The role of T56 in controlling the flexibility of the distal histidine in dehaloperoxidase-hemoglobin from Amphitrite ornata

The activation of dehaloperoxidase-hemoglobin (DHP) to form a ferryl intermediate requires the distal histidine, H55, to act as an acid base catalyst. The lack of ancillary amino acids in the distal pocket to assist in this process makes H55 even more important to the formation of active intermediat...

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Veröffentlicht in:Biochimica et biophysica acta 2013-10, Vol.1834 (10), p.2020-2029
Hauptverfasser: Jiang, Shu, Wright, Iain, Swartz, Paul, Franzen, Stefan
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Wright, Iain
Swartz, Paul
Franzen, Stefan
description The activation of dehaloperoxidase-hemoglobin (DHP) to form a ferryl intermediate requires the distal histidine, H55, to act as an acid base catalyst. The lack of ancillary amino acids in the distal pocket to assist in this process makes H55 even more important to the formation of active intermediates than in conventional peroxidases. Therefore, one can infer that the precise conformation H55 may greatly affect the enzymatic activity. Using site-direct mutagenesis at position T56, immediately adjacent to H55, we have confirmed that subtle changes in the conformation of H55 affect the catalytic efficiency of DHP. Mutating T56 to a smaller amino acid appears to permit H55 to rotate with relatively low barriers between conformations in the distal pocket, which may lead to an increase in catalytic activity. On the other hand, larger amino acids in the neighboring site appear to restrict the rotation of H55 due to the steric hindrance. In the case of T56V, which is an isosteric mutation, H55 appears less mobile, but forced to be closer to the heme iron than in wild type. Both proximity to the heme iron and flexibility of motion in some of the mutants can result in an increased catalytic rate, but can also lead to protein inactivation due to ligation of H55 to the heme iron, which is known as hemichrome formation. A balance of enzymatic rate and protein stability with respect to hemichrome formation appears to be optimum in wild type DHP (WT-DHP). •Mutation of position 56 affects conformations of the distal histidine (H55)•Competition between catalytic efficiency and hemichrome formation•Increased motion of H55 correlates for H2O2 on-rate for binding to the heme•Inactivation due to hemichrome formation is accelerated in the mutants•Wild type has optimal catalytic efficiency with minimal inactivation
doi_str_mv 10.1016/j.bbapap.2013.06.005
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The lack of ancillary amino acids in the distal pocket to assist in this process makes H55 even more important to the formation of active intermediates than in conventional peroxidases. Therefore, one can infer that the precise conformation H55 may greatly affect the enzymatic activity. Using site-direct mutagenesis at position T56, immediately adjacent to H55, we have confirmed that subtle changes in the conformation of H55 affect the catalytic efficiency of DHP. Mutating T56 to a smaller amino acid appears to permit H55 to rotate with relatively low barriers between conformations in the distal pocket, which may lead to an increase in catalytic activity. On the other hand, larger amino acids in the neighboring site appear to restrict the rotation of H55 due to the steric hindrance. In the case of T56V, which is an isosteric mutation, H55 appears less mobile, but forced to be closer to the heme iron than in wild type. Both proximity to the heme iron and flexibility of motion in some of the mutants can result in an increased catalytic rate, but can also lead to protein inactivation due to ligation of H55 to the heme iron, which is known as hemichrome formation. A balance of enzymatic rate and protein stability with respect to hemichrome formation appears to be optimum in wild type DHP (WT-DHP). •Mutation of position 56 affects conformations