Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population
Dermatomyositis (DM) is a polygenic disorder characterized by inflammation of skeletal muscle and skin. To date, the exact etiopathogenesis of DM remains elusive. To explore the genetic basis of DM, we conducted genome‐wide genotyping analysis of 127 patients and 1566 healthy controls by Illumina Hu...
Gespeichert in:
Veröffentlicht in: | Journal of dermatology 2016-11, Vol.43 (11), p.1307-1313 |
---|---|
Hauptverfasser: | , , , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 1313 |
---|---|
container_issue | 11 |
container_start_page | 1307 |
container_title | Journal of dermatology |
container_volume | 43 |
creator | Zhang, Chang-E Li, Yang Wang, Zai-Xing Gao, Jin-Ping Zhang, Xiao-Guang Zuo, Xian-Bo Sheng, Yu-Jun Chen, Gang Sun, Liang-Dan Zhang, Xue-Jun Xu, Jin-Hua Yang, Sen |
description | Dermatomyositis (DM) is a polygenic disorder characterized by inflammation of skeletal muscle and skin. To date, the exact etiopathogenesis of DM remains elusive. To explore the genetic basis of DM, we conducted genome‐wide genotyping analysis of 127 patients and 1566 healthy controls by Illumina Human OmniZhongHua‐8 BeadChips in the Chinese Han population. We investigated whether the three SNP (rs7750458, rs9501251 and rs9500928) at 6p21.32 in the HLA‐DPB1 gene were significantly associated with DM (P < 5 × 10−8) and identified two susceptibility loci at 7q34 (PIP, rs9986765, P = 7.45 × 10−7, odds ratio [OR] = 2.71) and 10q24.2 (CPN1, rs3750716, P = 9.04 × 10−7, OR = 4.39) with suggestive evidence. We imputed 6674 classical human leukocyte antigen (HLA) alleles, amino acids and SNP from the discovery dataset, and stepwise analysis revealed that HLA‐DPB1*17 in class II HLA genes were significantly associated with DM susceptibility. This study represents the first genome‐wide association study (GWAS) of DM in the Chinese Han population. For the first time, HLA‐DPB1 was found to be associated with DM in this population. Moreover, we identified two novel suggestive susceptibility loci (PIP and CPN1) and confirmed four previously reported genes (DMB, DQA1, DQB1 and DRB1) having potential associations with DM in the Chinese Han population. Our GWAS results in this population should provide important information regarding the genetic etiopathogenesis of DM and facilitate the development of new therapies for the treatment of DM and the prevention of DM progression. |
doi_str_mv | 10.1111/1346-8138.13397 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_proquest_miscellaneous_1837318863</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1826683689</sourcerecordid><originalsourceid>FETCH-LOGICAL-i3807-22118ffc6d0010b8080f2638a6146e3108bebb203e6ad1d7388f90a419a061393</originalsourceid><addsrcrecordid>eNqNkTtv2zAUhYmgReI4mbMFArJ0UXovr0VSo-M83MJIG7R5bARlUTAdPVxRgut_X8l2PXQqFxI83zm45GHsAuEau_UZaSRChaSukSiWR2xwuPnABkAqCvkI5Ak79X4JwOMI4ZidcIkRxRQN2OOLqZ1pXFUGpgmms3F4-_0GA-cD43017ySbBmvXLILU1oVpqmJTedd0uiuDycKV1ttgVa3afBtyxj5mJvf2fL8P2fP93c_JNJx9e_gyGc9CRwpkyDmiyrK5SAEQEgUKMi5IGYEjYQlBJTZJOJAVJsVUklJZDGaEsQGB3eRD9mmXu6qrX631jS6cn9s8N6WtWq9RkSRUStB_oFwIRUL1qVf_oMuqrcvuIX0gjyRy6KnLPdUmhU31qnaFqTf676d2QLQD1i63m4OOoPvOdN-Q7hvS287019u77aHzhTuf8439ffCZ-l0LSTLSr48POhIQT9-efmigP6Llk6k</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1832571209</pqid></control><display><type>article</type><title>Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population</title><source>MEDLINE</source><source>Wiley Online Library Journals Frontfile Complete</source><creator>Zhang, Chang-E ; Li, Yang ; Wang, Zai-Xing ; Gao, Jin-Ping ; Zhang, Xiao-Guang ; Zuo, Xian-Bo ; Sheng, Yu-Jun ; Chen, Gang ; Sun, Liang-Dan ; Zhang, Xue-Jun ; Xu, Jin-Hua ; Yang, Sen</creator><creatorcontrib>Zhang, Chang-E ; Li, Yang ; Wang, Zai-Xing ; Gao, Jin-Ping ; Zhang, Xiao-Guang ; Zuo, Xian-Bo ; Sheng, Yu-Jun ; Chen, Gang ; Sun, Liang-Dan ; Zhang, Xue-Jun ; Xu, Jin-Hua ; Yang, Sen</creatorcontrib><description>Dermatomyositis (DM) is a polygenic disorder characterized by inflammation of skeletal muscle and skin. To date, the exact etiopathogenesis of DM remains elusive. To explore the genetic basis of DM, we conducted genome‐wide genotyping analysis of 127 patients and 1566 healthy controls by Illumina Human OmniZhongHua‐8 BeadChips in the Chinese Han population. We investigated whether the three SNP (rs7750458, rs9501251 and rs9500928) at 6p21.32 in the HLA‐DPB1 gene were significantly associated with DM (P < 5 × 10−8) and identified two susceptibility loci at 7q34 (PIP, rs9986765, P = 7.45 × 10−7, odds ratio [OR] = 2.71) and 10q24.2 (CPN1, rs3750716, P = 9.04 × 10−7, OR = 4.39) with suggestive evidence. We imputed 6674 classical human leukocyte antigen (HLA) alleles, amino acids and SNP from the discovery dataset, and stepwise analysis revealed that HLA‐DPB1*17 in class II HLA genes were significantly associated with DM susceptibility. This study represents the first genome‐wide association study (GWAS) of DM in the Chinese Han population. For the first time, HLA‐DPB1 was found to be associated with DM in this population. Moreover, we identified two novel suggestive susceptibility loci (PIP and CPN1) and confirmed four previously reported genes (DMB, DQA1, DQB1 and DRB1) having potential associations with DM in the Chinese Han population. Our GWAS results in this population should provide important information regarding the genetic etiopathogenesis of DM and facilitate the development of new therapies for the treatment of DM and the prevention of DM progression.</description><identifier>ISSN: 0385-2407</identifier><identifier>EISSN: 1346-8138</identifier><identifier>DOI: 10.1111/1346-8138.13397</identifier><identifier>PMID: 27153935</identifier><language>eng</language><publisher>England: Blackwell Publishing Ltd</publisher><subject>Adult ; Aged ; Asian Continental Ancestry Group - genetics ; Case-Control Studies ; China ; Chinese Han population ; dermatomyositis ; Dermatomyositis - immunology ; Female ; genome-wide association study ; HLA-DP beta-Chains - genetics ; HLA-DPB1 ; Humans ; Male ; Middle Aged ; Polymorphism, Single Nucleotide ; variation</subject><ispartof>Journal of dermatology, 2016-11, Vol.43 (11), p.1307-1313</ispartof><rights>2016 Japanese Dermatological Association</rights><rights>2016 Japanese Dermatological Association.</rights><rights>Copyright © 2016 Japanese Dermatological Association</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2F1346-8138.13397$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2F1346-8138.13397$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27153935$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Chang-E</creatorcontrib><creatorcontrib>Li, Yang</creatorcontrib><creatorcontrib>Wang, Zai-Xing</creatorcontrib><creatorcontrib>Gao, Jin-Ping</creatorcontrib><creatorcontrib>Zhang, Xiao-Guang</creatorcontrib><creatorcontrib>Zuo, Xian-Bo</creatorcontrib><creatorcontrib>Sheng, Yu-Jun</creatorcontrib><creatorcontrib>Chen, Gang</creatorcontrib><creatorcontrib>Sun, Liang-Dan</creatorcontrib><creatorcontrib>Zhang, Xue-Jun</creatorcontrib><creatorcontrib>Xu, Jin-Hua</creatorcontrib><creatorcontrib>Yang, Sen</creatorcontrib><title>Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population</title><title>Journal of dermatology</title><addtitle>J Dermatol</addtitle><description>Dermatomyositis (DM) is a polygenic disorder characterized by inflammation of skeletal muscle and skin. To date, the exact etiopathogenesis of DM remains elusive. To explore the genetic basis of DM, we conducted genome‐wide genotyping analysis of 127 patients and 1566 healthy controls by Illumina Human OmniZhongHua‐8 BeadChips in the Chinese Han population. We investigated whether the three SNP (rs7750458, rs9501251 and rs9500928) at 6p21.32 in the HLA‐DPB1 gene were significantly associated with DM (P < 5 × 10−8) and identified two susceptibility loci at 7q34 (PIP, rs9986765, P = 