First detection and molecular characterization of sapoviruses and noroviruses with zoonotic potential in swine in Ethiopia
Noroviruses (NoVs) and sapoviruses (SaVs), which belong to the family Caliciviridae , are important human and animal enteric pathogens with zoonotic potential. In Ethiopia, no study has been done on the epidemiology of animal NoVs and SaVs. The aim of this study was to detect and characterize NoVs a...
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| Veröffentlicht in: | Archives of virology 2016-10, Vol.161 (10), p.2739-2747 |
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| creator | Sisay, Zufan Djikeng, Appolinaire Berhe, Nega Belay, Gurja Abegaz, Woldaregay Erku Wang, Q. H. Saif, Linda J. |
| description | Noroviruses (NoVs) and sapoviruses (SaVs), which belong to the family
Caliciviridae
, are important human and animal enteric pathogens with zoonotic potential. In Ethiopia, no study has been done on the epidemiology of animal NoVs and SaVs. The aim of this study was to detect and characterize NoVs and SaVs from swine of various ages. Swine fecal samples (n = 117) were collected from commercial farms in Ethiopia. The samples were screened for caliciviruses by reverse transcription polymerase chain reaction (RT-PCR) using universal and genogroup-specific primer pairs. Phylogenetic analysis was conducted using a portion of the RNA-dependent RNA polymerase (RdRp) region and the VP1 region of genome sequences of caliciviruses. Among 117 samples, potential caliciviruses were detected by RT-PCR in 17 samples (14.5 %). Of the RT-PCR-positive fecal samples, four were sequenced, of which two were identified as human NoV GII.1 and the other two as porcine SaV GIII. The porcine SaV strains that were detected were genetically related to the porcine enteric calicivirus Cowden strain genogroup III (GIII), which is the prototype porcine SaV strain. No porcine NoVs were detected. Our results showed the presence of NoVs in swine that are most similar to human strains. These findings have important implications for NoV epidemiology and food safety. Therefore, continued surveillance of NoVs in swine is needed to define their zoonotic potential, epidemiology and public and animal health impact. This is the first study to investigate enteric caliciviruses (noroviruses and sapoviruses) in swine in Ethiopia. |
| doi_str_mv | 10.1007/s00705-016-2974-9 |
| format | Article |
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Caliciviridae
, are important human and animal enteric pathogens with zoonotic potential. In Ethiopia, no study has been done on the epidemiology of animal NoVs and SaVs. The aim of this study was to detect and characterize NoVs and SaVs from swine of various ages. Swine fecal samples (n = 117) were collected from commercial farms in Ethiopia. The samples were screened for caliciviruses by reverse transcription polymerase chain reaction (RT-PCR) using universal and genogroup-specific primer pairs. Phylogenetic analysis was conducted using a portion of the RNA-dependent RNA polymerase (RdRp) region and the VP1 region of genome sequences of caliciviruses. Among 117 samples, potential caliciviruses were detected by RT-PCR in 17 samples (14.5 %). Of the RT-PCR-positive fecal samples, four were sequenced, of which two were identified as human NoV GII.1 and the other two as porcine SaV GIII. The porcine SaV strains that were detected were genetically related to the porcine enteric calicivirus Cowden strain genogroup III (GIII), which is the prototype porcine SaV strain. No porcine NoVs were detected. Our results showed the presence of NoVs in swine that are most similar to human strains. These findings have important implications for NoV epidemiology and food safety. Therefore, continued surveillance of NoVs in swine is needed to define their zoonotic potential, epidemiology and public and animal health impact. This is the first study to investigate enteric caliciviruses (noroviruses and sapoviruses) in swine in Ethiopia.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-016-2974-9</identifier><identifier>PMID: 27424025</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Animals ; Biomedical and Life Sciences ; Biomedicine ; Caliciviridae ; Caliciviridae Infections - veterinary ; Caliciviridae Infections - virology ; Cluster Analysis ; Epidemiology ; Ethiopia ; Feces ; Feces - virology ; Genomes ; Hogs ; Infectious Diseases ; Medical Microbiology ; Medical research ; Norovirus ; Norovirus - classification ; Norovirus - genetics ; Norovirus - isolation & purification ; Original Article ; Pathogens ; Phylogenetics ; Phylogeny ; Porcine enteric calicivirus ; Reverse Transcriptase Polymerase Chain Reaction ; RNA polymerase ; Sapovirus - classification ; Sapovirus - genetics ; Sapovirus - isolation & purification ; Sequence Analysis, DNA ; Sequence Homology ; Swine ; Swine Diseases - virology ; Viral Proteins - genetics ; Virology ; Zoonoses</subject><ispartof>Archives of virology, 2016-10, Vol.161 (10), p.2739-2747</ispartof><rights>Springer-Verlag Wien 2016</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c405t-633e6f1c8806190f516eb3c22b1bec2cae444b5c1401d6f6be543352156c4fa23</citedby><cites>FETCH-LOGICAL-c405t-633e6f1c8806190f516eb3c22b1bec2cae444b5c1401d6f6be543352156c4fa23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-016-2974-9$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-016-2974-9$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27424025$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sisay, Zufan</creatorcontrib><creatorcontrib>Djikeng, Appolinaire</creatorcontrib><creatorcontrib>Berhe, Nega</creatorcontrib><creatorcontrib>Belay, Gurja</creatorcontrib><creatorcontrib>Abegaz, Woldaregay Erku</creatorcontrib><creatorcontrib>Wang, Q. H.</creatorcontrib><creatorcontrib>Saif, Linda J.</creatorcontrib><title>First detection and molecular characterization of sapoviruses and noroviruses with zoonotic potential in swine in Ethiopia</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Noroviruses (NoVs) and sapoviruses (SaVs), which belong to the family
Caliciviridae
, are important human and animal enteric pathogens with zoonotic potential. In Ethiopia, no study has been done on the epidemiology of animal NoVs and SaVs. The aim of this study was to detect and characterize NoVs and SaVs from swine of various ages. Swine fecal samples (n = 117) were collected from commercial farms in Ethiopia. The samples were screened for caliciviruses by reverse transcription polymerase chain reaction (RT-PCR) using universal and genogroup-specific primer pairs. Phylogenetic analysis was conducted using a portion of the RNA-dependent RNA polymerase (RdRp) region and the VP1 region of genome sequences of caliciviruses. Among 117 samples, potential caliciviruses were detected by RT-PCR in 17 samples (14.5 %). Of the RT-PCR-positive fecal samples, four were sequenced, of which two were identified as human NoV GII.1 and the other two as porcine SaV GIII. The porcine SaV strains that were detected were genetically related to the porcine enteric calicivirus Cowden strain genogroup III (GIII), which is the prototype porcine SaV strain. No porcine NoVs were detected. Our results showed the presence of NoVs in swine that are most similar to human strains. These findings have important implications for NoV epidemiology and food safety. Therefore, continued surveillance of NoVs in swine is needed to define their zoonotic potential, epidemiology and public and animal health impact. This is the first study to investigate enteric caliciviruses (noroviruses and sapoviruses) in swine in Ethiopia.</description><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Caliciviridae</subject><subject>Caliciviridae Infections - veterinary</subject><subject>Caliciviridae Infections - virology</subject><subject>Cluster Analysis</subject><subject>Epidemiology</subject><subject>Ethiopia</subject><subject>Feces</subject><subject>Feces - virology</subject><subject>Genomes</subject><subject>Hogs</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Medical research</subject><subject>Norovirus</subject><subject>Norovirus - classification</subject><subject>Norovirus - genetics</subject><subject>Norovirus - isolation & purification</subject><subject>Original Article</subject><subject>Pathogens</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Porcine enteric calicivirus</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>RNA polymerase</subject><subject>Sapovirus - classification</subject><subject>Sapovirus - genetics</subject><subject>Sapovirus - isolation & purification</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology</subject><subject>Swine</subject><subject>Swine Diseases - virology</subject><subject>Viral Proteins - genetics</subject><subject>Virology</subject><subject>Zoonoses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkUuLFDEURoMoTs_jB7iRgJvZlN48q2opwzyEATe6Dqn0LTtDdVImKQf715vuHgcRBDdJbu65XwiHkDcM3jOA9kOuC6gGmG5438qmf0FWTAredG3fvSQrECCbTkN3Qk5zfgCoF0K9Jie8lVwCVyuyu_EpF7rGgq74GKgNa7qNE7plsom6jU3WFUx-Zw_tONJs5_jDpyVjPtAhpuf60ZcN3cUYYvGOzrFgKN5O1AeaH33A_eG6bHycvT0nr0Y7Zbx42s_I15vrL1d3zf3n209XH-8bJ0GVRguBemSu60CzHkbFNA7CcT6wAR13FqWUg3JMAlvrUQ-opBCKM6WdHC0XZ-TymDun-H3BXMzWZ4fTZAPGJRvWsZ5J2cJ_oUp30Pasou_-Qh_ikkL9yIHiveZCVIodKZdizglHMye_temnYWD2Ds3RoakOzd6h6evM26fkZdji-nnit7QK8COQayt8w_TH0_9M_QV-M6gZ</recordid><startdate>20161001</startdate><enddate>20161001</enddate><creator>Sisay, Zufan</creator><creator>Djikeng, Appolinaire</creator><creator>Berhe, Nega</creator><creator>Belay, Gurja</creator><creator>Abegaz, Woldaregay Erku</creator><creator>Wang, Q. H.</creator><creator>Saif, Linda J.