Next-generation sequencing of 34 genes in sudden unexplained death victims in forensics and in patients with channelopathic cardiac diseases
Sudden cardiac death (SCD) is responsible for a large proportion of sudden deaths in young individuals. In forensic medicine, many cases remain unexplained after routine postmortem autopsy and conventional investigations. These cases are called sudden unexplained deaths (SUD). Genetic testing has be...
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Veröffentlicht in: | International journal of legal medicine 2015-07, Vol.129 (4), p.793-800 |
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creator | Hertz, C. L. Christiansen, S. L. Ferrero-Miliani, L. Fordyce, S. L. Dahl, M. Holst, A. G. Ottesen, G. L. Frank-Hansen, R. Bundgaard, H. Morling, N. |
description | Sudden cardiac death (SCD) is responsible for a large proportion of sudden deaths in young individuals. In forensic medicine, many cases remain unexplained after routine postmortem autopsy and conventional investigations. These cases are called sudden unexplained deaths (SUD). Genetic testing has been suggested useful in forensic medicine, although in general with a significantly lower success rate compared to the clinical setting. The purpose of the study was to estimate the frequency of pathogenic variants in the genes most frequently associated with SCD in SUD cases and compare the frequency to that in patients with inherited cardiac channelopathies. Fifteen forensic SUD cases and 29 patients with channelopathies were investigated. DNA from 34 of the genes most frequently associated with SCD were captured using NimbleGen SeqCap EZ library build and were sequenced with next-generation sequencing (NGS) on an Illumina MiSeq. Likely pathogenic variants were identified in three out of 15 (20 %) forensic SUD cases compared to 12 out of 29 (41 %) patients with channelopathies. The difference was not statistically significant (
p
= 0.1). Additionally, two larger deletions of entire exons were identified in two of the patients (7 %). The frequency of likely pathogenic variants was >2-fold higher in the clinical setting as compared to SUD cases. However, the demonstration of likely pathogenic variants in three out of 15 forensic SUD cases indicates that NGS investigations will contribute to the clinical investigations. Hence, this has the potential to increase the diagnostic rate significantly in the forensic as well as in the clinical setting. |
doi_str_mv | 10.1007/s00414-014-1105-y |
format | Article |
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p
= 0.1). Additionally, two larger deletions of entire exons were identified in two of the patients (7 %). The frequency of likely pathogenic variants was >2-fold higher in the clinical setting as compared to SUD cases. However, the demonstration of likely pathogenic variants in three out of 15 forensic SUD cases indicates that NGS investigations will contribute to the clinical investigations. Hence, this has the potential to increase the diagnostic rate significantly in the forensic as well as in the clinical setting.</description><identifier>ISSN: 0937-9827</identifier><identifier>EISSN: 1437-1596</identifier><identifier>DOI: 10.1007/s00414-014-1105-y</identifier><identifier>PMID: 25467552</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Adolescent ; Adult ; Autopsies ; Channelopathies - genetics ; Child ; Child, Preschool ; Death, Sudden, Cardiac - etiology ; Family medical history ; Female ; Forensic Genetics ; Forensic Medicine ; Forensic pathology ; Forensic sciences ; Genetic testing ; High-Throughput Nucleotide Sequencing ; Hospitals ; Humans ; INDEL Mutation ; Infant ; Male ; Medical Law ; Medicine ; Medicine & Public Health ; Middle Aged ; Original Article ; Polymorphism, Single Nucleotide ; Sequence Analysis, DNA ; Young Adult</subject><ispartof>International journal of legal medicine, 2015-07, Vol.129 (4), p.793-800</ispartof><rights>Springer-Verlag Berlin Heidelberg 2014</rights><rights>Springer-Verlag Berlin Heidelberg 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c475t-4092e88a4200ef28dd39a1c8a28cac071f53fce0563defa1c9d63ffe77c26a773</citedby><cites>FETCH-LOGICAL-c475t-4092e88a4200ef28dd39a1c8a28cac071f53fce0563defa1c9d63ffe77c26a773</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00414-014-1105-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00414-014-1105-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25467552$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hertz, C. L.