Chicken GRIFIN: A homodimeric member of the galectin network with canonical properties and a unique expression profile
Occurrence of the adhesion/growth-regulatory galectins as family sets the challenge to achieve a complete network analysis. Along this route taken for a well-suited model organism (chicken), we fill the remaining gap to characterize its seventh member known from rat as galectin-related inter-fiber p...
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creator | García Caballero, Gabriel Kaltner, Herbert Michalak, Malwina Shilova, Nadezhda Yegres, Michelle André, Sabine Ludwig, Anna-Kristin Manning, Joachim C. Schmidt, Sebastian Schnölzer, Martina Bovin, Nicolai V. Reusch, Dietmar Kopitz, Jürgen Gabius, Hans-Joachim |
description | Occurrence of the adhesion/growth-regulatory galectins as family sets the challenge to achieve a complete network analysis. Along this route taken for a well-suited model organism (chicken), we fill the remaining gap to characterize its seventh member known from rat as galectin-related inter-fiber protein (GRIFIN) in the lens. Its single-copy gene is common to vertebrates, with one or more deviations from the so-called signature sequence for ligand (lactose) contact. The chicken protein is a homodimeric agglutinin with capacity to bind β-galactosides, especially the histo-blood group B tetrasaccharide, shown by solid-phase/cell assays and a glycan microarray. Mass spectrometric identification of two lactose-binding peptides after tryptic on-bead fragmentation suggests an interaction at the canonical region despite a sequence change from Arg to Val at the site, which impairs reactivity of human galectin-1. RT-PCR and Western blot analyses of specimen from adult chicken organs reveal restriction of expression to the lens, here immunohistochemically throughout its main body. This report sets the stage for detailed structure-activity studies to define factors relevant for affinity beyond the signature sequence and to perform the first complete network analysis of the galectin family in developing and adult organs of a vertebrate.
•The single-copy gene for GRIFIN is characteristic for vertebrates.•Chicken GRIFIN is a homodimer with canonical lectin activity.•Non-sialylated β-galactosides bind despite a deviation from the signature sequence.•Trp at the contact site for lactose is markedly sensitive to oxidation.•First complete description of the galectin family in an organism is attained. |
doi_str_mv | 10.1016/j.biochi.2016.06.001 |
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•The single-copy gene for GRIFIN is characteristic for vertebrates.•Chicken GRIFIN is a homodimer with canonical lectin activity.•Non-sialylated β-galactosides bind despite a deviation from the signature sequence.•Trp at the contact site for lactose is markedly sensitive to oxidation.•First complete description of the galectin family in an organism is attained.</description><identifier>ISSN: 0300-9084</identifier><identifier>EISSN: 1638-6183</identifier><identifier>DOI: 10.1016/j.biochi.2016.06.001</identifier><identifier>PMID: 27296808</identifier><language>eng</language><publisher>France: Elsevier B.V</publisher><subject>Amino Acid Sequence ; Animals ; Avian Proteins - chemistry ; Avian Proteins - genetics ; Avian Proteins - metabolism ; Binding Sites - genetics ; Blotting, Western ; Chickens ; Eye Proteins - classification ; Eye Proteins - genetics ; Eye Proteins - metabolism ; Fiber cells ; Galectins - classification ; Galectins - genetics ; Galectins - metabolism ; Gene Expression Profiling - methods ; Gene Regulatory Networks ; Humans ; Immunohistochemistry ; In-source decay ; Lactose - metabolism ; Lectin ; Lens ; Lens, Crystalline - metabolism ; Phylogenesis ; Phylogeny ; Protein Binding ; Protein Multimerization ; Rats ; Recombinant Proteins - chemistry ; Recombinant Proteins - metabolism ; Reverse Transcriptase Polymerase Chain Reaction ; Sequence Homology, Amino Acid</subject><ispartof>Biochimie, 