7.45 × 10−7, odds ratio [OR] = 2.71) and 10q24.2 (CPN1, rs3750716, P = 9.04 × 10−7, OR = 4.39) with suggestive evidence. We imputed 6674 classical human leukocyte antigen (HLA) alleles, amino acids and SNP from the discovery dataset, and stepwise analysis revealed that HLA‐DPB1*17 in class II HLA genes were significantly associated with DM susceptibility. This study represents the first genome‐wide association study (GWAS) of DM in the Chinese Han population. For the first time, HLA‐DPB1 was found to be associated with DM in this population. Moreover, we identified two novel suggestive susceptibility loci (PIP and CPN1) and confirmed four previously reported genes (DMB, DQA1, DQB1 and DRB1) having potential associations with DM in the Chinese Han population. Our GWAS results in this population should provide important information regarding the genetic etiopathogenesis of DM and facilitate the development of new therapies for the treatment of DM and the prevention of DM progression.</description><subject>Adult</subject><subject>Aged</subject><subject>Asian Continental Ancestry Group - genetics</subject><subject>Case-Control Studies</subject><subject>China</subject><subject>Chinese Han population</subject><subject>dermatomyositis</subject><subject>Dermatomyositis - immunology</subject><subject>Female</subject><subject>genome-wide association study</subject><subject>HLA-DP beta-Chains - genetics</subject><subject>HLA-DPB1</subject><subject>Humans</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Polymorphism, Single Nucleotide</subject><subject>variation</subject><issn>0385-2407</issn><issn>1346-8138</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkTtv2zAUhYmgReI4mbMFArJ0UXovr0VSo-M83MJIG7R5bARlUTAdPVxRgut_X8l2PXQqFxI83zm45GHsAuEau_UZaSRChaSukSiWR2xwuPnABkAqCvkI5Ak79X4JwOMI4ZidcIkRxRQN2OOLqZ1pXFUGpgmms3F4-_0GA-cD43017ySbBmvXLILU1oVpqmJTedd0uiuDycKV1ttgVa3afBtyxj5mJvf2fL8P2fP93c_JNJx9e_gyGc9CRwpkyDmiyrK5SAEQEgUKMi5IGYEjYQlBJTZJOJAVJsVUklJZDGaEsQGB3eRD9mmXu6qrX631jS6cn9s8N6WtWq9RkSRUStB_oFwIRUL1qVf_oMuqrcvuIX0gjyRy6KnLPdUmhU31qnaFqTf676d2QLQD1i63m4OOoPvOdN-Q7hvS287019u77aHzhTuf8439ffCZ-l0LSTLSr48POhIQT9-efmigP6Llk6k</recordid><startdate>201611</startdate><enddate>201611</enddate><creator>Zhang, Chang-E</creator><creator>Li, Yang</creator><creator>Wang, Zai-Xing</creator><creator>Gao, Jin-Ping</creator><creator>Zhang, Xiao-Guang</creator><creator>Zuo, Xian-Bo</creator><creator>Sheng, Yu-Jun</creator><creator>Chen, Gang</creator><creator>Sun, Liang-Dan</creator><creator>Zhang, Xue-Jun</creator><creator>Xu, Jin-Hua</creator><creator>Yang, Sen</creator><general>Blackwell Publishing Ltd</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7T5</scope><scope>H94</scope><scope>K9.</scope><scope>7X8</scope></search><sort><creationdate>201611</creationdate><title>Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population</title><author>Zhang, Chang-E ; Li, Yang ; Wang, Zai-Xing ; Gao, Jin-Ping ; Zhang, Xiao-Guang ; Zuo, Xian-Bo ; Sheng, Yu-Jun ; Chen, Gang ; Sun, Liang-Dan ; Zhang, Xue-Jun ; Xu, Jin-Hua ; Yang, Sen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-i3807-22118ffc6d0010b8080f2638a6146e3108bebb203e6ad1d7388f90a419a061393</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Asian Continental Ancestry Group - genetics</topic><topic>Case-Control Studies</topic><topic>China</topic><topic>Chinese Han population</topic><topic>dermatomyositis</topic><topic>Dermatomyositis - immunology</topic><topic>Female</topic><topic>genome-wide association study</topic><topic>HLA-DP beta-Chains - genetics</topic><topic>HLA-DPB1</topic><topic>Humans</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Polymorphism, Single