Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population

Dermatomyositis (DM) is a polygenic disorder characterized by inflammation of skeletal muscle and skin. To date, the exact etiopathogenesis of DM remains elusive. To explore the genetic basis of DM, we conducted genome‐wide genotyping analysis of 127 patients and 1566 healthy controls by Illumina Hu...

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Veröffentlicht in:Journal of dermatology 2016-11, Vol.43 (11), p.1307-1313
Hauptverfasser: Zhang, Chang-E, Li, Yang, Wang, Zai-Xing, Gao, Jin-Ping, Zhang, Xiao-Guang, Zuo, Xian-Bo, Sheng, Yu-Jun, Chen, Gang, Sun, Liang-Dan, Zhang, Xue-Jun, Xu, Jin-Hua, Yang, Sen
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container_end_page 1313
container_issue 11
container_start_page 1307
container_title Journal of dermatology
container_volume 43
creator Zhang, Chang-E
Li, Yang
Wang, Zai-Xing
Gao, Jin-Ping
Zhang, Xiao-Guang
Zuo, Xian-Bo
Sheng, Yu-Jun
Chen, Gang
Sun, Liang-Dan
Zhang, Xue-Jun
Xu, Jin-Hua
Yang, Sen
description Dermatomyositis (DM) is a polygenic disorder characterized by inflammation of skeletal muscle and skin. To date, the exact etiopathogenesis of DM remains elusive. To explore the genetic basis of DM, we conducted genome‐wide genotyping analysis of 127 patients and 1566 healthy controls by Illumina Human OmniZhongHua‐8 BeadChips in the Chinese Han population. We investigated whether the three SNP (rs7750458, rs9501251 and rs9500928) at 6p21.32 in the HLA‐DPB1 gene were significantly associated with DM (P < 5 × 10−8) and identified two susceptibility loci at 7q34 (PIP, rs9986765, P = 7.45 × 10−7, odds ratio [OR] = 2.71) and 10q24.2 (CPN1, rs3750716, P = 9.04 × 10−7, OR = 4.39) with suggestive evidence. We imputed 6674 classical human leukocyte antigen (HLA) alleles, amino acids and SNP from the discovery dataset, and stepwise analysis revealed that HLA‐DPB1*17 in class II HLA genes were significantly associated with DM susceptibility. This study represents the first genome‐wide association study (GWAS) of DM in the Chinese Han population. For the first time, HLA‐DPB1 was found to be associated with DM in this population. Moreover, we identified two novel suggestive susceptibility loci (PIP and CPN1) and confirmed four previously reported genes (DMB, DQA1, DQB1 and DRB1) having potential associations with DM in the Chinese Han population. Our GWAS results in this population should provide important information regarding the genetic etiopathogenesis of DM and facilitate the development of new therapies for the treatment of DM and the prevention of DM progression.
doi_str_mv 10.1111/1346-8138.13397
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To date, the exact etiopathogenesis of DM remains elusive. To explore the genetic basis of DM, we conducted genome‐wide genotyping analysis of 127 patients and 1566 healthy controls by Illumina Human OmniZhongHua‐8 BeadChips in the Chinese Han population. We investigated whether the three SNP (rs7750458, rs9501251 and rs9500928) at 6p21.32 in the HLA‐DPB1 gene were significantly associated with DM (P &lt; 5 × 10−8) and identified two susceptibility loci at 7q34 (PIP, rs9986765, P = 7.45 × 10−7, odds ratio [OR] = 2.71) and 10q24.2 (CPN1, rs3750716, P = 9.04 × 10−7, OR = 4.39) with suggestive evidence. We imputed 6674 classical human leukocyte antigen (HLA) alleles, amino acids and SNP from the discovery dataset, and stepwise analysis revealed that HLA‐DPB1*17 in class II HLA genes were significantly associated with DM susceptibility. This study represents the first genome‐wide association study (GWAS) of DM in the Chinese Han population. For the first time, HLA‐DPB1 was found to be associated with DM in this population. Moreover, we identified two novel suggestive susceptibility loci (PIP and CPN1) and confirmed four previously reported genes (DMB, DQA1, DQB1 and DRB1) having potential associations with DM in the Chinese Han population. Our GWAS results in this population should provide important information regarding the genetic etiopathogenesis of DM and facilitate the development of new therapies for the treatment of DM and the prevention of DM progression.