2016-09, Vol.128-129, p.34-47</ispartof><rights>2016 Elsevier B.V. and Société Française de Biochimie et Biologie Moléculaire (SFBBM)</rights><rights>Copyright © 2016 Elsevier B.V. and Société Française de Biochimie et Biologie Moléculaire (SFBBM). All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c362t-40e620a3153ec769539c7b8386a049cb533f902a9dc5172c0f0492c544694be3</citedby><cites>FETCH-LOGICAL-c362t-40e620a3153ec769539c7b8386a049cb533f902a9dc5172c0f0492c544694be3</cites><orcidid>0000-0002-6285-1842</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0300908416301109$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65534</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27296808$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>García Caballero, Gabriel</creatorcontrib><creatorcontrib>Kaltner, Herbert</creatorcontrib><creatorcontrib>Michalak, Malwina</creatorcontrib><creatorcontrib>Shilova, Nadezhda</creatorcontrib><creatorcontrib>Yegres, Michelle</creatorcontrib><creatorcontrib>André, Sabine</creatorcontrib><creatorcontrib>Ludwig, Anna-Kristin</creatorcontrib><creatorcontrib>Manning, Joachim C.</creatorcontrib><creatorcontrib>Schmidt, Sebastian</creatorcontrib><creatorcontrib>Schnölzer, Martina</creatorcontrib><creatorcontrib>Bovin, Nicolai V.</creatorcontrib><creatorcontrib>Reusch, Dietmar</creatorcontrib><creatorcontrib>Kopitz, Jürgen</creatorcontrib><creatorcontrib>Gabius, Hans-Joachim</creatorcontrib><title>Chicken GRIFIN: A homodimeric member of the galectin network with canonical properties and a unique expression profile</title><title>Biochimie</title><addtitle>Biochimie</addtitle><description>Occurrence of the adhesion/growth-regulatory galectins as family sets the challenge to achieve a complete network analysis. Along this route taken for a well-suited model organism (chicken), we fill the remaining gap to characterize its seventh member known from rat as galectin-related inter-fiber protein (GRIFIN) in the lens. Its single-copy gene is common to vertebrates, with one or more deviations from the so-called signature sequence for ligand (lactose) contact. The chicken protein is a homodimeric agglutinin with capacity to bind β-galactosides, especially the histo-blood group B tetrasaccharide, shown by solid-phase/cell assays and a glycan microarray. Mass spectrometric identification of two lactose-binding peptides after tryptic on-bead fragmentation suggests an interaction at the canonical region despite a sequence change from Arg to Val at the site, which impairs reactivity of human galectin-1. RT-PCR and Western blot analyses of specimen from adult chicken organs reveal restriction of expression to the lens, here immunohistochemically throughout its main body. This report sets the stage for detailed structure-activity studies to define factors relevant for affinity beyond the signature sequence and to perform the first complete network analysis of the galectin family in developing and adult organs of a vertebrate.
•The single-copy gene for GRIFIN is characteristic for vertebrates.•Chicken GRIFIN is a homodimer with canonical lectin activity.•Non-sialylated β-galactosides bind despite a deviation from the signature sequence.•Trp at the contact site for lactose is markedly sensitive to oxidation.•First complete description of the galectin family in an organism is attained.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Avian Proteins - chemistry</subject><subject>Avian Proteins - genetics</subject><subject>Avian Proteins - metabolism</subject><subject>Binding Sites - genetics</subject><subject>Blotting, Western</subject><subject>Chickens</subject><subject>Eye Proteins - classification</subject><subject>Eye Proteins - genetics</subject><subject>Eye Proteins - metabolism</subject><subject>Fiber cells</subject><subject>Galectins - classification</subject><subject>Galectins - genetics</subject><subject>Galectins - metabolism</subject><subject>Gene Expression Profiling - methods</subject><subject>Gene Regulatory