</creatorcontrib><creatorcontrib>Christiansen, S. L.</creatorcontrib><creatorcontrib>Ferrero-Miliani, L.</creatorcontrib><creatorcontrib>Fordyce, S. L.</creatorcontrib><creatorcontrib>Dahl, M.</creatorcontrib><creatorcontrib>Holst, A. G.</creatorcontrib><creatorcontrib>Ottesen, G. L.</creatorcontrib><creatorcontrib>Frank-Hansen, R.</creatorcontrib><creatorcontrib>Bundgaard, H.</creatorcontrib><creatorcontrib>Morling, N.</creatorcontrib><title>Next-generation sequencing of 34 genes in sudden unexplained death victims in forensics and in patients with channelopathic cardiac diseases</title><title>International journal of legal medicine</title><addtitle>Int J Legal Med</addtitle><addtitle>Int J Legal Med</addtitle><description>Sudden cardiac death (SCD) is responsible for a large proportion of sudden deaths in young individuals. In forensic medicine, many cases remain unexplained after routine postmortem autopsy and conventional investigations. These cases are called sudden unexplained deaths (SUD). Genetic testing has been suggested useful in forensic medicine, although in general with a significantly lower success rate compared to the clinical setting. The purpose of the study was to estimate the frequency of pathogenic variants in the genes most frequently associated with SCD in SUD cases and compare the frequency to that in patients with inherited cardiac channelopathies. Fifteen forensic SUD cases and 29 patients with channelopathies were investigated. DNA from 34 of the genes most frequently associated with SCD were captured using NimbleGen SeqCap EZ library build and were sequenced with next-generation sequencing (NGS) on an Illumina MiSeq. Likely pathogenic variants were identified in three out of 15 (20 %) forensic SUD cases compared to 12 out of 29 (41 %) patients with channelopathies. The difference was not statistically significant (
p
= 0.1). Additionally, two larger deletions of entire exons were identified in two of the patients (7 %). The frequency of likely pathogenic variants was >2-fold higher in the clinical setting as compared to SUD cases. However, the demonstration of likely pathogenic variants in three out of 15 forensic SUD cases indicates that NGS investigations will contribute to the clinical investigations. Hence, this has the potential to increase the diagnostic rate significantly in the forensic as well as in the clinical setting.</description><subject>Adolescent</subject><subject>Adult</subject><subject>Autopsies</subject><subject>Channelopathies - genetics</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>Death, Sudden, Cardiac - etiology</subject><subject>Family medical history</subject><subject>Female</subject><subject>Forensic Genetics</subject><subject>Forensic Medicine</subject><subject>Forensic pathology</subject><subject>Forensic sciences</subject><subject>Genetic testing</subject><subject>High-Throughput Nucleotide Sequencing</subject><subject>Hospitals</subject><subject>Humans</subject><subject>INDEL Mutation</subject><subject>Infant</subject><subject>Male</subject><subject>Medical Law</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Middle Aged</subject><subject>Original Article</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Sequence Analysis, DNA</subject><subject>Young Adult</subject><issn>0937-9827</issn><issn>1437-1596</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFkcGKFDEQhoMo7uzqA3iRgBcvrZV0p5McZVFXWPSi5yYmlZksPekx1a077-BDm3ZWEUE8hBT1f_WHys_YEwEvBIB-SQCd6BqoRwhQzfEe24iu1Y1Qtr_PNmBrbY3UZ-yc6AZA6F6rh-xMqq4WSm7Y9_d4OzdbzFjcnKbMCb8smH3KWz5F3nZ81YinqiwhYOZLxtvD6FLGwAO6ece_Jj-n_U8mTgUzJU_c5bA2DtUV80z8W6qk37mccZxqd5c8966E5DwPidAR0iP2ILqR8PHdfcE-vXn98fKquf7w9t3lq-vGd1rNTQdWojGukwAYpQmhtU5446TxzoMWUbXRI6i-DRirYkPfxohae9k7rdsL9vzkeyhT3ZbmYZ_I4zi6jNNCg6hfZiUYK_6P9hakUMbIij77C72ZlpLrIpUy1mol-pUSJ8qXiahgHA4l7V05DgKGNdXhlOpQUx3WVIdjnXl657x83mP4PfErxgrIE0BVylssfzz9T9cfLfmvSg</recordid><startdate>20150701</startdate><enddate>20150701</enddate><creator>Hertz, C. 