane - chemistry</topic><topic>Cell Membrane - enzymology</topic><topic>Hydrophobic and Hydrophilic Interactions</topic><topic>Membrane Lipids - chemistry</topic><topic>Membrane Lipids - metabolism</topic><topic>Models, Molecular</topic><topic>Protein Conformation, alpha-Helical</topic><topic>Protein Conformation, beta-Strand</topic><topic>Protein Folding</topic><topic>Structure-Activity Relationship</topic><topic>Substrate Specificity</topic><topic>Water - chemistry</topic><topic>Water - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Dufrisne, Meagan Belcher</creatorcontrib><creatorcontrib>Petrou, Vasileios I.</creatorcontrib><creatorcontrib>Clarke, Oliver B.</creatorcontrib><creatorcontrib>Mancia, Filippo</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Biochimica et biophysica acta</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Dufrisne, Meagan Belcher</au><au>Petrou, Vasileios I.</au><au>Clarke, Oliver B.</au><au>Mancia, Filippo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structural basis for catalysis at the membrane-water interface</atitle><jtitle>Biochimica et biophysica acta</jtitle><addtitle>Biochim Biophys Acta Mol Cell Biol Lipids</addtitle><date>2017-11-01</date><risdate>2017</risdate><volume>1862</volume><issue>11</issue><spage>1368</spage><epage>1385</epage><pages>1368-1385</pages><issn>1388-1981</issn><issn>0006-3002</issn><eissn>1879-2618</eissn><eissn>1878-2434</eissn><abstract>The membrane-water interface forms a uniquely heterogeneous and geometrically constrained environment for enzymatic catalysis. Integral membrane enzymes sample three environments – the uniformly hydrophobic interior of the membrane, the aqueous extramembrane region, and the fuzzy, amphipathic interfacial region formed by the tightly packed headgroups of the components of the lipid bilayer. Depending on the nature of the substrates and the location of the site of chemical modification, catalysis may occur in each of these environments. The availability of structural information for alpha-helical enzyme families from each of these classes, as well as several beta-barrel enzymes from the bacterial outer membrane, has allowed us to review here the different ways in which each enzyme fold has adapted to the nature of the substrates, products, and the unique environment of the membrane. Our focus here is on enzymes that process lipidic substrates. This article is part of a Special Issue entitled: Bacterial Lipids edited by Russell E. Bishop.
•We review the current structural landscape of membrane enzymes utilizing lipidic substrates in diverse chemical reactions.•Diverse alpha-helical enzymes exhibit three main modes of catalysis: intramembrane, extramembrane, and interfacial.•Beta-barrel enzymes seem to lack diversity in fold, yet accommodate a variety of chemical reactions and substrates.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>27913292</pmid><doi>10.1016/j.bbalip.2016.11.011</doi><tpages>18</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Bacteria - enzymology Bacterial Proteins - chemistry Bacterial Proteins - metabolism Catalysis Catalytic Domain Cell Membrane - chemistry Cell Membrane - enzymology Hydrophobic and Hydrophilic Interactions Membrane Lipids - chemistry Membrane Lipids - metabolism Models, Molecular Protein Conformation, alpha-Helical Protein Conformation, beta-Strand Protein Folding Structure-Activity Relationship Substrate Specificity Water - chemistry Water - metabolism |
title | Structural basis for catalysis at the membrane-water interface |
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