Networks</subject><subject>Humans</subject><subject>Immunohistochemistry</subject><subject>In-source decay</subject><subject>Lactose - metabolism</subject><subject>Lectin</subject><subject>Lens</subject><subject>Lens, Crystalline - metabolism</subject><subject>Phylogenesis</subject><subject>Phylogeny</subject><subject>Protein Binding</subject><subject>Protein Multimerization</subject><subject>Rats</subject><subject>Recombinant Proteins - chemistry</subject><subject>Recombinant Proteins - metabolism</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>Sequence Homology, Amino Acid</subject><issn>0300-9084</issn><issn>1638-6183</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kFFrFDEQx4Mo9qx-A5E8-rLnJNnNbXwQymHrQVGQvodsdtad625yJnutfntzXPVRGBgSfpN_5sfYWwFrAUJ_2K87in6ktSynNZQC8YythFZtpUWrnrMVKIDKQFtfsFc57wGgAWlesgu5kUa30K7Yw3Ykf4-B33zfXe--fuRXfIxz7GnGRJ7POHeYeBz4MiL_4Sb0CwUecHmM6Z4_0jJy70IM5N3EDykeMC2EmbvQc8ePgX4ekeOvQ8KcKYYTMtCEr9mLwU0Z3zz1S3Z3_flu-6W6_Xaz217dVl5puVQ1oJbglGgU-o02jTJ-07Wq1Q5q47tGqcGAdKb3jdhID0O5lr6pa23qDtUle39-tsSWj-TFzpQ9TpMLGI_ZilbWUmptREHrM-pTzDnhYA-JZpd-WwH2JNzu7Vm4PQm3UApOY--eEo7djP2_ob-GC_DpDGBZ84Ew2ewJg8eeUpFp-0j_T_gD9heTUQ</recordid><startdate>201609</startdate><enddate>201609</enddate><creator>García Caballero, Gabriel</creator><creator>Kaltner, Herbert</creator><creator>Michalak, Malwina</creator><creator>Shilova, Nadezhda</creator><creator>Yegres, Michelle</creator><creator>André, Sabine</creator><creator>Ludwig, Anna-Kristin</creator><creator>Manning, Joachim C.</creator><creator>Schmidt, Sebastian</creator><creator>Schnölzer, Martina</creator><creator>Bovin, Nicolai V.</creator><creator>Reusch, Dietmar</creator><creator>Kopitz, Jürgen</creator><creator>Gabius, Hans-Joachim</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-6285-1842</orcidid></search><sort><creationdate>201609</creationdate><title>Chicken GRIFIN: A homodimeric member of the galectin network with canonical properties and a unique expression profile</title><author>García Caballero, Gabriel ; Kaltner, Herbert ; Michalak, Malwina ; Shilova, Nadezhda ; Yegres, Michelle ; André, Sabine ; Ludwig, Anna-Kristin ; Manning, Joachim C. ; Schmidt, Sebastian ; Schnölzer, Martina ; Bovin, Nicolai V. ; Reusch, Dietmar ; Kopitz, Jürgen ; Gabius, Hans-Joachim</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c362t-40e620a3153ec769539c7b8386a049cb533f902a9dc5172c0f0492c544694be3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Avian Proteins - chemistry</topic><topic>Avian Proteins - genetics</topic><topic>Avian Proteins - metabolism</topic><topic>Binding Sites - genetics</topic><topic>Blotting, Western</topic><topic>Chickens</topic><topic>Eye Proteins - classification</topic><topic>Eye Proteins - genetics</topic><topic>Eye Proteins - metabolism</topic><topic>Fiber cells</topic><topic>Galectins - classification</topic><topic>Galectins - genetics</topic><topic>Galectins - metabolism</topic><topic>Gene Expression Profiling - methods</topic><topic>Gene Regulatory Networks</topic><topic>Humans</topic><topic>Immunohistochemistry</topic><topic>In-source decay</topic><topic>Lactose - metabolism</topic><topic>Lectin</topic><topic>Lens</topic><topic>Lens, Crystalline - metabolism</topic><topic>Phylogenesis</topic><topic>Phylogeny</topic><topic>Protein Binding</topic><topic>Protein Multimerization</topic><topic>Rats</topic><topic>Recombinant Proteins - chemistry</topic><topic>Recombinant Proteins - metabolism</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>Sequence Homology, Amino Acid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>García Caballero, Gabriel</creatorcontrib><creatorcontrib>Kaltner, Herbert</creatorcontrib><creatorcontrib>Michalak, Malwina</creatorcontrib><creatorcontrib>Shilova, Nadezhda</creatorcontrib><creatorcontrib>Yegres, Michelle</creatorcontrib><creatorcontrib>André, Sabine</creatorcontrib><creatorcontrib>Ludwig, Anna-Kristin</creatorcontrib><creatorcontrib>Manning, Joachim C.