</description><identifier>ISSN: 0385-2407</identifier><identifier>EISSN: 1346-8138</identifier><identifier>DOI: 10.1111/1346-8138.13397</identifier><identifier>PMID: 27153935</identifier><language>eng</language><publisher>England: Blackwell Publishing Ltd</publisher><subject>Adult ; Aged ; Asian Continental Ancestry Group - genetics ; Case-Control Studies ; China ; Chinese Han population ; dermatomyositis ; Dermatomyositis - immunology ; Female ; genome-wide association study ; HLA-DP beta-Chains - genetics ; HLA-DPB1 ; Humans ; Male ; Middle Aged ; Polymorphism, Single Nucleotide ; variation</subject><ispartof>Journal of dermatology, 2016-11, Vol.43 (11), p.1307-1313</ispartof><rights>2016 Japanese Dermatological Association</rights><rights>2016 Japanese Dermatological Association.</rights><rights>Copyright © 2016 Japanese Dermatological Association</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2F1346-8138.13397$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2F1346-8138.13397$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27153935$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Chang-E</creatorcontrib><creatorcontrib>Li, Yang</creatorcontrib><creatorcontrib>Wang, Zai-Xing</creatorcontrib><creatorcontrib>Gao, Jin-Ping</creatorcontrib><creatorcontrib>Zhang, Xiao-Guang</creatorcontrib><creatorcontrib>Zuo, Xian-Bo</creatorcontrib><creatorcontrib>Sheng, Yu-Jun</creatorcontrib><creatorcontrib>Chen, Gang</creatorcontrib><creatorcontrib>Sun, Liang-Dan</creatorcontrib><creatorcontrib>Zhang, Xue-Jun</creatorcontrib><creatorcontrib>Xu, Jin-Hua</creatorcontrib><creatorcontrib>Yang, Sen</creatorcontrib><title>Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population</title><title>Journal of dermatology</title><addtitle>J Dermatol</addtitle><description>Dermatomyositis (DM) is a polygenic disorder characterized by inflammation of skeletal muscle and skin. 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For the first time, HLA‐DPB1 was found to be associated with DM in this population. Moreover, we identified two novel suggestive susceptibility loci (PIP and CPN1) and confirmed four previously reported genes (DMB, DQA1, DQB1 and DRB1) having potential associations with DM in the Chinese Han population. Our GWAS results in this population should provide important information regarding the genetic etiopathogenesis of DM and facilitate the development of new therapies for the treatment of DM and the prevention of DM progression.</description><subject>Adult</subject><subject>Aged</subject><subject>Asian Continental Ancestry Group - genetics</subject><subject>Case-Control Studies</subject><subject>China</subject><subject>Chinese Han population</subject><subject>dermatomyositis</subject><subject>Dermatomyositis - immunology</subject><subject>Female</subject><subject>genome-wide association study</subject><subject>HLA-DP beta-Chains - genetics</subject><subject>HLA-DPB1</subject><subject>Humans</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Polymorphism, Single Nucleotide</subject><subject>variation</subject><issn>0385-2407</issn><issn>1346-8138</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkTtv2zAUhYmgReI4mbMFArJ0UXovr0VSo-M83MJIG7R5bARlUTAdPVxRgut_X8l2PXQqFxI83zm45GHsAuEau_UZaSRChaSukSiWR2xwuPnABkAqCvkI5Ak79X4JwOMI4ZidcIkRxRQN2OOLqZ1pXFUGpgmms3F4-_0GA-cD43017ySbBmvXLILU1oVpqmJTedd0uiuDycKV1ttgVa3afBtyxj5mJvf2fL8P2fP93c_JNJx9e_gyGc9CRwpkyDmiyrK5SAEQEgUKMi5IGYEjYQlBJTZJOJAVJsVUklJZDGaEsQGB3eRD9mmXu6qrX631jS6cn9s8N6WtWq9RkSRUStB_oFwIRUL1qVf_oMuqrcvuIX0gjyRy6KnLPdUmhU31qnaFqTf676d2QLQD1i63m4OOoPvOdN-Q7hvS287019u77aHzhTuf8439ffCZ-l0LSTLSr48POhIQT9-efmigP6Llk6k</recordid><startdate>201611</startdate><enddate>201611</enddate><creator>Zhang, Chang-E</creator><creator>Li, Yang</creator><creator>Wang, Zai-Xing</creator><creator>Gao, Jin-Ping</creator><creator>Zhang, Xiao-Guang</creator><creator>Zuo, Xian-Bo</creator><creator>Sheng, Yu-Jun</creator><creator>Chen, Gang</creator><creator>Sun, Liang-Dan</creator><creator>Zhang, Xue-Jun</creator><creator>Xu, Jin-Hua</creator><creator>Yang, Sen</creator><general>Blackwell Publishing Ltd</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7T5</scope><scope>H94</scope><scope>K9.