Y-STR INRA189 polymorphisms in Chinese yak breeds
To further explore Y-STR INRA189 polymorphisms in the yak, and to determine the genetic differences among yak breeds, genotyping analysis of INRA189 in 102 male yak individuals from three yak breeds in Qinghai Province of China was performed. Genotyping revealed the presence of four alleles, with si...
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| Veröffentlicht in: | Genetics and molecular research 2015-01, Vol.14 (4), p.18859-18862 |
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| creator | Ma, Z J Chen, S M Sun, Y G Xi, Y L Li, R Z Xu, J T Lei, C Z |
| description | To further explore Y-STR INRA189 polymorphisms in the yak, and to determine the genetic differences among yak breeds, genotyping analysis of INRA189 in 102 male yak individuals from three yak breeds in Qinghai Province of China was performed. Genotyping revealed the presence of four alleles, with sizes of 149, 155, 157, and 159 bp, respectively. Of these, the 157-bp allele, which was found with the highest frequency in the three yak breeds, was the dominant allele. Interestingly, the 149-bp allele was only detected in the Gaoyuan breed, and the 159-bp allele was only found in the Huanhu and Datong breeds. Only the 157- and 155-bp alleles were found in all three yak breeds. Taking the three yak breeds as a single population, the frequency of these four alleles was 0.0294, 0.0686, 0.8628, and 0.0392, respectively. The average polymorphism information content in the three yak breeds was 0.2379, indicating that the INRA189 was a low polymorphic Y-STR marker in yak. |
| doi_str_mv | 10.4238/2015.December.28.35 |
| format | Article |
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Genotyping revealed the presence of four alleles, with sizes of 149, 155, 157, and 159 bp, respectively. Of these, the 157-bp allele, which was found with the highest frequency in the three yak breeds, was the dominant allele. Interestingly, the 149-bp allele was only detected in the Gaoyuan breed, and the 159-bp allele was only found in the Huanhu and Datong breeds. Only the 157- and 155-bp alleles were found in all three yak breeds. Taking the three yak breeds as a single population, the frequency of these four alleles was 0.0294, 0.0686, 0.8628, and 0.0392, respectively. The average polymorphism information content in the three yak breeds was 0.2379, indicating that the INRA189 was a low polymorphic Y-STR marker in yak.</description><identifier>ISSN: 1676-5680</identifier><identifier>EISSN: 1676-5680</identifier><identifier>DOI: 10.4238/2015.December.28.35</identifier><identifier>PMID: 26782536</identifier><language>eng</language><publisher>Brazil</publisher><subject>Alleles ; Animals ; Breeding ; Cattle - classification ; Cattle - genetics ; Chromosomes, Mammalian - chemistry ; Female ; Gene Frequency ; Genetic Loci ; Genetic Markers ; Genome ; Genotype ; Genotyping Techniques ; Male ; Phylogeny ; Polymorphism, Genetic ; Y Chromosome - chemistry</subject><ispartof>Genetics and molecular research, 2015-01, Vol.14 (4), p.18859-18862</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c383t-6ab4906d93555e931640f7dc2b11884ef1236de47e627acf65e7f2f6662c3f3c3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26782536$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ma, Z J</creatorcontrib><creatorcontrib>Chen, S M</creatorcontrib><creatorcontrib>Sun, Y G</creatorcontrib><creatorcontrib>Xi, Y L</creatorcontrib><creatorcontrib>Li, R Z</creatorcontrib><creatorcontrib>Xu, J T</creatorcontrib><creatorcontrib>Lei, C Z</creatorcontrib><title>Y-STR INRA189 polymorphisms in Chinese yak breeds</title><title>Genetics and molecular research</title><addtitle>Genet Mol Res</addtitle><description>To further explore Y-STR INRA189 polymorphisms in the yak, and to determine the genetic differences among yak breeds, genotyping analysis of INRA189 in 102 male yak individuals from three yak breeds in Qinghai Province of China was performed. Genotyping revealed the presence of four alleles, with sizes of 149, 155, 157, and 159 bp, respectively. Of these, the 157-bp allele, which was found with the highest frequency in the three yak breeds, was the dominant allele. Interestingly, the 149-bp allele was only detected in the Gaoyuan breed, and the 159-bp allele was only found in the Huanhu and Datong breeds. Only the 157- and 155-bp alleles were found in all three yak breeds. Taking the three yak breeds as a single population, the frequency of these four alleles was 0.0294, 0.0686, 0.8628, and 0.0392, respectively. The average polymorphism information content in the three yak breeds was 0.2379, indicating that the INRA189 was a low polymorphic Y-STR marker in yak.