Delimitating cryptic species in the Gracilaria domingensis complex (Gracilariaceae, Rhodophyta) using molecular and morphological data
Species in the genus Gracilaria that display conspicuously flattened vegetative morphologies are a taxonomically challenging group of marine benthic red algae. This is a result of their species richness, morphological similarity, and broad phenotypic plasticity. Within this group, the Gracilaria dom...
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Veröffentlicht in: | Journal of phycology 2016-12, Vol.52 (6), p.997-1017 |
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creator | Lyra, Goia de M. Gurgel, C. Frederico D. Costa, Emmanuelle da S. de Jesus, Priscila B. Oliveira, Mariana C. Oliveira, Eurico C. Davis, Charles C. Nunes, José Marcos de Castro |
description | Species in the genus Gracilaria that display conspicuously flattened vegetative morphologies are a taxonomically challenging group of marine benthic red algae. This is a result of their species richness, morphological similarity, and broad phenotypic plasticity. Within this group, the Gracilaria domingensis complex is one of the most common, conspicuous, and morphologically variable species along the tropical western Atlantic Ocean. Previous research has identified that members of this complex belong to two distantly related clades. However, despite this increased phylogentic resolution, species delimitations within each of these clades remain unclear. Our study assessed the species diversity within this difficult complex using morphological and molecular data from three genetic markers (cox1, UPA, and rbcL). We additionally applied six single‐marker species delimitation methods (SDM: ABGD, GMYCs, GMYCm, SPN, bPTP, and PTP) to rbcL, which were largely in agreement regarding species delimitation. These results, combined with our analysis of morphology, indicate that the G. domingensis complex includes seven distinct species, each of which are not all most closely related: G. cervicornis; a ressurected G. ferox; G. apiculata subsp. apiculata; a new species, Gracilaria baiana sp. nov.; G. intermedia subsp. intermedia; G. venezuelensis; and G. domingensis sensu stricto, which includes the later heterotypic synonym, G. yoneshigueana. Our study demonstrates the value of multipronged strategies, including the use of both molecular and morphological approaches, to decipher cryptic species of red algae. |
doi_str_mv | 10.1111/jpy.12456 |
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Frederico D. ; Costa, Emmanuelle da S. ; de Jesus, Priscila B. ; Oliveira, Mariana C. ; Oliveira, Eurico C. ; Davis, Charles C. ; Nunes, José Marcos de Castro</creator><contributor>Lane, C.</contributor><creatorcontrib>Lyra, Goia de M. ; Gurgel, C. Frederico D. ; Costa, Emmanuelle da S. ; de Jesus, Priscila B. ; Oliveira, Mariana C. ; Oliveira, Eurico C. ; Davis, Charles C. ; Nunes, José Marcos de Castro ; Lane, C.</creatorcontrib><description>Species in the genus Gracilaria that display conspicuously flattened vegetative morphologies are a taxonomically challenging group of marine benthic red algae. This is a result of their species richness, morphological similarity, and broad phenotypic plasticity. Within this group, the Gracilaria domingensis complex is one of the most common, conspicuous, and morphologically variable species along the tropical western Atlantic Ocean. Previous research has identified that members of this complex belong to two distantly related clades. However, despite this increased phylogentic resolution, species delimitations within each of these clades remain unclear. Our study assessed the species diversity within this difficult complex using morphological and molecular data from three genetic markers (cox1, UPA, and rbcL). We additionally applied six single‐marker species delimitation methods (SDM: ABGD, GMYCs, GMYCm, SPN, bPTP, and PTP) to rbcL, which were largely in agreement regarding species delimitation. These results, combined with our analysis of morphology, indicate that the G. domingensis complex includes seven distinct species, each of which are not all most closely related: G. cervicornis; a ressurected G. ferox; G. apiculata subsp. apiculata; a new species, Gracilaria baiana sp. nov.; G. intermedia subsp. intermedia; G. venezuelensis; and G. domingensis sensu stricto, which includes the later heterotypic synonym, G. yoneshigueana. Our study demonstrates the value of multipronged strategies, including the use of both molecular and morphological approaches, to decipher cryptic species of red algae.</description><identifier>ISSN: 0022-3646</identifier><identifier>EISSN: 1529-8817</identifier><identifier>DOI: 10.1111/jpy.12456</identifier><identifier>PMID: 27485203</identifier><language>eng</language><publisher>United States: Blackwell Publishing Ltd</publisher><subject>Algal Proteins - genetics ; Caribbean Region ; DNA, Algal - genetics ; Gracilaria ; Gracilaria - classification ; Gracilaria - cytology ; Gracilaria - genetics ; Gracilariales ; North America ; Phylogeny ; rbcL ; Rhodophyta ; RNA, Ribosomal, 23S - genetics ; Seaweed - classification ; Seaweed - cytology ; Seaweed - genetics ; Sequence Analysis, DNA ; South America ; Species Specificity ; systematics ; taxonomy</subject><ispartof>Journal of phycology, 2016-12, Vol.52 (6), p.997-1017</ispartof><rights>2016 Phycological Society of America</rights><rights>2016 Phycological Society of America.