</scope><scope>7X8</scope></search><sort><creationdate>201611</creationdate><title>Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population</title><author>Zhang, Chang-E ; Li, Yang ; Wang, Zai-Xing ; Gao, Jin-Ping ; Zhang, Xiao-Guang ; Zuo, Xian-Bo ; Sheng, Yu-Jun ; Chen, Gang ; Sun, Liang-Dan ; Zhang, Xue-Jun ; Xu, Jin-Hua ; Yang, Sen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-i3807-22118ffc6d0010b8080f2638a6146e3108bebb203e6ad1d7388f90a419a061393</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Asian Continental Ancestry Group - genetics</topic><topic>Case-Control Studies</topic><topic>China</topic><topic>Chinese Han population</topic><topic>dermatomyositis</topic><topic>Dermatomyositis - immunology</topic><topic>Female</topic><topic>genome-wide association study</topic><topic>HLA-DP beta-Chains - genetics</topic><topic>HLA-DPB1</topic><topic>Humans</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Polymorphism, Single Nucleotide</topic><topic>variation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Chang-E</creatorcontrib><creatorcontrib>Li, Yang</creatorcontrib><creatorcontrib>Wang, Zai-Xing</creatorcontrib><creatorcontrib>Gao, Jin-Ping</creatorcontrib><creatorcontrib>Zhang, Xiao-Guang</creatorcontrib><creatorcontrib>Zuo, Xian-Bo</creatorcontrib><creatorcontrib>Sheng, Yu-Jun</creatorcontrib><creatorcontrib>Chen, Gang</creatorcontrib><creatorcontrib>Sun, Liang-Dan</creatorcontrib><creatorcontrib>Zhang, Xue-Jun</creatorcontrib><creatorcontrib>Xu, Jin-Hua</creatorcontrib><creatorcontrib>Yang, Sen</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Immunology Abstracts</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of dermatology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Chang-E</au><au>Li, Yang</au><au>Wang, Zai-Xing</au><au>Gao, Jin-Ping</au><au>Zhang, Xiao-Guang</au><au>Zuo, Xian-Bo</au><au>Sheng, Yu-Jun</au><au>Chen, Gang</au><au>Sun, Liang-Dan</au><au>Zhang, Xue-Jun</au><au>Xu, Jin-Hua</au><au>Yang, Sen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population</atitle><jtitle>Journal of dermatology</jtitle><addtitle>J Dermatol</addtitle><date>2016-11</date><risdate>2016</risdate><volume>43</volume><issue>11</issue><spage>1307</spage><epage>1313</epage><pages>1307-1313</pages><issn>0385-2407</issn><eissn>1346-8138</eissn><abstract>Dermatomyositis (DM) is a polygenic disorder characterized by inflammation of skeletal muscle and skin. To date, the exact etiopathogenesis of DM remains elusive. To explore the genetic basis of DM, we conducted genome‐wide genotyping analysis of 127 patients and 1566 healthy controls by Illumina Human OmniZhongHua‐8 BeadChips in the Chinese Han population. We investigated whether the three SNP (rs7750458, rs9501251 and rs9500928) at 6p21.32 in the HLA‐DPB1 gene were significantly associated with DM (P &lt; 5 × 10−8) and identified two susceptibility loci at 7q34 (PIP, rs9986765, P = 7.45 × 10−7, odds ratio [OR] = 2.71) and 10q24.2 (CPN1, rs3750716, P = 9.04 × 10−7, OR = 4.39) with suggestive evidence. We imputed 6674 classical human leukocyte antigen (HLA) alleles, amino acids and SNP from the discovery dataset, and stepwise analysis revealed that HLA‐DPB1*17 in class II HLA genes were significantly associated with DM susceptibility. This study represents the first genome‐wide association study (GWAS) of DM in the Chinese Han population. For the first time, HLA‐DPB1 was found to be associated with DM in this population. Moreover, we identified two novel suggestive susceptibility loci (PIP and CPN1) and confirmed four previously reported genes (DMB, DQA1, DQB1 and DRB1) having potential associations with DM in the Chinese Han population. Our GWAS results in this population should provide important information regarding the genetic etiopathogenesis of DM and facilitate the development of new therapies for the treatment of DM and the prevention of DM progression.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>27153935</pmid><doi>10.1111/1346-8138.13397</doi><tpages>7</tpages></addata></record>
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source MEDLINE; Wiley Online Library Journals Frontfile Complete
subjects Adult
Aged
Asian Continental Ancestry Group - genetics
Case-Control Studies
China
Chinese Han population
dermatomyositis
Dermatomyositis - immunology
Female
genome-wide association study
HLA-DP beta-Chains - genetics
HLA-DPB1
Humans
Male
Middle Aged
Polymorphism, Single Nucleotide
variation
title Variation at HLA-DPB1 is associated with dermatomyositis in Chinese population
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