Polaribacter haliotis sp. nov., isolated from the gut of abalone Haliotis discus hannai
A Gram-stain-negative, aerobic, non-motile and coccoid, ovoid or rod-shaped bacterial strain, designated RA4-7T, was isolated from the gut of an abalone (Haliotis discus hannai) collected from the sea around Jeju island, South Korea, and subjected to a polyphasic taxonomic study. RA4-7T grew optimal...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2016-12, Vol.66 (12), p.5562-5567 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Kim, Young-Ok Park, In-Suk Park, Sooyeon Nam, Bo-Hye Park, Ji-Min Kim, Dong-Gyun Yoon, Jung-Hoon |
| description | A Gram-stain-negative, aerobic, non-motile and coccoid, ovoid or rod-shaped bacterial strain, designated RA4-7T, was isolated from the gut of an abalone (Haliotis discus hannai) collected from the sea around Jeju island, South Korea, and subjected to a polyphasic taxonomic study. RA4-7T grew optimally at 25 °C, at pH 7.0-7.5 and in the presence of 2.0-3.0 % (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that RA4-7T represented a member of the genus Polaribacter. RA4-7T exhibited 16S rRNA gene sequence similarity values of 97.64 and 97.23 % to Polaribacter atrinae WP25T and Polaribacter dokdonensis DSW-5T, respectively, and of 93.83-96.99 % to the type strains of the other species of the genus Polaribacter. RA4-7T contained MK-6 as the predominant menaquinone and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), iso-C15 : 0 3-OH and iso-C15 : 0as the major fatty acids. The major polar lipids detected in RA4-7T were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of RA4-7T was 30.5 mol% and its DNA-DNA relatedness values with the type strains of P. atrinae and P. dokdonensis were 16 and 11 %, respectively. Differential phenotypic properties, in combination with its phylogenetic and genetic distinctiveness, revealed that RA4-7T is separated from species of the genus Polaribacter with validly published names. On the basis of the data presented, RA4-7T represented a novel species of the genus Polaribacter, for which the name Polaribacterhaliotis sp. nov. is proposed. The type strain is RA4-7T (=KCTC 52418T=NBRC 112383T). |
| doi_str_mv | 10.1099/ijsem.0.001557 |
| format | Article |
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RA4-7T grew optimally at 25 °C, at pH 7.0-7.5 and in the presence of 2.0-3.0 % (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that RA4-7T represented a member of the genus Polaribacter. RA4-7T exhibited 16S rRNA gene sequence similarity values of 97.64 and 97.23 % to Polaribacter atrinae WP25T and Polaribacter dokdonensis DSW-5T, respectively, and of 93.83-96.99 % to the type strains of the other species of the genus Polaribacter. RA4-7T contained MK-6 as the predominant menaquinone and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), iso-C15 : 0 3-OH and iso-C15 : 0as the major fatty acids. The major polar lipids detected in RA4-7T were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of RA4-7T was 30.5 mol% and its DNA-DNA relatedness values with the type strains of P. atrinae and P. dokdonensis were 16 and 11 %, respectively. Differential phenotypic properties, in combination with its phylogenetic and genetic distinctiveness, revealed that RA4-7T is separated from species of the genus Polaribacter with validly published names. On the basis of the data presented, RA4-7T represented a novel species of the genus Polaribacter, for which the name Polaribacterhaliotis sp. nov. is proposed. The type strain is RA4-7T (=KCTC 52418T=NBRC 112383T).