Whole genome SNP scanning of snow sheep (Ovis nivicola)
This is the first report performing the whole genome SNP scanning of snow sheep ( Ovis nivicola ). Samples of snow sheep ( n = 18) collected in six different regions of the Republic of Sakha (Yakutia) from 64° to 71° N. For SNP genotyping, we applied Ovine 50K SNP BeadChip (Illumina, United States),...
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| Veröffentlicht in: | Doklady. Biochemistry and biophysics 2016-07, Vol.469 (1), p.288-293 |
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| container_title | Doklady. Biochemistry and biophysics |
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| creator | Deniskova, T. E. Okhlopkov, I. M. Sermyagin, A. A. Gladyr’, E. A. Bagirov, V. A. Sölkner, J. Mamaev, N. V. Brem, G. Zinov’eva, N. A. |
| description | This is the first report performing the whole genome SNP scanning of snow sheep (
Ovis nivicola
). Samples of snow sheep (
n
= 18) collected in six different regions of the Republic of Sakha (Yakutia) from 64° to 71° N. For SNP genotyping, we applied Ovine 50K SNP BeadChip (Illumina, United States), designed for domestic sheep. The total number of genotyped SNPs (call rate 90%) was 47796 (88.1% of total SNPs), wherein 1006 SNPs were polymorphic (2.1%). Principal component analysis (PCA) showed the clear differentiation within the species
O. nivicola
: studied individuals were distributed among five distinct arrays corresponding to the geographical locations of sampling points. Our results demonstrate that the DNA chip designed for domestic sheep can be successfully used to study the allele pool and the genetic structure of snow sheep populations. |
| doi_str_mv | 10.1134/S1607672916040141 |
| format | Article |
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Ovis nivicola
). Samples of snow sheep (
n
= 18) collected in six different regions of the Republic of Sakha (Yakutia) from 64° to 71° N. For SNP genotyping, we applied Ovine 50K SNP BeadChip (Illumina, United States), designed for domestic sheep. The total number of genotyped SNPs (call rate 90%) was 47796 (88.1% of total SNPs), wherein 1006 SNPs were polymorphic (2.1%). Principal component analysis (PCA) showed the clear differentiation within the species
O. nivicola
: studied individuals were distributed among five distinct arrays corresponding to the geographical locations of sampling points. Our results demonstrate that the DNA chip designed for domestic sheep can be successfully used to study the allele pool and the genetic structure of snow sheep populations.</description><identifier>ISSN: 1607-6729</identifier><identifier>EISSN: 1608-3091</identifier><identifier>DOI: 10.1134/S1607672916040141</identifier><identifier>PMID: 27599514</identifier><language>eng</language><publisher>Moscow: Pleiades Publishing</publisher><subject>Animals ; Biochemistry ; Biological and Medical Physics ; Biomedical and Life Sciences ; Biophysics ; Genomes ; Genotype & phenotype ; Life Sciences ; Molecular Biology ; Oligonucleotide Array Sequence Analysis - methods ; Ovis nivicola ; Phylogeography ; Polymorphism ; Polymorphism, Single Nucleotide ; Russia ; Sheep ; Sheep - genetics ; Species Specificity</subject><ispartof>Doklady. Biochemistry and biophysics, 2016-07, Vol.469 (1), p.288-293</ispartof><rights>Pleiades Publishing, Ltd. 2016</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c453t-9a23bfac2c2328084e96e44704fdf23e029c1aeb39a7b3506dac596bd9e4b21c3</citedby><cites>FETCH-LOGICAL-c453t-9a23bfac2c2328084e96e44704fdf23e029c1aeb39a7b3506dac596bd9e4b21c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1134/S1607672916040141$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1134/S1607672916040141$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27599514$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Deniskova, T. E.</creatorcontrib><creatorcontrib>Okhlopkov, I. M.</creatorcontrib><creatorcontrib>Sermyagin, A. A.</creatorcontrib><creatorcontrib>Gladyr’, E. A.</creatorcontrib><creatorcontrib>Bagirov, V. A.</creatorcontrib><creatorcontrib>Sölkner, J.</creatorcontrib><creatorcontrib>Mamaev, N. V.</creatorcontrib><creatorcontrib>Brem, G.</creatorcontrib><creatorcontrib>Zinov’eva, N. A.</creatorcontrib><title>Whole genome SNP scanning of snow sheep (Ovis nivicola)</title><title>Doklady. Biochemistry and biophysics</title><addtitle>Dokl Biochem Biophys</addtitle><addtitle>Dokl Biochem Biophys</addtitle><description>This is the first report performing the whole genome SNP scanning of snow sheep (
Ovis nivicola
). Samples of snow sheep (
n