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4576-de952d9e46ef7bd8dac71538dce20f367b80e570c55914b9269b33995510be6c3</citedby><cites>FETCH-LOGICAL-c4576-de952d9e46ef7bd8dac71538dce20f367b80e570c55914b9269b33995510be6c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fjpy.12456$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fjpy.12456$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27485203$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Lane, C.</contributor><creatorcontrib>Lyra, Goia de M.</creatorcontrib><creatorcontrib>Gurgel, C. Frederico D.</creatorcontrib><creatorcontrib>Costa, Emmanuelle da S.</creatorcontrib><creatorcontrib>de Jesus, Priscila B.</creatorcontrib><creatorcontrib>Oliveira, Mariana C.</creatorcontrib><creatorcontrib>Oliveira, Eurico C.</creatorcontrib><creatorcontrib>Davis, Charles C.</creatorcontrib><creatorcontrib>Nunes, José Marcos de Castro</creatorcontrib><title>Delimitating cryptic species in the Gracilaria domingensis complex (Gracilariaceae, Rhodophyta) using molecular and morphological data</title><title>Journal of phycology</title><addtitle>J. Phycol</addtitle><description>Species in the genus Gracilaria that display conspicuously flattened vegetative morphologies are a taxonomically challenging group of marine benthic red algae. This is a result of their species richness, morphological similarity, and broad phenotypic plasticity. Within this group, the Gracilaria domingensis complex is one of the most common, conspicuous, and morphologically variable species along the tropical western Atlantic Ocean. Previous research has identified that members of this complex belong to two distantly related clades. However, despite this increased phylogentic resolution, species delimitations within each of these clades remain unclear. Our study assessed the species diversity within this difficult complex using morphological and molecular data from three genetic markers (cox1, UPA, and rbcL). We additionally applied six single‐marker species delimitation methods (SDM: ABGD, GMYCs, GMYCm, SPN, bPTP, and PTP) to rbcL, which were largely in agreement regarding species delimitation. These results, combined with our analysis of morphology, indicate that the G. domingensis complex includes seven distinct species, each of which are not all most closely related: G. cervicornis; a ressurected G. ferox; G. apiculata subsp. apiculata; a new species, Gracilaria baiana sp. nov.; G. intermedia subsp. intermedia; G. venezuelensis; and G. domingensis sensu stricto, which includes the later heterotypic synonym, G. yoneshigueana. Our study demonstrates the value of multipronged strategies, including the use of both molecular and morphological approaches, to decipher cryptic species of red algae.</description><subject>Algal Proteins - genetics</subject><subject>Caribbean Region</subject><subject>DNA, Algal - genetics</subject><subject>Gracilaria</subject><subject>Gracilaria - classification</subject><subject>Gracilaria - cytology</subject><subject>Gracilaria - genetics</subject><subject>Gracilariales</subject><subject>North America</subject><subject>Phylogeny</subject><subject>rbcL</subject><subject>Rhodophyta</subject><subject>RNA, Ribosomal, 23S - genetics</subject><subject>Seaweed - classification</subject><subject>Seaweed - cytology</subject><subject>Seaweed - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>South America</subject><subject>Species Specificity</subject><subject>systematics</subject><subject>taxonomy</subject><issn>0022-3646</issn><issn>1529-8817</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp10d9qFDEUBvAgil2rF76ABLxpwWmTTP7MXMrWrpaiUirFq5DJnO1mzUzGZIZ2XsDnNnXbCoK5CSG_83HgQ-g1JUc0n-PtMB9RxoV8ghZUsLqoKqqeogUhjBWl5HIPvUhpSwhRUtDnaI8pXglGygX6dQLedW40o-uvsY3zMDqL0wDWQcKux-MG8Coa67yJzuA2dBlCn1zCNnSDh1t88PffgoF3-GIT2jBs5tEc4indBXfBg50ywaZv8ysOm-DDtbPG49aM5iV6tjY-wav7ex99O_1wufxYnH9ZfVq-Py8sF0oWLdSCtTVwCWvVtFVrrKKirFoLjKxLqZqKgFDEClFT3tRM1k1Z1rUQlDQgbbmPDna5Qww_J0ij7lyy4L3pIUxJ04pJxWlJWaZv_6HbMMU-b5cVr6SqeM2zOtwpG0NKEdZ6iK4zcdaU6LtydC5H_ykn2zf3iVPTQfsoH9rI4HgHbpyH-f9J-uzr94fIYjfh0gi3jxMm_tBSlUroq88rTS_O6Mnl1VKT8jeajal3</recordid><startdate>201612</startdate><enddate>201612</enddate><creator>Lyra, Goia de M.</creator><creator>Gurgel, C. Frederico D.</creator><creator>Costa, Emmanuelle da S.</creator><creator>de Jesus, Priscila B.</creator><creator>Oliveira, Mariana C.</creator><creator>Oliveira, Eurico C.</creator><creator>Davis, Charles C.