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.001557</identifier><identifier>PMID: 27902190</identifier><language>eng</language><publisher>England</publisher><subject>Animals ; Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Flavobacteriaceae - classification ; Flavobacteriaceae - genetics ; Flavobacteriaceae - isolation & purification ; Gastropoda - microbiology ; Nucleic Acid Hybridization ; Phosphatidylethanolamines - chemistry ; Phylogeny ; Republic of Korea ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Vitamin K 2 - analogs & derivatives ; Vitamin K 2 - chemistry</subject><ispartof>International journal of systematic and evolutionary microbiology, 2016-12, Vol.66 (12), p.5562-5567</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c335t-fbeb156e4f08155961ee692577bf1d80f1e6a1309841a9dd7dc3a1447384f12f3</citedby><cites>FETCH-LOGICAL-c335t-fbeb156e4f08155961ee692577bf1d80f1e6a1309841a9dd7dc3a1447384f12f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27902190$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kim, Young-Ok</creatorcontrib><creatorcontrib>Park, In-Suk</creatorcontrib><creatorcontrib>Park, Sooyeon</creatorcontrib><creatorcontrib>Nam, Bo-Hye</creatorcontrib><creatorcontrib>Park, Ji-Min</creatorcontrib><creatorcontrib>Kim, Dong-Gyun</creatorcontrib><creatorcontrib>Yoon, Jung-Hoon</creatorcontrib><title>Polaribacter haliotis sp. nov., isolated from the gut of abalone Haliotis discus hannai</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A Gram-stain-negative, aerobic, non-motile and coccoid, ovoid or rod-shaped bacterial strain, designated RA4-7T, was isolated from the gut of an abalone (Haliotis discus hannai) collected from the sea around Jeju island, South Korea, and subjected to a polyphasic taxonomic study. RA4-7T grew optimally at 25 °C, at pH 7.0-7.5 and in the presence of 2.0-3.0 % (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that RA4-7T represented a member of the genus Polaribacter. RA4-7T exhibited 16S rRNA gene sequence similarity values of 97.64 and 97.23 % to Polaribacter atrinae WP25T and Polaribacter dokdonensis DSW-5T, respectively, and of 93.83-96.99 % to the type strains of the other species of the genus Polaribacter. RA4-7T contained MK-6 as the predominant menaquinone and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), iso-C15 : 0 3-OH and iso-C15 : 0as the major fatty acids. The major polar lipids detected in RA4-7T were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of RA4-7T was 30.5 mol% and its DNA-DNA relatedness values with the type strains of P. atrinae and P. dokdonensis were 16 and 11 %, respectively. Differential phenotypic properties, in combination with its phylogenetic and genetic distinctiveness, revealed that RA4-7T is separated from species of the genus Polaribacter with validly published names. On the basis of the data presented, RA4-7T represented a novel species of the genus Polaribacter, for which the name Polaribacterhaliotis sp. nov. is proposed. The type strain is RA4-7T (=KCTC 52418T=NBRC 112383T).</description><subject>Animals</subject><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Flavobacteriaceae - classification</subject><subject>Flavobacteriaceae - genetics</subject><subject>Flavobacteriaceae - isolation & purification</subject><subject>Gastropoda - microbiology</subject><subject>Nucleic Acid Hybridization</subject><subject>Phosphatidylethanolamines - chemistry</subject><subject>Phylogeny</subject><subject>Republic of Korea</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Vitamin K 2 - analogs & derivatives</subject><subject>Vitamin K 2 - chemistry</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kD1PwzAQhi0EoqWwMiKPDCTYsePEI6oKRaoEA4jRcpIzdZXExU6Q-PcY-qEb7obnXt09CF1TklIi5b3dBOhSkhJC87w4QVPKhUhywvjpcc7EBF2EsIkMF4Sco0lWSJJRSabo49W12ttK1wN4vNatdYMNOGxT3Lvv9A7bEIEBGmy86_CwBvw5DtgZrCvduh7w8rDT2FCPIWb0vbaX6MzoNsDVvs_Q--Pibb5MVi9Pz_OHVVIzlg-JqaCiuQBuSBkfkIICCJnlRVEZ2pTEUBCaMiJLTrVsmqKpmaacF6zkhmaGzdDtLnfr3dcIYVBdPAPaVvfgxqBoyfMsFuMRTXdo7V0IHozaettp_6MoUX8y1b9MRdROZly42WePVQfNET_YY78V-XAY</recordid><startdate>201612</startdate><enddate>201612</enddate><creator>Kim, Young-Ok</creator><creator>Park, In-Suk</creator><creator>Park, Sooyeon</creator><creator>Nam, Bo-Hye</creator><creator>Park, Ji-Min</creator><creator>Kim, Dong-Gyun</creator><creator>Yoon, Jung-Hoon</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>201612</creationdate><title>Polaribacter haliotis sp. nov., isolated from the