Paradonghicola geojensis gen. nov., sp. nov., isolated from seawater, Geoje-si, South Korea
A Gram-negative, non-motile, non-spore-forming and aerobic bacterium, designated FJ12 T , was isolated from seawater, Geoje-si, South Korea. Strain FJ12 T was catalase and oxidase positive. Growth of strain FJ12 T was optimally observed at 30 °C and pH 6 and grew in the presence of 0–11 % (w/v) NaCl...
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| Veröffentlicht in: | Archives of microbiology 2016-08, Vol.198 (6), p.501-507 |
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| creator | Lee, Kalam Srinivasan, Sathiyaraj Lee, Sang-Seob |
| description | A Gram-negative, non-motile, non-spore-forming and aerobic bacterium, designated FJ12
T
, was isolated from seawater, Geoje-si, South Korea. Strain FJ12
T
was catalase and oxidase positive. Growth of strain FJ12
T
was optimally observed at 30 °C and pH 6 and grew in the presence of 0–11 % (w/v) NaCl (optimum 2–3 % NaCl). The phylogenic analysis based on 16S rRNA gene sequence of strains FJ12
T
showed the highest sequence similarity to those of
Doghicola eburneus
KCTC 12735
T
(95.4 %),
Aestuariihabitans beolgyonensis
KTCT 32324
T
(95.3 %),
Sulfitobacter pontiacus
KCTC 32185
T
(94.9 %),
Roseisalinus antarcticus
DSM 11466
T
(94.8 %) and
Loktanella soesokkaensis
KCTC 32425
T
(94.7 %). The major polar lipids of FJ12
T
were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, an unidentified aminolipid and unidentified lipids. It contained Q-10 as the predominant ubiquinone, and major fatty acid is C
18:1
ω
7c (51.7 %), C
16:0
(24.0 %). The DNA G+C content of the strain FJ12
T
was 60 mol%. Based on physiological and chemotaxonomic characteristics, strain FJ12
T
should be regarded as the type species of a novel genus in the family
Rhodobacteraceae
for which the name
Paradonghicola geojensis
sp. nov. is proposed. The type strain FJ12
T
(=KEMB 3001-336
T
=JCM 30384
T
). |
| doi_str_mv | 10.1007/s00203-015-1182-4 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1808737724</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1808737724</sourcerecordid><originalsourceid>FETCH-LOGICAL-c405t-e8ca54b75015ca0afb4af8e70005f844ab6f89d14e52b10c3282c1cffd11eafb3</originalsourceid><addsrcrecordid>eNqNkUFrGzEQhUVoSJw0P6CXspBLD5YzI2kt7bGY1CkNJJAUAjkIrVZy1tgrV_K25N9Hi-NQCoGeZgZ980aPR8gnhAkCyIsEwIBTwJIiKkbFARmh4IyCZA8fyAg4MKoqzo_JSUpLAGRKqSNyzKaVRM7FiDzemmia0C2eWhtWpli4sHRdalPuuknRhd-TcZE2-65NGdq6pvAxrIvkzJ88xXExH9ZoasfFXei3T8WPEJ35SA69WSV39lpPyc9vl_ezK3p9M_8--3pNrYByS52yphS1LLMPa8D4WhivnASA0ishTD31qmpQuJLVCJYzxSxa7xtEl2l-Sr7sdDcx_Opd2up1m6xbrUznQp80KlCSS8nE_6AoWDWVkNHzf9Bl6GOXjQwUVDjlXGYKd5SNIaXovN7Edm3is0bQQ0h6F5LO5vQQkh4-8flVua_Xrnnb2KeSAbYDUn7qFi7-dfpd1Regcppl</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1800916337</pqid></control><display><type>article</type><title>Paradonghicola geojensis gen. nov., sp. nov., isolated from seawater, Geoje-si, South Korea</title><source>MEDLINE</source><source>SpringerLink Journals</source><creator>Lee, Kalam ; Srinivasan, Sathiyaraj ; Lee, Sang-Seob</creator><creatorcontrib>Lee, Kalam ; Srinivasan, Sathiyaraj ; Lee, Sang-Seob</creatorcontrib><description>A Gram-negative, non-motile, non-spore-forming and aerobic bacterium, designated FJ12
T
, was isolated from seawater, Geoje-si, South Korea. Strain FJ12
T
was catalase and oxidase positive. Growth of strain FJ12
T
was optimally observed at 30 °C and pH 6 and grew in the presence of 0–11 % (w/v) NaCl (optimum 2–3 % NaCl). The phylogenic analysis based on 16S rRNA gene sequence of strains FJ12
