Three Taxa in One: Cryptic Diversity in the Black Fly Simulium nobile (Diptera: Simuliidae) in Southeast Asia
We access the molecular diversity of the black fly Simulium nobile De Mejiere, using the universal cytochrome c oxidase subunit I (COI) barcoding gene, across its distributional range in Southeast Asia. Our phylogenetic analyses recovered three well-supported mitochondrial lineages of S. nobile, sug...
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| Veröffentlicht in: | Journal of medical entomology 2016-07, Vol.53 (4), p.972-976 |
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| creator | Low, Van Lun Takaoka, Hiroyuki Pramual, Pairot Adler, Peter H. Ya’cob, Zubaidah Chen, Chee Dhang Yotopranoto, Subagyo Zaid, Adnan Hadi, Upik Kesumawati Lardizabal, Maria Lourdes Nasruddin-Roshidi, Affan Sofian-Azirun, Mohd |
| description | We access the molecular diversity of the black fly Simulium nobile De Mejiere, using the universal cytochrome c oxidase subunit I (COI) barcoding gene, across its distributional range in Southeast Asia. Our phylogenetic analyses recovered three well-supported mitochondrial lineages of S. nobile, suggesting the presence of cryptic species. Lineage A is composed of a population from Sabah, East Malaysia (Borneo); lineage B represents the type population from Java, Indonesia; and lineage C includes populations from the mainland of Southeast Asia (Peninsular Malaysia and Thailand). The genetic variation of lineage C on the mainland is greater than that of lineages A and B on the islands of Borneo and Java. Our study highlights the value of a molecular approach in assessing species status of simuliids in geographically distinct regions. |
| doi_str_mv | 10.1093/jme/tjw058 |
| format | Article |
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Our phylogenetic analyses recovered three well-supported mitochondrial lineages of S. nobile, suggesting the presence of cryptic species. Lineage A is composed of a population from Sabah, East Malaysia (Borneo); lineage B represents the type population from Java, Indonesia; and lineage C includes populations from the mainland of Southeast Asia (Peninsular Malaysia and Thailand). The genetic variation of lineage C on the mainland is greater than that of lineages A and B on the islands of Borneo and Java. Our study highlights the value of a molecular approach in assessing species status of simuliids in geographically distinct regions.</description><identifier>ISSN: 0022-2585</identifier><identifier>EISSN: 1938-2928</identifier><identifier>DOI: 10.1093/jme/tjw058</identifier><identifier>PMID: 27208009</identifier><language>eng</language><publisher>England: Entomological Society of America</publisher><subject>Animal populations ; Animals ; COI gene ; Cryptic species ; Electron Transport Complex IV - genetics ; Female ; Genetic diversity ; Genetic Speciation ; Genetic Variation ; Indonesia ; Insect Proteins - genetics ; Insects ; Larva - classification ; Larva - growth & development ; Malaysia ; Male ; Phylogenetics ; Phylogeny ; Population genetics ; Pupa - classification ; Pupa - genetics ; Pupa - growth & development ; Sequence Analysis, DNA ; SHORT COMMUNICATION ; Simuliidae - classification ; Simuliidae - genetics ; Simuliidae - growth & development ; Simulium nobile species group ; Sympatry ; systematics ; Thailand</subject><ispartof>Journal of medical entomology, 2016-07, Vol.53 (4), p.972-976</ispartof><rights>The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com journals.permissions@oup.com</rights><rights>The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com 2016</rights><rights>The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.</rights><rights>Copyright Oxford University Press, UK Jul 2016</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-b378t-bdcbb8b4c2a61d8be21f627eb3b73eecff6154e601abcce086f7dd6a4b72a71a3</citedby><cites>FETCH-LOGICAL-b378t-bdcbb8b4c2a61d8be21f627eb3b73eecff6154e601abcce086f7dd6a4b72a71a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,1579,27905,27906</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27208009$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Low, Van Lun</creatorcontrib><creatorcontrib>Takaoka, Hiroyuki</creatorcontrib><creatorcontrib>Pramual, Pairot</creatorcontrib><creatorcontrib>Adler, Peter H.</creatorcontrib><creatorcontrib>Ya’cob, Zubaidah</creatorcontrib><creatorcontrib>Chen, Chee Dhang</creatorcontrib><creatorcontrib>Yotopranoto, Subagyo</creatorcontrib><creatorcontrib>Zaid, Adnan</creatorcontrib><creatorcontrib>Hadi, Upik Kesumawati</creatorcontrib><creatorcontrib>Lardizabal, Maria Lourdes</creatorcontrib><creatorcontrib>Nasruddin-Roshidi, Affan</creatorcontrib><creatorcontrib>Sofian-Azirun, Mohd</creatorcontrib><title>Three Taxa in One: Cryptic Diversity in the Black Fly Simulium nobile (Diptera: Simuliidae) in Southeast Asia</title><title>Journal of medical entomology</title><addtitle>J Med Entomol</addtitle><description>We access the molecular diversity of the black fly Simulium nobile De Mejiere, using the universal cytochrome c oxidase subunit I (COI) barcoding gene, across its distributional range in Southeast Asia. Our phylogenetic analyses recovered three well-supported mitochondrial lineages of S. nobile, suggesting the presence of cryptic species. Lineage A is composed of a population from Sabah, East Malaysia (Borneo); lineage B represents the type population from Java, Indonesia; and lineage C includes populations from the mainland of Southeast Asia (Peninsular Malaysia and Thailand). The genetic variation of lineage C on the mainland is greater than that of lineages A and B on the islands of Borneo and Java. Our study highlights the value of a molecular approach in assessing species status of simuliids in geographically distinct regions.