gut of abalone Haliotis discus hannai</title><author>Kim, Young-Ok ; Park, In-Suk ; Park, Sooyeon ; Nam, Bo-Hye ; Park, Ji-Min ; Kim, Dong-Gyun ; Yoon, Jung-Hoon</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-fbeb156e4f08155961ee692577bf1d80f1e6a1309841a9dd7dc3a1447384f12f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Animals</topic><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Flavobacteriaceae - classification</topic><topic>Flavobacteriaceae - genetics</topic><topic>Flavobacteriaceae - isolation & purification</topic><topic>Gastropoda - microbiology</topic><topic>Nucleic Acid Hybridization</topic><topic>Phosphatidylethanolamines - chemistry</topic><topic>Phylogeny</topic><topic>Republic of Korea</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Vitamin K 2 - analogs & derivatives</topic><topic>Vitamin K 2 - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, Young-Ok</creatorcontrib><creatorcontrib>Park, In-Suk</creatorcontrib><creatorcontrib>Park, Sooyeon</creatorcontrib><creatorcontrib>Nam, Bo-Hye</creatorcontrib><creatorcontrib>Park, Ji-Min</creatorcontrib><creatorcontrib>Kim, Dong-Gyun</creatorcontrib><creatorcontrib>Yoon, Jung-Hoon</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kim, Young-Ok</au><au>Park, In-Suk</au><au>Park, Sooyeon</au><au>Nam, Bo-Hye</au><au>Park, Ji-Min</au><au>Kim, Dong-Gyun</au><au>Yoon, Jung-Hoon</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Polaribacter haliotis sp. nov., isolated from the gut of abalone Haliotis discus hannai</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2016-12</date><risdate>2016</risdate><volume>66</volume><issue>12</issue><spage>5562</spage><epage>5567</epage><pages>5562-5567</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A Gram-stain-negative, aerobic, non-motile and coccoid, ovoid or rod-shaped bacterial strain, designated RA4-7T, was isolated from the gut of an abalone (Haliotis discus hannai) collected from the sea around Jeju island, South Korea, and subjected to a polyphasic taxonomic study. RA4-7T grew optimally at 25 °C, at pH 7.0-7.5 and in the presence of 2.0-3.0 % (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that RA4-7T represented a member of the genus Polaribacter. RA4-7T exhibited 16S rRNA gene sequence similarity values of 97.64 and 97.23 % to Polaribacter atrinae WP25T and Polaribacter dokdonensis DSW-5T, respectively, and of 93.83-96.99 % to the type strains of the other species of the genus Polaribacter. RA4-7T contained MK-6 as the predominant menaquinone and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), iso-C15 : 0 3-OH and iso-C15 : 0as the major fatty acids. The major polar lipids detected in RA4-7T were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of RA4-7T was 30.5 mol% and its DNA-DNA relatedness values with the type strains of P. atrinae and P. dokdonensis were 16 and 11 %, respectively. Differential phenotypic properties, in combination with its phylogenetic and genetic distinctiveness, revealed that RA4-7T is separated from species of the genus Polaribacter with validly published names. On the basis of the data presented, RA4-7T represented a novel species of the genus Polaribacter, for which the name Polaribacterhaliotis sp. nov. is proposed. The type strain is RA4-7T (=KCTC 52418T=NBRC 112383T).</abstract><cop>England</cop><pmid>27902190</pmid><doi>10.1099/ijsem.0.001557</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Animals Bacterial Typing Techniques Base Composition DNA, Bacterial - genetics Fatty Acids - chemistry Flavobacteriaceae - classification Flavobacteriaceae - genetics Flavobacteriaceae - isolation & purification Gastropoda - microbiology Nucleic Acid Hybridization Phosphatidylethanolamines - chemistry Phylogeny Republic of Korea RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Vitamin K 2 - analogs & derivatives Vitamin K 2 - chemistry |
| title | Polaribacter haliotis sp. nov., isolated from the gut of abalone Haliotis discus hannai |
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