of the distal histidine (H55)•Competition between catalytic efficiency and hemichrome formation•Increased motion of H55 correlates for H2O2 on-rate for binding to the heme•Inactivation due to hemichrome formation is accelerated in the mutants•Wild type has optimal catalytic efficiency with minimal inactivation</description><subject>Amphitrite ornata</subject><subject>Animals</subject><subject>Biocatalysis</subject><subject>catalysts</subject><subject>catalytic activity</subject><subject>Catalytic efficiency</subject><subject>enzyme activity</subject><subject>Enzyme kinetics</subject><subject>Heme - chemistry</subject><subject>heme iron</subject><subject>Hemichrome</subject><subject>Hemoglobins - chemistry</subject><subject>Hemoglobins - genetics</subject><subject>histidine</subject><subject>Histidine - chemistry</subject><subject>Histidine - genetics</subject><subject>Iron - chemistry</subject><subject>Kinetics</subject><subject>Molecular dynamics</subject><subject>Molecular Dynamics Simulation</subject><subject>mutagenesis</subject><subject>Mutagenesis, Site-Directed</subject><subject>mutants</subject><subject>peroxidases</subject><subject>Peroxidases - chemistry</subject><subject>Peroxidases - genetics</subject><subject>Polychaeta - chemistry</subject><subject>Polychaeta - enzymology</subject><subject>Recombinant Proteins - chemistry</subject><subject>Recombinant Proteins - genetics</subject><subject>Resonance Raman</subject><subject>Spectroscopy, Fourier Transform Infrared</subject><subject>Spectrum Analysis, Raman</subject><subject>Thermodynamics</subject><subject>Threonine - chemistry</subject><subject>Threonine - genetics</subject><issn>1570-9639</issn><issn>0006-3002</issn><issn>1878-1454</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kctu1TAQQCMEoqXwBwiyZJMwdhzH2SBVFS-pEgtu15YdT2585cTB9q1aiY_HUQpLVmPNnHnouCjeEqgJEP7xVGutVrXWFEhTA68B2mfFJRGdqAhr2fP8bjuoet70F8WrGE8AFLqufVlc0KbracfpZfH7MGEZvMPSj-Wh5aVdysEvKaecXY5lyuXR4YPV1tn0uFFbytiYlCunHKyxC25tBifl_IrBP1ijIlYTzv7ovM61Mfi5vJ7XyaZgU14WFpXU6-LFqFzEN0_xqrj78vlw8626_fH1-831bTUw0aaKkZYR0CiMZmMjOkO10qAp6caGcy56IAi9GMZWkIHoHhSBBrgWjHJiiG6uig_73DX4X2eMSc42DuicWtCfoySCNj3jlPOMsh0dgo8x4CjXYGcVHiUBuXmXJ7l7l5t3CVxm77nt3dOGs57R_Gv6KzoD73dgVF6qY7BR3v3ME9r8KYT1sBGfdgKziXuLQcbB4jKgsQGHJI23_7_hD9Non5k</recordid><startdate>20131001</startdate><enddate>20131001</enddate><creator>Jiang, Shu</creator><creator>Wright, Iain</creator><creator>Swartz, Paul</creator><creator>Franzen, Stefan</creator><general>Elsevier B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope></search><sort><creationdate>20131001</creationdate><title>The role of T56 in controlling the flexibility of the distal histidine in dehaloperoxidase-hemoglobin from Amphitrite ornata</title><author>Jiang, Shu ; Wright, Iain ; Swartz, Paul ; Franzen, Stefan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c485t-415410be8db4f387d2bab0b217f36668901e098cf581c1b90a10306b84261d1b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Amphitrite ornata</topic><topic>Animals</topic><topic>Biocatalysis</topic><topic>catalysts</topic><topic>catalytic activity</topic><topic>Catalytic efficiency</topic><topic>enzyme activity</topic><topic>Enzyme kinetics</topic><topic>Heme - chemistry</topic><topic>heme iron</topic><topic>Hemichrome</topic><topic>Hemoglobins - chemistry</topic><topic>Hemoglobins - genetics</topic><topic>histidine</topic><topic>Histidine - chemistry</topic><topic>Histidine - genetics</topic><topic>Iron - chemistry</topic><topic>Kinetics</topic><topic>Molecular dynamics</topic><topic>Molecular Dynamics Simulation</topic><topic>mutagenesis</topic><topic>Mutagenesis, Site-Directed</topic><topic>mutants</topic><topic>peroxidases</topic><topic>Peroxidases - chemistry</topic><topic>Peroxidases - genetics</topic><topic>Polychaeta - chemistry</topic><topic>Polychaeta - enzymology</topic><topic>Recombinant Proteins - chemistry</topic><topic>Recombinant Proteins - genetics</topic><topic>Resonance Raman</topic><topic>Spectroscopy, Fourier Transform