T
showed the highest sequence similarity to those of
Doghicola eburneus
KCTC 12735
T
(95.4 %),
Aestuariihabitans beolgyonensis
KTCT 32324
T
(95.3 %),
Sulfitobacter pontiacus
KCTC 32185
T
(94.9 %),
Roseisalinus antarcticus
DSM 11466
T
(94.8 %) and
Loktanella soesokkaensis
KCTC 32425
T
(94.7 %). The major polar lipids of FJ12
T
were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, an unidentified aminolipid and unidentified lipids. It contained Q-10 as the predominant ubiquinone, and major fatty acid is C
18:1
ω
7c (51.7 %), C
16:0
(24.0 %). The DNA G+C content of the strain FJ12
T
was 60 mol%. Based on physiological and chemotaxonomic characteristics, strain FJ12
T
should be regarded as the type species of a novel genus in the family
Rhodobacteraceae
for which the name
Paradonghicola geojensis
sp. nov. is proposed. The type strain FJ12
T
(=KEMB 3001-336
T
=JCM 30384
T
).</description><identifier>ISSN: 0302-8933</identifier><identifier>EISSN: 1432-072X</identifier><identifier>DOI: 10.1007/s00203-015-1182-4</identifier><identifier>PMID: 26971334</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Base Composition ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Cell Biology ; Chemical analysis ; DNA, Bacterial - genetics ; Ecology ; Fatty Acids - analysis ; Life Sciences ; Lipids ; Microbial Ecology ; Microbiology ; Microorganisms ; Molecular Typing ; Original Paper ; Phosphatidylethanolamines - analysis ; Phosphatidylglycerols - analysis ; Phylogeny ; Physiology ; Republic of Korea ; Rhodobacteraceae - classification ; Rhodobacteraceae - genetics ; Rhodobacteraceae - isolation & purification ; RNA, Ribosomal, 16S - genetics ; Seawater ; Seawater - microbiology ; Sequence Analysis, DNA ; Sodium chloride ; Sulfitobacter pontiacus ; Ubiquinone - analysis ; Water analysis</subject><ispartof>Archives of microbiology, 2016-08, Vol.198 (6), p.501-507</ispartof><rights>Springer-Verlag Berlin Heidelberg 2016</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c405t-e8ca54b75015ca0afb4af8e70005f844ab6f89d14e52b10c3282c1cffd11eafb3</citedby><cites>FETCH-LOGICAL-c405t-e8ca54b75015ca0afb4af8e70005f844ab6f89d14e52b10c3282c1cffd11eafb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00203-015-1182-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00203-015-1182-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26971334$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lee, Kalam</creatorcontrib><creatorcontrib>Srinivasan, Sathiyaraj</creatorcontrib><creatorcontrib>Lee, Sang-Seob</creatorcontrib><title>Paradonghicola geojensis gen. nov., sp. nov., isolated from seawater, Geoje-si, South Korea</title><title>Archives of microbiology</title><addtitle>Arch Microbiol</addtitle><addtitle>Arch Microbiol</addtitle><description>A Gram-negative, non-motile, non-spore-forming and aerobic bacterium, designated FJ12
T
, was isolated from seawater, Geoje-si, South Korea. Strain FJ12
T
was catalase and oxidase positive. Growth of strain FJ12
T
was optimally observed at 30 °C and pH 6 and grew in the presence of 0–11 % (w/v) NaCl (optimum 2–3 % NaCl). The phylogenic analysis based on 16S rRNA gene sequence of strains FJ12
T
showed the highest sequence similarity to those of
Doghicola eburneus
KCTC 12735
T
(95.4 %),
Aestuariihabitans beolgyonensis
KTCT 32324
T
(95.3 %),
Sulfitobacter pontiacus
KCTC 32185
T
(94.9 %),
Roseisalinus antarcticus
DSM 11466
T
(94.8 %) and
Loktanella soesokkaensis
KCTC 32425
T
