Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae
Intestinal microbiota are characterized by host‐specific microorganisms, which have been selected through host‐microbe interactions under phylogenetic evolution and transition of feeding behavior by the host. Although many studies have focused on disease‐related intestinal microbiota, the origin and...
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| Veröffentlicht in: | Animal science journal 2016-06, Vol.87 (6), p.835-841 |
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| creator | Ushida, Kazunari Tsuchida, Sayaka Ogura, Yoshitoshi Toyoda, Atsushi Maruyama, Fumito |
| description | Intestinal microbiota are characterized by host‐specific microorganisms, which have been selected through host‐microbe interactions under phylogenetic evolution and transition of feeding behavior by the host. Although many studies have focused on disease‐related intestinal microbiota, the origin and evolution of host‐specific intestinal microbiota have not been well elucidated. Pig is the ideal mammal model to reveal the origin and evolution of host‐specific intestinal microbiota because their direct wild ancestor and close phylogenetic neighbors are available for comparison. The pig has been recognized as a Lactobacillus‐type animal. We analyzed the intestinal microbiota of various animals in Suidae: domestic pigs, wild boars and Red river hogs to survey the origin and evolution of Lactobacillus‐dominated intestinal microbiota by metagenomic approach and following quantitative PCR confirmation. The metagenomic datasets were separated in two clusters; the wild animal cluster being characterized by a high abundance of Bifidobacterium, whereas the domesticated (or captured) animal cluster by Lactobacillus. In addition, Enterobacteriaceae were harbored as the major family only in domestic Sus scrofa. We conclude that domestication may have induced a larger Enterobacteriaceae population in pigs, and the introduction of modern feeding system further caused the development of Lactobacillus‐dominated intestinal microbiota, with genetic and geographical factors possibly having a minor impact. |
| doi_str_mv | 10.1111/asj.12492 |
| format | Article |
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Although many studies have focused on disease‐related intestinal microbiota, the origin and evolution of host‐specific intestinal microbiota have not been well elucidated. Pig is the ideal mammal model to reveal the origin and evolution of host‐specific intestinal microbiota because their direct wild ancestor and close phylogenetic neighbors are available for comparison. The pig has been recognized as a Lactobacillus‐type animal. We analyzed the intestinal microbiota of various animals in Suidae: domestic pigs, wild boars and Red river hogs to survey the origin and evolution of Lactobacillus‐dominated intestinal microbiota by metagenomic approach and following quantitative PCR confirmation. The metagenomic datasets were separated in two clusters; the wild animal cluster being characterized by a high abundance of Bifidobacterium, whereas the domesticated (or captured) animal cluster by Lactobacillus. 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In addition, Enterobacteriaceae were harbored as the major family only in domestic Sus scrofa. 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Tsuchida, Sayaka ; Ogura, Yoshitoshi ; Toyoda, Atsushi ; Maruyama, Fumito</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4842-ec1cba3bf8dc767af8e76050f4f2153383766424316ca1dcb52f9d2582a42a323</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Animal Feed</topic><topic>Animals</topic><topic>Animals, Domestic - microbiology</topic><topic>Animals, Wild - microbiology</topic><topic>Bifidobacterium</topic><topic>Bifidobacterium - genetics</topic><topic>Datasets as Topic</topic><topic>Digestive system</topic><topic>Domestication</topic><topic>Edible Grain</topic><topic>Enterobacteriaceae</topic><topic>Enterobacteriaceae - genetics</topic><topic>Evolution, Molecular</topic><topic>Feeds</topic><topic>Female</topic><topic>Gastrointestinal Microbiome - genetics</topic><topic>Hogs</topic><topic>intestinal microbiota</topic><topic>Intestines - microbiology</topic><topic>Lactobacillus</topic><topic>Lactobacillus - genetics</topic><topic>Male</topic><topic>Metagenome</topic><topic>origin and evolution</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Suidae</topic><topic>Sus scrofa</topic><topic>Swine - microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ushida, Kazunari</creatorcontrib><creatorcontrib>Tsuchida, Sayaka</creatorcontrib><creatorcontrib>Ogura, Yoshitoshi</creatorcontrib><creatorcontrib>Toyoda, Atsushi</creatorcontrib><creatorcontrib>Maruyama, Fumito</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Neurosciences Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Animal science journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ushida, Kazunari</au><au>Tsuchida, Sayaka</au><au>Ogura, Yoshitoshi</au><au>Toyoda, Atsushi</au><au>Maruyama, Fumito</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae</atitle><jtitle>Animal science journal</jtitle><addtitle>Anim Sci J</addtitle><date>2016-06</date><risdate>2016</risdate><volume>87</volume><issue>6</issue><spage>835</spage><epage>841</epage><pages>835-841</pages><issn>1344-3941</issn><eissn>1740-0929</eissn><abstract>Intestinal microbiota are characterized by host‐specific microorganisms, which have been selected through host‐microbe interactions under phylogenetic evolution and transition of feeding behavior by the host. Although many studies have focused on disease‐related intestinal microbiota, the origin and evolution of host‐specific intestinal microbiota have not been well elucidated. Pig is the ideal mammal model to reveal the origin and evolution of host‐specific intestinal microbiota because their direct wild ancestor and close phylogenetic neighbors are available for comparison. The pig has been recognized as a Lactobacillus‐type animal. We analyzed the intestinal microbiota of various animals in Suidae: domestic pigs, wild boars and Red river hogs to survey the origin and evolution of Lactobacillus‐dominated intestinal microbiota by metagenomic approach and following quantitative PCR confirmation. The metagenomic datasets were separated in two clusters; the wild animal cluster being characterized by a high abundance of Bifidobacterium, whereas the domesticated (or captured) animal cluster by Lactobacillus. 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| subjects | Animal Feed Animals Animals, Domestic - microbiology Animals, Wild - microbiology Bifidobacterium Bifidobacterium - genetics Datasets as Topic Digestive system Domestication Edible Grain Enterobacteriaceae Enterobacteriaceae - genetics Evolution, Molecular Feeds Female Gastrointestinal Microbiome - genetics Hogs intestinal microbiota Intestines - microbiology Lactobacillus Lactobacillus - genetics Male Metagenome origin and evolution Phylogenetics Phylogeny Suidae Sus scrofa Swine - microbiology |
| title | Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae |
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