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L. ; Christiansen, S. L. ; Ferrero-Miliani, L. ; Fordyce, S. L. ; Dahl, M. ; Holst, A. G. ; Ottesen, G. 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L.</au><au>Christiansen, S. L.</au><au>Ferrero-Miliani, L.</au><au>Fordyce, S. L.</au><au>Dahl, M.</au><au>Holst, A. G.</au><au>Ottesen, G. L.</au><au>Frank-Hansen, R.</au><au>Bundgaard, H.</au><au>Morling, N.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Next-generation sequencing of 34 genes in sudden unexplained death victims in forensics and in patients with channelopathic cardiac diseases</atitle><jtitle>International journal of legal medicine</jtitle><stitle>Int J Legal Med</stitle><addtitle>Int J Legal Med</addtitle><date>2015-07-01</date><risdate>2015</risdate><volume>129</volume><issue>4</issue><spage>793</spage><epage>800</epage><pages>793-800</pages><issn>0937-9827</issn><eissn>1437-1596</eissn><abstract>Sudden cardiac death (SCD) is responsible for a large proportion of sudden deaths in young individuals. In forensic medicine, many cases remain unexplained after routine postmortem autopsy and conventional investigations. These cases are called sudden unexplained deaths (SUD). Genetic testing has been suggested useful in forensic medicine, although in general with a significantly lower success rate compared to the clinical setting. The purpose of the study was to estimate the frequency of pathogenic variants in the genes most frequently associated with SCD in SUD cases and compare the frequency to that in patients with inherited cardiac channelopathies. Fifteen forensic SUD cases and 29 patients with channelopathies were investigated. DNA from 34 of the genes most frequently associated with SCD were captured using NimbleGen SeqCap EZ library build and were sequenced with next-generation sequencing (NGS) on an Illumina MiSeq. Likely pathogenic variants were identified in three out of 15 (20 %) forensic SUD cases compared to 12 out of 29 (41 %) patients with channelopathies. The difference was not statistically significant (
p
= 0.1). Additionally, two larger deletions of entire exons were identified in two of the patients (7 %). The frequency of likely pathogenic variants was >2-fold higher in the clinical setting as compared to SUD cases. However, the demonstration of likely pathogenic variants in three out of 15 forensic SUD cases indicates that NGS investigations will contribute to the clinical investigations. Hence, this has the potential to increase the diagnostic rate significantly in the forensic as well as in the clinical setting.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>25467552</pmid><doi>10.1007/s00414-014-1105-y</doi><tpages>8</tpages></addata></record> |
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subjects | Adolescent Adult Autopsies Channelopathies - genetics Child Child, Preschool Death, Sudden, Cardiac - etiology Family medical history Female Forensic Genetics Forensic Medicine Forensic pathology Forensic sciences Genetic testing High-Throughput Nucleotide Sequencing Hospitals Humans INDEL Mutation Infant Male Medical Law Medicine Medicine & Public Health Middle Aged Original Article Polymorphism, Single Nucleotide Sequence Analysis, DNA Young Adult |
title | Next-generation sequencing of 34 genes in sudden unexplained death victims in forensics and in patients with channelopathic cardiac diseases |
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