(94.7 %). The major polar lipids of FJ12
T
were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, an unidentified aminolipid and unidentified lipids. It contained Q-10 as the predominant ubiquinone, and major fatty acid is C
18:1
ω
7c (51.7 %), C
16:0
(24.0 %). The DNA G+C content of the strain FJ12
T
was 60 mol%. Based on physiological and chemotaxonomic characteristics, strain FJ12
T
should be regarded as the type species of a novel genus in the family
Rhodobacteraceae
for which the name
Paradonghicola geojensis
sp. nov. is proposed. The type strain FJ12
T
(=KEMB 3001-336
T
=JCM 30384
T
).</description><subject>Base Composition</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Cell Biology</subject><subject>Chemical analysis</subject><subject>DNA, Bacterial - genetics</subject><subject>Ecology</subject><subject>Fatty Acids - analysis</subject><subject>Life Sciences</subject><subject>Lipids</subject><subject>Microbial Ecology</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Molecular Typing</subject><subject>Original Paper</subject><subject>Phosphatidylethanolamines - analysis</subject><subject>Phosphatidylglycerols - analysis</subject><subject>Phylogeny</subject><subject>Physiology</subject><subject>Republic of Korea</subject><subject>Rhodobacteraceae - classification</subject><subject>Rhodobacteraceae - genetics</subject><subject>Rhodobacteraceae - isolation & purification</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Seawater</subject><subject>Seawater - microbiology</subject><subject>Sequence Analysis, DNA</subject><subject>Sodium chloride</subject><subject>Sulfitobacter pontiacus</subject><subject>Ubiquinone - analysis</subject><subject>Water analysis</subject><issn>0302-8933</issn><issn>1432-072X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkUFrGzEQhUVoSJw0P6CXspBLD5YzI2kt7bGY1CkNJJAUAjkIrVZy1tgrV_K25N9Hi-NQCoGeZgZ980aPR8gnhAkCyIsEwIBTwJIiKkbFARmh4IyCZA8fyAg4MKoqzo_JSUpLAGRKqSNyzKaVRM7FiDzemmia0C2eWhtWpli4sHRdalPuuknRhd-TcZE2-65NGdq6pvAxrIvkzJ88xXExH9ZoasfFXei3T8WPEJ35SA69WSV39lpPyc9vl_ezK3p9M_8--3pNrYByS52yphS1LLMPa8D4WhivnASA0ishTD31qmpQuJLVCJYzxSxa7xtEl2l-Sr7sdDcx_Opd2up1m6xbrUznQp80KlCSS8nE_6AoWDWVkNHzf9Bl6GOXjQwUVDjlXGYKd5SNIaXovN7Edm3is0bQQ0h6F5LO5vQQkh4-8flVua_Xrnnb2KeSAbYDUn7qFi7-dfpd1Regcppl</recordid><startdate>20160801</startdate><enddate>20160801</enddate><creator>Lee, Kalam</creator><creator>Srinivasan, Sathiyaraj</creator><creator>Lee, Sang-Seob</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20160801</creationdate><title>Paradonghicola geojensis gen. nov., sp. nov., isolated from seawater, Geoje-si, South Korea</title><author>Lee, Kalam ; Srinivasan, Sathiyaraj ; Lee, Sang-Seob</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c405t-e8ca54b75015ca0afb4af8e70005f844ab6f89d14e52b10c3282c1cffd11eafb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Base Composition</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Cell Biology</topic><topic>Chemical analysis</topic><topic>DNA, Bacterial - genetics</topic><topic>Ecology</topic><topic>Fatty Acids - analysis</topic><topic>Life Sciences</topic><topic>Lipids</topic><topic>Microbial Ecology</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Molecular Typing</topic><topic>Original Paper</topic><topic>Phosphatidylethanolamines - analysis</topic><topic>Phosphatidylglycerols - analysis</topic><topic>Phylogeny</topic><topic>Physiology</topic><topic>Republic of Korea</topic><topic>Rhodobacteraceae - classification</topic><topic>Rhodobacteraceae - genetics</topic><topic>Rhodobacteraceae - isolation & purification</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Seawater</topic><topic>Seawater - microbiology</topic><topic>Sequence Analysis, DNA</topic><topic>Sodium chloride</topic><topic>Sulfitobacter pontiacus</topic><topic>Ubiquinone - analysis</topic><topic>Water analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lee, Kalam</creatorcontrib><creatorcontrib>Srinivasan, Sathiyaraj</creatorcontrib><creatorcontrib>Lee, Sang-Seob</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lee, Kalam</au><au>Srinivasan, Sathiyaraj</au><au>Lee, Sang-Seob</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Paradonghicola geojensis gen. nov., sp. nov., isolated from seawater, Geoje-si, South Korea</atitle><jtitle>Archives of microbiology</jtitle><stitle>Arch Microbiol</stitle><addtitle>Arch Microbiol</addtitle><date>2016-08-01</date><risdate>2016</risdate><volume>198</volume><issue>6</issue><spage>501</spage><epage>507</epage><pages>501-507</pages><issn>0302-8933</issn><eissn>1432-072X</eissn><abstract>A Gram-negative, non-motile, non-spore-forming and aerobic bacterium, designated FJ12
T
, was isolated from seawater, Geoje-si, South Korea. Strain FJ12
T
was catalase and oxidase positive. Growth of strain FJ12
T
was optimally observed at 30 °C and pH 6 and grew in the presence of 0–11 % (w/v) NaCl (optimum 2–3 % NaCl). The phylogenic analysis based on 16S rRNA gene sequence of strains FJ12
T
showed the highest sequence similarity to those of
Doghicola eburneus
KCTC 12735
T
(95.4 %),
Aestuariihabitans beolgyonensis
KTCT 32324
T
(95.3 %),
Sulfitobacter pontiacus
KCTC 32185
T
(94.9 %),
Roseisalinus antarcticus
DSM 11466
T
(94.8 %) and
Loktanella soesokkaensis
KCTC 32425
T
(94.7 %). The major polar lipids of FJ12
T
were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, an unidentified aminolipid and unidentified lipids. It contained Q-10 as the predominant ubiquinone, and major fatty acid is C
18:1
ω
7c (51.7 %), C
16:0
(24.0 %). The DNA G+C content of the strain FJ12
T
was 60 mol%. Based on physiological and chemotaxonomic characteristics, strain FJ12
T
should be regarded as the type species of a novel genus in the family
Rhodobacteraceae
for which the name
Paradonghicola geojensis
sp. nov. is proposed. The type strain FJ12
T
(=KEMB 3001-336
T
=JCM 30384
T
).</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>26971334</pmid><doi>10.1007/s00203-015-1182-4</doi><tpages>7</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0302-8933 |
| ispartof | Archives of microbiology, 2016-08, Vol.198 (6), p.501-507 |
| issn | 0302-8933 1432-072X |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1808737724 |
| source | MEDLINE; SpringerLink Journals |
| subjects | Base Composition Biochemistry Biomedical and Life Sciences Biotechnology Cell Biology Chemical analysis DNA, Bacterial - genetics Ecology Fatty Acids - analysis Life Sciences Lipids Microbial Ecology Microbiology Microorganisms Molecular Typing Original Paper Phosphatidylethanolamines - analysis Phosphatidylglycerols - analysis Phylogeny Physiology Republic of Korea Rhodobacteraceae - classification Rhodobacteraceae - genetics Rhodobacteraceae - isolation & purification RNA, Ribosomal, 16S - genetics Seawater Seawater - microbiology Sequence Analysis, DNA Sodium chloride Sulfitobacter pontiacus Ubiquinone - analysis Water analysis |
| title | Paradonghicola geojensis gen. nov., sp. nov., isolated from seawater, Geoje-si, South Korea |
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