Infrared</topic><topic>Spectrum Analysis, Raman</topic><topic>Thermodynamics</topic><topic>Threonine - chemistry</topic><topic>Threonine - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jiang, Shu</creatorcontrib><creatorcontrib>Wright, Iain</creatorcontrib><creatorcontrib>Swartz, Paul</creatorcontrib><creatorcontrib>Franzen, Stefan</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><jtitle>Biochimica et biophysica acta</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jiang, Shu</au><au>Wright, Iain</au><au>Swartz, Paul</au><au>Franzen, Stefan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The role of T56 in controlling the flexibility of the distal histidine in dehaloperoxidase-hemoglobin from Amphitrite ornata</atitle><jtitle>Biochimica et biophysica acta</jtitle><addtitle>Biochim Biophys Acta</addtitle><date>2013-10-01</date><risdate>2013</risdate><volume>1834</volume><issue>10</issue><spage>2020</spage><epage>2029</epage><pages>2020-2029</pages><issn>1570-9639</issn><issn>0006-3002</issn><eissn>1878-1454</eissn><abstract>The activation of dehaloperoxidase-hemoglobin (DHP) to form a ferryl intermediate requires the distal histidine, H55, to act as an acid base catalyst. The lack of ancillary amino acids in the distal pocket to assist in this process makes H55 even more important to the formation of active intermediates than in conventional peroxidases. Therefore, one can infer that the precise conformation H55 may greatly affect the enzymatic activity. Using site-direct mutagenesis at position T56, immediately adjacent to H55, we have confirmed that subtle changes in the conformation of H55 affect the catalytic efficiency of DHP. Mutating T56 to a smaller amino acid appears to permit H55 to rotate with relatively low barriers between conformations in the distal pocket, which may lead to an increase in catalytic activity. On the other hand, larger amino acids in the neighboring site appear to restrict the rotation of H55 due to the steric hindrance. In the case of T56V, which is an isosteric mutation, H55 appears less mobile, but forced to be closer to the heme iron than in wild type. Both proximity to the heme iron and flexibility of motion in some of the mutants can result in an increased catalytic rate, but can also lead to protein inactivation due to ligation of H55 to the heme iron, which is known as hemichrome formation. A balance of enzymatic rate and protein stability with respect to hemichrome formation appears to be optimum in wild type DHP (WT-DHP). •Mutation of position 56 affects conformations of the distal histidine (H55)•Competition between catalytic efficiency and hemichrome formation•Increased motion of H55 correlates for H2O2 on-rate for binding to the heme•Inactivation due to hemichrome formation is accelerated in the mutants•Wild type has optimal catalytic efficiency with minimal inactivation</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>23792762</pmid><doi>10.1016/j.bbapap.2013.06.005</doi><tpages>10</tpages></addata></record>
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source MEDLINE; Elsevier ScienceDirect Journals
subjects Amphitrite ornata
Animals
Biocatalysis
catalysts
catalytic activity
Catalytic efficiency
enzyme activity
Enzyme kinetics
Heme - chemistry
heme iron
Hemichrome
Hemoglobins - chemistry
Hemoglobins - genetics
histidine
Histidine - chemistry
Histidine - genetics
Iron - chemistry
Kinetics
Molecular dynamics
Molecular Dynamics Simulation
mutagenesis
Mutagenesis, Site-Directed
mutants
peroxidases
Peroxidases - chemistry
Peroxidases - genetics
Polychaeta - chemistry
Polychaeta - enzymology
Recombinant Proteins - chemistry
Recombinant Proteins - genetics
Resonance Raman
Spectroscopy, Fourier Transform Infrared
Spectrum Analysis, Raman
Thermodynamics
Threonine - chemistry
Threonine - genetics
title The role of T56 in controlling the flexibility of the distal histidine in dehaloperoxidase-hemoglobin from Amphitrite ornata
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