</description><subject>Animal populations</subject><subject>Animals</subject><subject>COI gene</subject><subject>Cryptic species</subject><subject>Electron Transport Complex IV - genetics</subject><subject>Female</subject><subject>Genetic diversity</subject><subject>Genetic Speciation</subject><subject>Genetic Variation</subject><subject>Indonesia</subject><subject>Insect Proteins - genetics</subject><subject>Insects</subject><subject>Larva - classification</subject><subject>Larva - growth & development</subject><subject>Malaysia</subject><subject>Male</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Population genetics</subject><subject>Pupa - classification</subject><subject>Pupa - genetics</subject><subject>Pupa - growth & development</subject><subject>Sequence Analysis, DNA</subject><subject>SHORT COMMUNICATION</subject><subject>Simuliidae - classification</subject><subject>Simuliidae - genetics</subject><subject>Simuliidae - growth & development</subject><subject>Simulium nobile species group</subject><subject>Sympatry</subject><subject>systematics</subject><subject>Thailand</subject><issn>0022-2585</issn><issn>1938-2928</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp90T1PwzAQBmALgWgpLPwAZAkhAVLAdr4cNiifUqUOlDmynYvqksTBToD-e1y1MDB08nDPvTrfIXRMyRUlWXi9qOG6W3yRmO-gIc1CHrCM8V00JISxgMU8HqAD5xaEEE6jbB8NWMoIJyQbono2twB4Jr4F1g2eNnCDx3bZdlrhe_0J1uluuap0c8B3lVDv-LFa4ldd95Xua9wYqSvA5_e67cCKm01FFwIuVm2vpvedwnX41mlxiPZKUTk42rwj9Pb4MBs_B5Pp08v4dhLIMOVdIAslJZeRYiKhBZfAaJmwFGQo0xBAlWVC4wgSQoVUCghPyrQoEhHJlImUinCEzte5rTUfPbgur7VTUFWiAdO7nHKWJJnfR-Tp6T-6ML1t_HRexZzSNKShV5drpaxxzkKZt1bXwi5zSvLVEXJ_hHx9BI9PNpG9rKH4o79b9-BsDUzfbg_afENqYxrYRn8AV_adrQ</recordid><startdate>20160701</startdate><enddate>20160701</enddate><creator>Low, Van Lun</creator><creator>Takaoka, Hiroyuki</creator><creator>Pramual, Pairot</creator><creator>Adler, Peter H.</creator><creator>Ya’cob, Zubaidah</creator><creator>Chen, Chee Dhang</creator><creator>Yotopranoto, Subagyo</creator><creator>Zaid, Adnan</creator><creator>Hadi, Upik Kesumawati</creator><creator>Lardizabal, Maria Lourdes</creator><creator>Nasruddin-Roshidi, Affan</creator><creator>Sofian-Azirun, Mohd</creator><general>Entomological Society of America</general><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8C1</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>7X8</scope></search><sort><creationdate>20160701</creationdate><title>Three Taxa in One: Cryptic Diversity in the Black Fly Simulium nobile (Diptera: Simuliidae) in Southeast Asia</title><author>Low, Van Lun ; Takaoka, Hiroyuki ; Pramual, Pairot ; Adler, Peter H. ; Ya’cob, Zubaidah ; Chen, Chee Dhang ; Yotopranoto, Subagyo ; Zaid, Adnan ; Hadi, Upik Kesumawati ; Lardizabal, Maria Lourdes ; Nasruddin-Roshidi, Affan ; Sofian-Azirun, Mohd</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-b378t-bdcbb8b4c2a61d8be21f627eb3b73eecff6154e601abcce086f7dd6a4b72a71a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Animal populations</topic><topic>Animals</topic><topic>COI gene</topic><topic>Cryptic species</topic><topic>Electron Transport Complex IV - 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Our phylogenetic analyses recovered three well-supported mitochondrial lineages of S. nobile, suggesting the presence of cryptic species. Lineage A is composed of a population from Sabah, East Malaysia (Borneo); lineage B represents the type population from Java, Indonesia; and lineage C includes populations from the mainland of Southeast Asia (Peninsular Malaysia and Thailand). The genetic variation of lineage C on the mainland is greater than that of lineages A and B on the islands of Borneo and Java. Our study highlights the value of a molecular approach in assessing species status of simuliids in geographically distinct regions.</abstract><cop>England</cop><pub>Entomological Society of America</pub><pmid>27208009</pmid><doi>10.1093/jme/tjw058</doi><tpages>5</tpages></addata></record> |
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| ispartof | Journal of medical entomology, 2016-07, Vol.53 (4), p.972-976 |
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| source | MEDLINE; Oxford University Press Journals All Titles (1996-Current); Alma/SFX Local Collection |
| subjects | Animal populations Animals COI gene Cryptic species Electron Transport Complex IV - genetics Female Genetic diversity Genetic Speciation Genetic Variation Indonesia Insect Proteins - genetics Insects Larva - classification Larva - growth & development Malaysia Male Phylogenetics Phylogeny Population genetics Pupa - classification Pupa - genetics Pupa - growth & development Sequence Analysis, DNA SHORT COMMUNICATION Simuliidae - classification Simuliidae - genetics Simuliidae - growth & development Simulium nobile species group Sympatry systematics Thailand |
| title | Three Taxa in One: Cryptic Diversity in the Black Fly Simulium nobile (Diptera: Simuliidae) in Southeast Asia |
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