Nucleotide</topic><topic>variation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Chang-E</creatorcontrib><creatorcontrib>Li, Yang</creatorcontrib><creatorcontrib>Wang, Zai-Xing</creatorcontrib><creatorcontrib>Gao, Jin-Ping</creatorcontrib><creatorcontrib>Zhang, Xiao-Guang</creatorcontrib><creatorcontrib>Zuo, Xian-Bo</creatorcontrib><creatorcontrib>Sheng, Yu-Jun</creatorcontrib><creatorcontrib>Chen, Gang</creatorcontrib><creatorcontrib>Sun, Liang-Dan</creatorcontrib><creatorcontrib>Zhang, Xue-Jun</creatorcontrib><creatorcontrib>Xu, Jin-Hua</creatorcontrib><creatorcontrib>Yang, Sen</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Immunology Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of dermatology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Chang-E</au><au>Li, Yang</au><au>Wang, Zai-Xing</au><au>Gao, Jin-Ping</au><au>Zhang, Xiao-Guang</au><au>Zuo, Xian-Bo</au><au>Sheng, Yu-Jun</au><au>Chen, Gang</au><au>Sun, Liang-Dan</au><au>Zhang, Xue-Jun</au><au>Xu, Jin-Hua</au><au>Yang, Sen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population</atitle><jtitle>Journal of dermatology</jtitle><addtitle>J Dermatol</addtitle><date>2016-11</date><risdate>2016</risdate><volume>43</volume><issue>11</issue><spage>1307</spage><epage>1313</epage><pages>1307-1313</pages><issn>0385-2407</issn><eissn>1346-8138</eissn><abstract>Dermatomyositis (DM) is a polygenic disorder characterized by inflammation of skeletal muscle and skin. To date, the exact etiopathogenesis of DM remains elusive. To explore the genetic basis of DM, we conducted genome‐wide genotyping analysis of 127 patients and 1566 healthy controls by Illumina Human OmniZhongHua‐8 BeadChips in the Chinese Han population. We investigated whether the three SNP (rs7750458, rs9501251 and rs9500928) at 6p21.32 in the HLA‐DPB1 gene were significantly associated with DM (P < 5 × 10−8) and identified two susceptibility loci at 7q34 (PIP, rs9986765, P = 7.45 × 10−7, odds ratio [OR] = 2.71) and 10q24.2 (CPN1, rs3750716, P = 9.04 × 10−7, OR = 4.39) with suggestive evidence. We imputed 6674 classical human leukocyte antigen (HLA) alleles, amino acids and SNP from the discovery dataset, and stepwise analysis revealed that HLA‐DPB1*17 in class II HLA genes were significantly associated with DM susceptibility. This study represents the first genome‐wide association study (GWAS) of DM in the Chinese Han population. For the first time, HLA‐DPB1 was found to be associated with DM in this population. Moreover, we identified two novel suggestive susceptibility loci (PIP and CPN1) and confirmed four previously reported genes (DMB, DQA1, DQB1 and DRB1) having potential associations with DM in the Chinese Han population. Our GWAS results in this population should provide important information regarding the genetic etiopathogenesis of DM and facilitate the development of new therapies for the treatment of DM and the prevention of DM progression.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>27153935</pmid><doi>10.1111/1346-8138.13397</doi><tpages>7</tpages></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0385-2407 |
ispartof | Journal of dermatology, 2016-11, Vol.43 (11), p.1307-1313 |
issn | 0385-2407 1346-8138 |
language | eng |
recordid | cdi_proquest_miscellaneous_1837318863 |
source | MEDLINE; Wiley Online Library Journals Frontfile Complete |
subjects | Adult Aged Asian Continental Ancestry Group - genetics Case-Control Studies China Chinese Han population dermatomyositis Dermatomyositis - immunology Female genome-wide association study HLA-DP beta-Chains - genetics HLA-DPB1 Humans Male Middle Aged Polymorphism, Single Nucleotide variation |
title | Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-03T11%3A13%3A34IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Variation%20at%20HLA-DPB1%20is%20associated%20with%20dermatomyositis%20in%20Chinese%20population&rft.jtitle=Journal%20of%20dermatology&rft.au=Zhang,%20Chang-E&rft.date=2016-11&rft.volume=43&rft.issue=11&rft.spage=1307&rft.epage=1313&rft.pages=1307-1313&rft.issn=0385-2407&rft.eissn=1346-8138&rft_id=info:doi/10.1111/1346-8138.13397&rft_dat=%3Cproquest_pubme%3E1826683689%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1832571209&rft_id=info:pmid/27153935&rfr_iscdi=true |