</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20161001</creationdate><title>First detection and molecular characterization of sapoviruses and noroviruses with zoonotic potential in swine in Ethiopia</title><author>Sisay, Zufan ; Djikeng, Appolinaire ; Berhe, Nega ; Belay, Gurja ; Abegaz, Woldaregay Erku ; Wang, Q. H. ; Saif, Linda J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c405t-633e6f1c8806190f516eb3c22b1bec2cae444b5c1401d6f6be543352156c4fa23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Animals</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Caliciviridae</topic><topic>Caliciviridae Infections - veterinary</topic><topic>Caliciviridae Infections - virology</topic><topic>Cluster Analysis</topic><topic>Epidemiology</topic><topic>Ethiopia</topic><topic>Feces</topic><topic>Feces - virology</topic><topic>Genomes</topic><topic>Hogs</topic><topic>Infectious Diseases</topic><topic>Medical Microbiology</topic><topic>Medical research</topic><topic>Norovirus</topic><topic>Norovirus - classification</topic><topic>Norovirus - genetics</topic><topic>Norovirus - isolation & purification</topic><topic>Original Article</topic><topic>Pathogens</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Porcine enteric calicivirus</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>RNA polymerase</topic><topic>Sapovirus - classification</topic><topic>Sapovirus - genetics</topic><topic>Sapovirus - isolation & purification</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology</topic><topic>Swine</topic><topic>Swine Diseases - virology</topic><topic>Viral Proteins - genetics</topic><topic>Virology</topic><topic>Zoonoses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sisay, Zufan</creatorcontrib><creatorcontrib>Djikeng, Appolinaire</creatorcontrib><creatorcontrib>Berhe, Nega</creatorcontrib><creatorcontrib>Belay, Gurja</creatorcontrib><creatorcontrib>Abegaz, Woldaregay Erku</creatorcontrib><creatorcontrib>Wang, Q. 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H.</au><au>Saif, Linda J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>First detection and molecular characterization of sapoviruses and noroviruses with zoonotic potential in swine in Ethiopia</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2016-10-01</date><risdate>2016</risdate><volume>161</volume><issue>10</issue><spage>2739</spage><epage>2747</epage><pages>2739-2747</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Noroviruses (NoVs) and sapoviruses (SaVs), which belong to the family
Caliciviridae
, are important human and animal enteric pathogens with zoonotic potential. In Ethiopia, no study has been done on the epidemiology of animal NoVs and SaVs. The aim of this study was to detect and characterize NoVs and SaVs from swine of various ages. Swine fecal samples (n = 117) were collected from commercial farms in Ethiopia. The samples were screened for caliciviruses by reverse transcription polymerase chain reaction (RT-PCR) using universal and genogroup-specific primer pairs. Phylogenetic analysis was conducted using a portion of the RNA-dependent RNA polymerase (RdRp) region and the VP1 region of genome sequences of caliciviruses. Among 117 samples, potential caliciviruses were detected by RT-PCR in 17 samples (14.5 %). Of the RT-PCR-positive fecal samples, four were sequenced, of which two were identified as human NoV GII.1 and the other two as porcine SaV GIII. The porcine SaV strains that were detected were genetically related to the porcine enteric calicivirus Cowden strain genogroup III (GIII), which is the prototype porcine SaV strain. No porcine NoVs were detected. Our results showed the presence of NoVs in swine that are most similar to human strains. These findings have important implications for NoV epidemiology and food safety. Therefore, continued surveillance of NoVs in swine is needed to define their zoonotic potential, epidemiology and public and animal health impact. This is the first study to investigate enteric caliciviruses (noroviruses and sapoviruses) in swine in Ethiopia.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>27424025</pmid><doi>10.1007/s00705-016-2974-9</doi><tpages>9</tpages></addata></record> |
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| ispartof | Archives of virology, 2016-10, Vol.161 (10), p.2739-2747 |
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| source | MEDLINE; SpringerNature Journals |
| subjects | Animals Biomedical and Life Sciences Biomedicine Caliciviridae Caliciviridae Infections - veterinary Caliciviridae Infections - virology Cluster Analysis Epidemiology Ethiopia Feces Feces - virology Genomes Hogs Infectious Diseases Medical Microbiology Medical research Norovirus Norovirus - classification Norovirus - genetics Norovirus - isolation & purification Original Article Pathogens Phylogenetics Phylogeny Porcine enteric calicivirus Reverse Transcriptase Polymerase Chain Reaction RNA polymerase Sapovirus - classification Sapovirus - genetics Sapovirus - isolation & purification Sequence Analysis, DNA Sequence Homology Swine Swine Diseases - virology Viral Proteins - genetics Virology Zoonoses |
| title | First detection and molecular characterization of sapoviruses and noroviruses with zoonotic potential in swine in Ethiopia |
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