</creatorcontrib><creatorcontrib>Schmidt, Sebastian</creatorcontrib><creatorcontrib>Schnölzer, Martina</creatorcontrib><creatorcontrib>Bovin, Nicolai V.</creatorcontrib><creatorcontrib>Reusch, Dietmar</creatorcontrib><creatorcontrib>Kopitz, Jürgen</creatorcontrib><creatorcontrib>Gabius, Hans-Joachim</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Biochimie</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>García Caballero, Gabriel</au><au>Kaltner, Herbert</au><au>Michalak, Malwina</au><au>Shilova, Nadezhda</au><au>Yegres, Michelle</au><au>André, Sabine</au><au>Ludwig, Anna-Kristin</au><au>Manning, Joachim C.</au><au>Schmidt, Sebastian</au><au>Schnölzer, Martina</au><au>Bovin, Nicolai V.</au><au>Reusch, Dietmar</au><au>Kopitz, Jürgen</au><au>Gabius, Hans-Joachim</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chicken GRIFIN: A homodimeric member of the galectin network with canonical properties and a unique expression profile</atitle><jtitle>Biochimie</jtitle><addtitle>Biochimie</addtitle><date>2016-09</date><risdate>2016</risdate><volume>128-129</volume><spage>34</spage><epage>47</epage><pages>34-47</pages><issn>0300-9084</issn><eissn>1638-6183</eissn><abstract>Occurrence of the adhesion/growth-regulatory galectins as family sets the challenge to achieve a complete network analysis. Along this route taken for a well-suited model organism (chicken), we fill the remaining gap to characterize its seventh member known from rat as galectin-related inter-fiber protein (GRIFIN) in the lens. Its single-copy gene is common to vertebrates, with one or more deviations from the so-called signature sequence for ligand (lactose) contact. The chicken protein is a homodimeric agglutinin with capacity to bind β-galactosides, especially the histo-blood group B tetrasaccharide, shown by solid-phase/cell assays and a glycan microarray. Mass spectrometric identification of two lactose-binding peptides after tryptic on-bead fragmentation suggests an interaction at the canonical region despite a sequence change from Arg to Val at the site, which impairs reactivity of human galectin-1. RT-PCR and Western blot analyses of specimen from adult chicken organs reveal restriction of expression to the lens, here immunohistochemically throughout its main body. This report sets the stage for detailed structure-activity studies to define factors relevant for affinity beyond the signature sequence and to perform the first complete network analysis of the galectin family in developing and adult organs of a vertebrate.
•The single-copy gene for GRIFIN is characteristic for vertebrates.•Chicken GRIFIN is a homodimer with canonical lectin activity.•Non-sialylated β-galactosides bind despite a deviation from the signature sequence.•Trp at the contact site for lactose is markedly sensitive to oxidation.•First complete description of the galectin family in an organism is attained.</abstract><cop>France</cop><pub>Elsevier B.V</pub><pmid>27296808</pmid><doi>10.1016/j.biochi.2016.06.001</doi><tpages>14</tpages><orcidid>https://orcid.org/0000-0002-6285-1842</orcidid></addata></record> |
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subjects | Amino Acid Sequence Animals Avian Proteins - chemistry Avian Proteins - genetics Avian Proteins - metabolism Binding Sites - genetics Blotting, Western Chickens Eye Proteins - classification Eye Proteins - genetics Eye Proteins - metabolism Fiber cells Galectins - classification Galectins - genetics Galectins - metabolism Gene Expression Profiling - methods Gene Regulatory Networks Humans Immunohistochemistry In-source decay Lactose - metabolism Lectin Lens Lens, Crystalline - metabolism Phylogenesis Phylogeny Protein Binding Protein Multimerization Rats Recombinant Proteins - chemistry Recombinant Proteins - metabolism Reverse Transcriptase Polymerase Chain Reaction Sequence Homology, Amino Acid |
title | Chicken GRIFIN: A homodimeric member of the galectin network with canonical properties and a unique expression profile |
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