Actinoplanes tropicalis sp. nov. and Actinoplanes cibodasensis sp. nov., isolated from leaf litter

Actinoplanes tropicalis sp. nov. and Actinoplanes cibodasensis sp. nov., isolated from leaf litter

Two actinomycete strains, designated LIPI11-2-Ac034 and LIPI11-2-Ac042 , were isolated from leaf litter collected from Cibodas Botanical Garden, West Java, Indonesia. Phylogenetic analysis based on 16S rRNA gene sequences suggested that both isolates belong to the genus . These isolates were closely...

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Veröffentlicht in:International journal of systematic and evolutionary microbiology 2015-11, Vol.65 (11), p.3824-3829
Hauptverfasser: Nurkanto, Arif, Lisdiyanti, Puspita, Hamada, Moriyuki, Ratnakomala, Shanti, Shibata, Chiyo, Tamura, Tomohiko
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container_issue 11
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container_title International journal of systematic and evolutionary microbiology
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creator Nurkanto, Arif
Lisdiyanti, Puspita
Hamada, Moriyuki
Ratnakomala, Shanti
Shibata, Chiyo
Tamura, Tomohiko
description Two actinomycete strains, designated LIPI11-2-Ac034 and LIPI11-2-Ac042 , were isolated from leaf litter collected from Cibodas Botanical Garden, West Java, Indonesia. Phylogenetic analysis based on 16S rRNA gene sequences suggested that both isolates belong to the genus . These isolates were closely related to and with similarity values of 98.2 % and 97.7 % respectively, for strain LIPI11-2-Ac034 , and 99.0 % and 97.4-97.7 % respectively for strain LIPI11-2-Ac042 . Both isolates grew well on ISP 7 medium with brown soluble pigment production. Spores were motile and sporangia were irregular. The isolates contained -diaminopimelic acid in cell-wall hydrolysates, and mannose, glucose and galactose in whole-cell hydrolysates. The predominant menaquinone of strain LIPI11-2-Ac034 was MK-9(H4) while that of strain LIPI11-2-Ac042 was MK-9(H6). The major cellular fatty acids were iso-C , iso-C and anteiso-C for strain LIPI11-2-Ac034 , and iso-C , anteiso-C , iso-C and anteiso-C for strain LIPI11-2-Ac042 . Phosphatidylethanolamine was detected as the diagnostic polar lipid. The DNA G+C contents of strains LIPI11-2-Ac034 and LIPI11-2-Ac042 were 71.5 and 70.7 mol%, respectively. Based on the differential phenotypic characteristics and the results of DNA-DNA hybridization and phylogenetic analysis, it is proposed that strains LIPI11-2-Ac034 and LIPI11-2-Ac042 represent two novel species of the genus , for which the names sp. nov. (type strain LIPI11-2-Ac034  = InaCC A459  = NBRC 110973 ) and sp. nov. (type strain LIPI11-2-Ac042  = InaCC A458  = NBRC 110974 ) are proposed.
doi_str_mv 10.1099/ijsem.0.000499
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Phylogenetic analysis based on 16S rRNA gene sequences suggested that both isolates belong to the genus . These isolates were closely related to and with similarity values of 98.2 % and 97.7 % respectively, for strain LIPI11-2-Ac034 , and 99.0 % and 97.4-97.7 % respectively for strain LIPI11-2-Ac042 . Both isolates grew well on ISP 7 medium with brown soluble pigment production. Spores were motile and sporangia were irregular. The isolates contained -diaminopimelic acid in cell-wall hydrolysates, and mannose, glucose and galactose in whole-cell hydrolysates. The predominant menaquinone of strain LIPI11-2-Ac034 was MK-9(H4) while that of strain LIPI11-2-Ac042 was MK-9(H6). The major cellular fatty acids were iso-C , iso-C and anteiso-C for strain LIPI11-2-Ac034 , and iso-C , anteiso-C , iso-C and anteiso-C for strain LIPI11-2-Ac042 . Phosphatidylethanolamine was detected as the diagnostic polar lipid. The DNA G+C contents of strains LIPI11-2-Ac034 and LIPI11-2-Ac042 were 71.5 and 70.7 mol%, respectively. Based on the differential phenotypic characteristics and the results of DNA-DNA hybridization and phylogenetic analysis, it is proposed that strains LIPI11-2-Ac034 and LIPI11-2-Ac042 represent two novel species of the genus , for which the names sp. nov. (type strain LIPI11-2-Ac034  = InaCC A459  = NBRC 110973 ) and sp. nov. 