</creator><creator>Nunes, José Marcos de Castro</creator><general>Blackwell Publishing Ltd</general><general>Wiley Subscription Services, Inc</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TN</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>7X8</scope></search><sort><creationdate>201612</creationdate><title>Delimitating cryptic species in the Gracilaria domingensis complex (Gracilariaceae, Rhodophyta) using molecular and morphological data</title><author>Lyra, Goia de M. ; Gurgel, C. Frederico D. ; Costa, Emmanuelle da S. ; de Jesus, Priscila B. ; Oliveira, Mariana C. ; Oliveira, Eurico C. ; Davis, Charles C. ; Nunes, José Marcos de Castro</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4576-de952d9e46ef7bd8dac71538dce20f367b80e570c55914b9269b33995510be6c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Algal Proteins - genetics</topic><topic>Caribbean Region</topic><topic>DNA, Algal - genetics</topic><topic>Gracilaria</topic><topic>Gracilaria - classification</topic><topic>Gracilaria - cytology</topic><topic>Gracilaria - genetics</topic><topic>Gracilariales</topic><topic>North America</topic><topic>Phylogeny</topic><topic>rbcL</topic><topic>Rhodophyta</topic><topic>RNA, Ribosomal, 23S - genetics</topic><topic>Seaweed - classification</topic><topic>Seaweed - cytology</topic><topic>Seaweed - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>South America</topic><topic>Species Specificity</topic><topic>systematics</topic><topic>taxonomy</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lyra, Goia de M.</creatorcontrib><creatorcontrib>Gurgel, C. Frederico D.</creatorcontrib><creatorcontrib>Costa, Emmanuelle da S.</creatorcontrib><creatorcontrib>de Jesus, Priscila B.</creatorcontrib><creatorcontrib>Oliveira, Mariana C.</creatorcontrib><creatorcontrib>Oliveira, Eurico C.</creatorcontrib><creatorcontrib>Davis, Charles C.</creatorcontrib><creatorcontrib>Nunes, José Marcos de Castro</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Oceanic Abstracts</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>MEDLINE - Academic</collection><jtitle>Journal of phycology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lyra, Goia de M.</au><au>Gurgel, C. Frederico D.</au><au>Costa, Emmanuelle da S.</au><au>de Jesus, Priscila B.</au><au>Oliveira, Mariana C.</au><au>Oliveira, Eurico C.</au><au>Davis, Charles C.</au><au>Nunes, José Marcos de Castro</au><au>Lane, C.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Delimitating cryptic species in the Gracilaria domingensis complex (Gracilariaceae, Rhodophyta) using molecular and morphological data</atitle><jtitle>Journal of phycology</jtitle><addtitle>J. Phycol</addtitle><date>2016-12</date><risdate>2016</risdate><volume>52</volume><issue>6</issue><spage>997</spage><epage>1017</epage><pages>997-1017</pages><issn>0022-3646</issn><eissn>1529-8817</eissn><abstract>Species in the genus Gracilaria that display conspicuously flattened vegetative morphologies are a taxonomically challenging group of marine benthic red algae. This is a result of their species richness, morphological similarity, and broad phenotypic plasticity. Within this group, the Gracilaria domingensis complex is one of the most common, conspicuous, and morphologically variable species along the tropical western Atlantic Ocean. Previous research has identified that members of this complex belong to two distantly related clades. However, despite this increased phylogentic resolution, species delimitations within each of these clades remain unclear. Our study assessed the species diversity within this difficult complex using morphological and molecular data from three genetic markers (cox1, UPA, and rbcL). We additionally applied six single‐marker species delimitation methods (SDM: ABGD, GMYCs, GMYCm, SPN, bPTP, and PTP) to rbcL, which were largely in agreement regarding species delimitation. These results, combined with our analysis of morphology, indicate that the G. domingensis complex includes seven distinct species, each of which are not all most closely related: G. cervicornis; a ressurected G. ferox; G. apiculata subsp. apiculata; a new species, Gracilaria baiana sp. nov.; G. intermedia subsp. intermedia; G. venezuelensis; and G. domingensis sensu stricto, which includes the later heterotypic synonym, G. yoneshigueana. Our study demonstrates the value of multipronged strategies, including the use of both molecular and morphological approaches, to decipher cryptic species of red algae.</abstract><cop>United States</cop><pub>Blackwell Publishing Ltd</pub><pmid>27485203</pmid><doi>10.1111/jpy.12456</doi><tpages>21</tpages></addata></record> |
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subjects | Algal Proteins - genetics Caribbean Region DNA, Algal - genetics Gracilaria Gracilaria - classification Gracilaria - cytology Gracilaria - genetics Gracilariales North America Phylogeny rbcL Rhodophyta RNA, Ribosomal, 23S - genetics Seaweed - classification Seaweed - cytology Seaweed - genetics Sequence Analysis, DNA South America Species Specificity systematics taxonomy |
title | Delimitating cryptic species in the Gracilaria domingensis complex (Gracilariaceae, Rhodophyta) using molecular and morphological data |
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