</description><subject>Alleles</subject><subject>Animals</subject><subject>Breeding</subject><subject>Cattle - classification</subject><subject>Cattle - genetics</subject><subject>Chromosomes, Mammalian - chemistry</subject><subject>Female</subject><subject>Gene Frequency</subject><subject>Genetic Loci</subject><subject>Genetic Markers</subject><subject>Genome</subject><subject>Genotype</subject><subject>Genotyping Techniques</subject><subject>Male</subject><subject>Phylogeny</subject><subject>Polymorphism, Genetic</subject><subject>Y Chromosome - chemistry</subject><issn>1676-5680</issn><issn>1676-5680</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkDtPwzAUhS0EoqXwC5BQRpYEP6-dsSqvSgikUgYmK3Gu1UDSBLsd-u-haovYmO4ZvnOu9BFyyWgmuTA3nDKV3aLDtsSQcZMJdUSGDDSkCgw9_pMH5CzGD0q5koaekgEHbbgSMCTsPX2dz5Lp82zMTJ70XbNpu9Av6tjGpF4mk0W9xIjJpvhMyoBYxXNy4osm4sX-jsjb_d188pg-vTxMJ-On1AkjVikUpcwpVLlQSmEuGEjqdeV4yZgxEj3jAiqUGoHrwnlQqD33AMCd8MKJEbne7fah-1pjXNm2jg6bplhit46WGa5zxjRl_6MaqMm1kVtU7FAXuhgDetuHui3CxjJqt1rtVqs9aLXcWKF-Wlf7B-uyxeq3c_AovgHIfXIG</recordid><startdate>20150101</startdate><enddate>20150101</enddate><creator>Ma, Z J</creator><creator>Chen, S M</creator><creator>Sun, Y G</creator><creator>Xi, Y L</creator><creator>Li, R Z</creator><creator>Xu, J T</creator><creator>Lei, C Z</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20150101</creationdate><title>Y-STR INRA189 polymorphisms in Chinese yak breeds</title><author>Ma, Z J ; Chen, S M ; Sun, Y G ; Xi, Y L ; Li, R Z ; Xu, J T ; Lei, C Z</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c383t-6ab4906d93555e931640f7dc2b11884ef1236de47e627acf65e7f2f6662c3f3c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Alleles</topic><topic>Animals</topic><topic>Breeding</topic><topic>Cattle - classification</topic><topic>Cattle - genetics</topic><topic>Chromosomes, Mammalian - chemistry</topic><topic>Female</topic><topic>Gene Frequency</topic><topic>Genetic Loci</topic><topic>Genetic Markers</topic><topic>Genome</topic><topic>Genotype</topic><topic>Genotyping Techniques</topic><topic>Male</topic><topic>Phylogeny</topic><topic>Polymorphism, Genetic</topic><topic>Y Chromosome - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ma, Z J</creatorcontrib><creatorcontrib>Chen, S M</creatorcontrib><creatorcontrib>Sun, Y G</creatorcontrib><creatorcontrib>Xi, Y L</creatorcontrib><creatorcontrib>Li, R Z</creatorcontrib><creatorcontrib>Xu, J T</creatorcontrib><creatorcontrib>Lei, C Z</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Genetics and molecular research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ma, Z J</au><au>Chen, S M</au><au>Sun, Y G</au><au>Xi, Y L</au><au>Li, R Z</au><au>Xu, J T</au><au>Lei, C Z</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Y-STR INRA189 polymorphisms in Chinese yak breeds</atitle><jtitle>Genetics and molecular research</jtitle><addtitle>Genet Mol Res</addtitle><date>2015-01-01</date><risdate>2015</risdate><volume>14</volume><issue>4</issue><spage>18859</spage><epage>18862</epage><pages>18859-18862</pages><issn>1676-5680</issn><eissn>1676-5680</eissn><abstract>To further explore Y-STR INRA189 polymorphisms in the yak, and to determine the genetic differences among yak breeds, genotyping analysis of INRA189 in 102 male yak individuals from three yak breeds in Qinghai Province of China was performed. Genotyping revealed the presence of four alleles, with sizes of 149, 155, 157, and 159 bp, respectively. Of these, the 157-bp allele, which was found with the highest frequency in the three yak breeds, was the dominant allele. Interestingly, the 149-bp allele was only detected in the Gaoyuan breed, and the 159-bp allele was only found in the Huanhu and Datong breeds. Only the 157- and 155-bp alleles were found in all three yak breeds. Taking the three yak breeds as a single population, the frequency of these four alleles was 0.0294, 0.0686, 0.8628, and 0.0392, respectively. The average polymorphism information content in the three yak breeds was 0.2379, indicating that the INRA189 was a low polymorphic Y-STR marker in yak.</abstract><cop>Brazil</cop><pmid>26782536</pmid><doi>10.4238/2015.December.28.35</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals |
| subjects | Alleles Animals Breeding Cattle - classification Cattle - genetics Chromosomes, Mammalian - chemistry Female Gene Frequency Genetic Loci Genetic Markers Genome Genotype Genotyping Techniques Male Phylogeny Polymorphism, Genetic Y Chromosome - chemistry |
| title | Y-STR INRA189 polymorphisms in Chinese yak breeds |
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