= 18) collected in six different regions of the Republic of Sakha (Yakutia) from 64° to 71° N. For SNP genotyping, we applied Ovine 50K SNP BeadChip (Illumina, United States), designed for domestic sheep. The total number of genotyped SNPs (call rate 90%) was 47796 (88.1% of total SNPs), wherein 1006 SNPs were polymorphic (2.1%). Principal component analysis (PCA) showed the clear differentiation within the species
O. nivicola
: studied individuals were distributed among five distinct arrays corresponding to the geographical locations of sampling points. Our results demonstrate that the DNA chip designed for domestic sheep can be successfully used to study the allele pool and the genetic structure of snow sheep populations.</description><subject>Animals</subject><subject>Biochemistry</subject><subject>Biological and Medical Physics</subject><subject>Biomedical and Life Sciences</subject><subject>Biophysics</subject><subject>Genomes</subject><subject>Genotype & phenotype</subject><subject>Life Sciences</subject><subject>Molecular Biology</subject><subject>Oligonucleotide Array Sequence Analysis - methods</subject><subject>Ovis nivicola</subject><subject>Phylogeography</subject><subject>Polymorphism</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Russia</subject><subject>Sheep</subject><subject>Sheep - genetics</subject><subject>Species Specificity</subject><issn>1607-6729</issn><issn>1608-3091</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkUtLw0AQgBdRbK3-AC-y4KUeovtKNnuU4guKFap4DJvNpE1Jd2vWVPz3bh-KKIKnGZhvvmFmEDqm5JxSLi7GNCEykUyFKAgVdAd1Q5pGnCi6u85ltKp30IH3M0IYYTzeRx0mY6ViKrpIPk9dDXgC1s0Bj-8fsDfa2spOsCuxt-4N-ynAAvdHy8pjWy0r42p9doj2Sl17ONrGHnq6vnoc3EbD0c3d4HIYGRHz10hpxvNSG2YYZylJBagEhJBElEXJOBCmDNWQc6VlzmOSFNrEKskLBSJn1PAe6m-8i8a9tOBfs3nlDdS1tuBan9GUSRW8iv4DpTIVnBIS0NMf6My1jQ2LrCkSjEkaKLqhTOO8b6DMFk011817Rkm2ekD26wGh52RrbvM5FF8dnxcPANsAPpTsBJpvo_-0fgDNsYwG</recordid><startdate>20160701</startdate><enddate>20160701</enddate><creator>Deniskova, T. E.</creator><creator>Okhlopkov, I. M.</creator><creator>Sermyagin, A. A.</creator><creator>Gladyr’, E. A.</creator><creator>Bagirov, V. A.</creator><creator>Sölkner, J.</creator><creator>Mamaev, N. V.</creator><creator>Brem, G.</creator><creator>Zinov’eva, N. 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E. ; Okhlopkov, I. M. ; Sermyagin, A. A. ; Gladyr’, E. A. ; Bagirov, V. A. ; Sölkner, J. ; Mamaev, N. V. ; Brem, G. ; Zinov’eva, N. 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Biochemistry and biophysics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Deniskova, T. E.</au><au>Okhlopkov, I. M.</au><au>Sermyagin, A. A.</au><au>Gladyr’, E. A.</au><au>Bagirov, V. A.</au><au>Sölkner, J.</au><au>Mamaev, N. V.</au><au>Brem, G.</au><au>Zinov’eva, N. A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Whole genome SNP scanning of snow sheep (Ovis nivicola)</atitle><jtitle>Doklady. Biochemistry and biophysics</jtitle><stitle>Dokl Biochem Biophys</stitle><addtitle>Dokl Biochem Biophys</addtitle><date>2016-07-01</date><risdate>2016</risdate><volume>469</volume><issue>1</issue><spage>288</spage><epage>293</epage><pages>288-293</pages><issn>1607-6729</issn><eissn>1608-3091</eissn><abstract>This is the first report performing the whole genome SNP scanning of snow sheep (
Ovis nivicola
). Samples of snow sheep (
n
= 18) collected in six different regions of the Republic of Sakha (Yakutia) from 64° to 71° N. For SNP genotyping, we applied Ovine 50K SNP BeadChip (Illumina, United States), designed for domestic sheep. The total number of genotyped SNPs (call rate 90%) was 47796 (88.1% of total SNPs), wherein 1006 SNPs were polymorphic (2.1%). Principal component analysis (PCA) showed the clear differentiation within the species
O. nivicola
: studied individuals were distributed among five distinct arrays corresponding to the geographical locations of sampling points. Our results demonstrate that the DNA chip designed for domestic sheep can be successfully used to study the allele pool and the genetic structure of snow sheep populations.</abstract><cop>Moscow</cop><pub>Pleiades Publishing</pub><pmid>27599514</pmid><doi>10.1134/S1607672916040141</doi><tpages>6</tpages></addata></record> |
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| ispartof | Doklady. Biochemistry and biophysics, 2016-07, Vol.469 (1), p.288-293 |
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| subjects | Animals Biochemistry Biological and Medical Physics Biomedical and Life Sciences Biophysics Genomes Genotype & phenotype Life Sciences Molecular Biology Oligonucleotide Array Sequence Analysis - methods Ovis nivicola Phylogeography Polymorphism Polymorphism, Single Nucleotide Russia Sheep Sheep - genetics Species Specificity |
| title | Whole genome SNP scanning of snow sheep (Ovis nivicola) |
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