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Phylogenetic analysis based on 16S rRNA gene sequences suggested that both isolates belong to the genus . These isolates were closely related to and with similarity values of 98.2 % and 97.7 % respectively, for strain LIPI11-2-Ac034 , and 99.0 % and 97.4-97.7 % respectively for strain LIPI11-2-Ac042 . Both isolates grew well on ISP 7 medium with brown soluble pigment production. Spores were motile and sporangia were irregular. The isolates contained -diaminopimelic acid in cell-wall hydrolysates, and mannose, glucose and galactose in whole-cell hydrolysates. The predominant menaquinone of strain LIPI11-2-Ac034 was MK-9(H4) while that of strain LIPI11-2-Ac042 was MK-9(H6). The major cellular fatty acids were iso-C , iso-C and anteiso-C for strain LIPI11-2-Ac034 , and iso-C , anteiso-C , iso-C and anteiso-C for strain LIPI11-2-Ac042 . Phosphatidylethanolamine was detected as the diagnostic polar lipid. The DNA G+C contents of strains LIPI11-2-Ac034 and LIPI11-2-Ac042 were 71.5 and 70.7 mol%, respectively. Based on the differential phenotypic characteristics and the results of DNA-DNA hybridization and phylogenetic analysis, it is proposed that strains LIPI11-2-Ac034 and LIPI11-2-Ac042 represent two novel species of the genus , for which the names sp. nov. (type strain LIPI11-2-Ac034  = InaCC A459  = NBRC 110973 ) and sp. nov. 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Phylogenetic analysis based on 16S rRNA gene sequences suggested that both isolates belong to the genus . These isolates were closely related to and with similarity values of 98.2 % and 97.7 % respectively, for strain LIPI11-2-Ac034 , and 99.0 % and 97.4-97.7 % respectively for strain LIPI11-2-Ac042 . Both isolates grew well on ISP 7 medium with brown soluble pigment production. Spores were motile and sporangia were irregular. The isolates contained -diaminopimelic acid in cell-wall hydrolysates, and mannose, glucose and galactose in whole-cell hydrolysates. The predominant menaquinone of strain LIPI11-2-Ac034 was MK-9(H4) while that of strain LIPI11-2-Ac042 was MK-9(H6). The major cellular fatty acids were iso-C , iso-C and anteiso-C for strain LIPI11-2-Ac034 , and iso-C , anteiso-C , iso-C and anteiso-C for strain LIPI11-2-Ac042 . Phosphatidylethanolamine was detected as the diagnostic polar lipid. The DNA G+C contents of strains LIPI11-2-Ac034 and LIPI11-2-Ac042 were 71.5 and 70.7 mol%, respectively. Based on the differential phenotypic characteristics and the results of DNA-DNA hybridization and phylogenetic analysis, it is proposed that strains LIPI11-2-Ac034 and LIPI11-2-Ac042 represent two novel species of the genus , for which the names sp. nov. (type strain LIPI11-2-Ac034  = InaCC A459  = NBRC 110973 ) and sp. nov. (type strain LIPI11-2-Ac042  = InaCC A458  = NBRC 110974 ) are proposed.</abstract><cop>England</cop><pmid>26238107</pmid><doi>10.1099/ijsem.0.000499</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record>
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title Actinoplanes tropicalis sp. nov. and Actinoplanes cibodasensis sp. nov., isolated from leaf litter
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