The crystal structure of the ligand‐binding region of serine‐glutamate repeat containing protein A (SgrA) of Enterococcus faecium reveals a new protein fold: functional characterization and insights into its adhesion function

Antimicrobial‐resistant and hospital‐adapted Enterococcus faecium represents a clinical problem in immunocompromised patients in hospitals worldwide. Understanding the molecular pathogenesis of E. faecium infections may provide novel therapies to treat or prevent infections. A potential target for n...

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Veröffentlicht in:The FEBS journal 2016-08, Vol.283 (16), p.3039-3055
Hauptverfasser: Nagarajan, Revathi, Hendrickx, Antoni P. A., Ponnuraj, Karthe
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Ponnuraj, Karthe
description Antimicrobial‐resistant and hospital‐adapted Enterococcus faecium represents a clinical problem in immunocompromised patients in hospitals worldwide. Understanding the molecular pathogenesis of E. faecium infections may provide novel therapies to treat or prevent infections. A potential target for novel treatment therapies is the serine‐glutamate repeat containing protein A (SgrA), which is a cell wall‐anchored LPxTG surface protein implicated in binding to fibrinogen and nidogen. Here, we report the X‐ray crystal structure of the N‐terminal ligand‐binding domain of SgrA (rSgrA28–153) to a resolution of 1.79 Å. The structure revealed a new protein fold with significant differences from previously characterized DEv‐IgG‐ and inv‐IgG‐like folds of adhesive proteins known as microbial surface components recognizing adhesive matrix molecules. The structure contains a Lys–Asn–Glu triad with the potential to form a Lys–Asn isopeptide bond. However, even in the absence of a stabilizing intramolecular isopeptide bond, rSgrA28–153 exhibits remarkable properties like resistance to proteases and high thermal stability. The interaction of rSgrA28–153 with fibrinogen, nidogen, laminin, and abiotic surfaces has been characterized and rSgrA28–153 binds to these molecules with high affinity. rSgrA28–153 also binds to the beta chain of fibrinogen and with high affinity and specificity. Strikingly, the presence of 29 surface‐exposed hydrophobic amino acid residues likely play an important role in the selectivity of rSgrA28–153 to bind to different abiotic surfaces. The results obtained from this study have opened new avenues to explore and understand the role of this unique surface adhesin in the pathogenesis of catheter‐related infections. PDB accession code The coordinates and structure factors for rSgrA28–153 have been deposited with the accession code 5FCE. SgrA is a surface protein of Enterococcus faecium implicated in binding to fibrinogen, nidogen, and abiotic surfaces. Here, we report the crystal structure of the ligand‐binding domain of SgrA (rSgrA28–153). The structure revealed a new protein fold and contains a putative isopeptide bond. Even in the absence of isopeptide bond, rSgrA28–153 is resistant to proteases and exhibits high thermal stability. The surface‐exposed hydrophobic patches likely play a significant role in the adhesion of SgrA toward abiotic surfaces, and this structural information could be useful to understand the role of SgrA in biofilm formation
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A.</au><au>Ponnuraj, Karthe</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The crystal structure of the ligand‐binding region of serine‐glutamate repeat containing protein A (SgrA) of Enterococcus faecium reveals a new protein fold: functional characterization and insights into its adhesion function</atitle><jtitle>The FEBS journal</jtitle><addtitle>FEBS J</addtitle><date>2016-08</date><risdate>2016</risdate><volume>283</volume><issue>16</issue><spage>3039</spage><epage>3055</epage><pages>3039-3055</pages><issn>1742-464X</issn><eissn>1742-4658</eissn><abstract>Antimicrobial‐resistant and hospital‐adapted Enterococcus faecium represents a clinical problem in immunocompromised patients in hospitals worldwide. Understanding the molecular pathogenesis of E. faecium infections may provide novel therapies to treat or prevent infections. A potential target for novel treatment therapies is the serine‐glutamate repeat containing protein A (SgrA), which is a cell wall‐anchored LPxTG surface protein implicated in binding to fibrinogen and nidogen. Here, we report the X‐ray crystal structure of the N‐terminal ligand‐binding domain of SgrA (rSgrA28–153) to a resolution of 1.79 Å. The structure revealed a new protein fold with significant differences from previously characterized DEv‐IgG‐ and inv‐IgG‐like folds of adhesive proteins known as microbial surface components recognizing adhesive matrix molecules. The structure contains a Lys–Asn–Glu triad with the potential to form a Lys–Asn isopeptide bond. However, even in the absence of a stabilizing intramolecular isopeptide bond, rSgrA28–153 exhibits remarkable properties like resistance to proteases and high thermal stability. The interaction of rSgrA28–153 with fibrinogen, nidogen, laminin, and abiotic surfaces has been characterized and rSgrA28–153 binds to these molecules with high affinity. rSgrA28–153 also binds to the beta chain of fibrinogen and with high affinity and specificity. Strikingly, the presence of 29 surface‐exposed hydrophobic amino acid residues likely play an important role in the selectivity of rSgrA28–153 to bind to different abiotic surfaces. The results obtained from this study have opened new avenues to explore and understand the role of this unique surface adhesin in the pathogenesis of catheter‐related infections. PDB accession code The coordinates and structure factors for rSgrA28–153 have been deposited with the accession code 5FCE. SgrA is a surface protein of Enterococcus faecium implicated in binding to fibrinogen, nidogen, and abiotic surfaces. Here, we report the crystal structure of the ligand‐binding domain of SgrA (rSgrA28–153). The structure revealed a new protein fold and contains a putative isopeptide bond. Even in the absence of isopeptide bond, rSgrA28–153 is resistant to proteases and exhibits high thermal stability. The surface‐exposed hydrophobic patches likely play a significant role in the adhesion of SgrA toward abiotic surfaces, and this structural information could be useful to understand the role of SgrA in biofilm formation.</abstract><cop>England</cop><pub>Blackwell Publishing Ltd</pub><pmid>27334767</pmid><doi>10.1111/febs.13792</doi><tpages>17</tpages><oa>free_for_read</oa></addata></record>
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subjects Amino acids
Bacterial Adhesion
Bacterial Proteins - chemistry
Bacterial Proteins - metabolism
Binding Sites
biofilm
cell wall‐anchored LPxTG
Crystal structure
Crystallography, X-Ray
Enterococcus faecium
Enterococcus faecium - physiology
fibrinogen
Fibrinogen - metabolism
Humans
hydrophobic
Immunoglobulin G - chemistry
intramolecular isopeptide bond
laminin
Laminin - metabolism
Ligands
Membrane Glycoproteins - metabolism
Models, Molecular
Neurotransmitters
nidogen
protease resistant
Protein Domains
Protein Folding
Protein Stability
Proteins
Proteolysis
Repetitive Sequences, Amino Acid
Sequence Homology, Amino Acid
Tryptophan - chemistry
title The crystal structure of the ligand‐binding region of serine‐glutamate repeat containing protein A (SgrA) of Enterococcus faecium reveals a new protein fold: functional characterization and insights into its adhesion function
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