Streptomyces burgazadensis sp. nov., isolated from soil
A novel actinobacterial strain, designated Z1R7 ᵀ, was isolated from a soil sample collected from Burgazada, in the Marmara Sea (Turkey), and the strain identity was determined using a polyphasic taxonomic approach. The organism had chemotaxonomic and morphological properties consistent with its cla...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2014-12, Vol.64 (Pt 12), p.4043-4048 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Saricaoglu, Salih Isik, Kamil Veyisoglu, Aysel Saygin, Hayrettin Cetin, Demet Guven, Kiymet Spröer, Cathrin Klenk, Hans-Peter Sahin, Nevzat |
| description | A novel actinobacterial strain, designated Z1R7 ᵀ, was isolated from a soil sample collected from Burgazada, in the Marmara Sea (Turkey), and the strain identity was determined using a polyphasic taxonomic approach. The organism had chemotaxonomic and morphological properties consistent with its classification in the genus Streptomyces and it formed a distinct phyletic line in the 16S rRNA gene tree, together with the type strains Streptomyces specialis GW41-1564 ᵀ (95.76 %), Streptomyces mayteni YIM 60475 ᵀ (95.64 %), Streptomyces hainanensis YIM 47672 ᵀ (95.53 %), Streptomyces hoynatensis S1412 ᵀ (95.29 %), Streptomyces avicenniae MCCC 1A01535 ᵀ (94.74 %), Streptomyces sedi YIM 65188 ᵀ (94.59 %) and Streptomyces zhaozhouensis NEAU-LZS-5 ᵀ (94.68 %). Chomotaxonomic data revealed that strain Z1R7 ᵀ possesed MK-9 (H ₈) as the predominant menaquinone, ll -diaminopimelic acid as the diagnostic diamino acid, and galactose, glucose and ribose as whole cell sugars. Diphosphatidylglycerol, phoshphatidylethanolamine and phosphatidylinositol were the predominant polar lipids; iso-C ₁₆ : ₀, anteiso-C ₁₇ : ₀ and anteiso-C ₁₅ : ₀ were the major fatty acids, and the genomic DNA G+C content was 69.4 mol%. On the basis of these genotypic and phenotypic data, it is proposed that isolate Z1R7 ᵀ (= KCTC 29434 ᵀ = DSM 42126 ᵀ) should be classified in the genus Streptomyces as Streptomyces burgazadensis sp. nov. |
| doi_str_mv | 10.1099/ijs.0.065870-0 |
| format | Article |
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The organism had chemotaxonomic and morphological properties consistent with its classification in the genus Streptomyces and it formed a distinct phyletic line in the 16S rRNA gene tree, together with the type strains Streptomyces specialis GW41-1564 ᵀ (95.76 %), Streptomyces mayteni YIM 60475 ᵀ (95.64 %), Streptomyces hainanensis YIM 47672 ᵀ (95.53 %), Streptomyces hoynatensis S1412 ᵀ (95.29 %), Streptomyces avicenniae MCCC 1A01535 ᵀ (94.74 %), Streptomyces sedi YIM 65188 ᵀ (94.59 %) and Streptomyces zhaozhouensis NEAU-LZS-5 ᵀ (94.68 %). Chomotaxonomic data revealed that strain Z1R7 ᵀ possesed MK-9 (H ₈) as the predominant menaquinone, ll -diaminopimelic acid as the diagnostic diamino acid, and galactose, glucose and ribose as whole cell sugars. Diphosphatidylglycerol, phoshphatidylethanolamine and phosphatidylinositol were the predominant polar lipids; iso-C ₁₆ : ₀, anteiso-C ₁₇ : ₀ and anteiso-C ₁₅ : ₀ were the major fatty acids, and the genomic DNA G+C content was 69.4 mol%. On the basis of these genotypic and phenotypic data, it is proposed that isolate Z1R7 ᵀ (= KCTC 29434 ᵀ = DSM 42126 ᵀ) should be classified in the genus Streptomyces as Streptomyces burgazadensis sp. nov.</description><identifier>ISSN: 1466-5034</identifier><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.065870-0</identifier><identifier>PMID: 25237147</identifier><language>eng</language><publisher>England: International Union of Microbiological Societies</publisher><subject>Bacterial Typing Techniques ; Base Composition ; chemotaxonomy ; Diaminopimelic Acid - chemistry ; DNA ; DNA, Bacterial - genetics ; fatty acids ; Fatty Acids - chemistry ; galactose ; glucose ; menaquinones ; microbiology ; Molecular Sequence Data ; Phylogeny ; ribose ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; soil ; Soil Microbiology ; Streptomyces ; Streptomyces - classification ; Streptomyces - genetics ; Streptomyces - isolation & purification ; Turkey ; Vitamin K 2 - analogs & derivatives ; Vitamin K 2 - chemistry</subject><ispartof>International journal of systematic and evolutionary microbiology, 2014-12, Vol.64 (Pt 12), p.4043-4048</ispartof><rights>2014 IUMS.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c392t-aacc065782ab9da868532ef5242f735bcdab01b96932d31f52241a592b23e05c3</citedby><cites>FETCH-LOGICAL-c392t-aacc065782ab9da868532ef5242f735bcdab01b96932d31f52241a592b23e05c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25237147$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Saricaoglu, Salih</creatorcontrib><creatorcontrib>Isik, Kamil</creatorcontrib><creatorcontrib>Veyisoglu, Aysel</creatorcontrib><creatorcontrib>Saygin, Hayrettin</creatorcontrib><creatorcontrib>Cetin, Demet</creatorcontrib><creatorcontrib>Guven, Kiymet</creatorcontrib><creatorcontrib>Spröer, Cathrin</creatorcontrib><creatorcontrib>Klenk, Hans-Peter</creatorcontrib><creatorcontrib>Sahin, Nevzat</creatorcontrib><title>Streptomyces burgazadensis sp. nov., isolated from soil</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A novel actinobacterial strain, designated Z1R7 ᵀ, was isolated from a soil sample collected from Burgazada, in the Marmara Sea (Turkey), and the strain identity was determined using a polyphasic taxonomic approach. The organism had chemotaxonomic and morphological properties consistent with its classification in the genus Streptomyces and it formed a distinct phyletic line in the 16S rRNA gene tree, together with the type strains Streptomyces specialis GW41-1564 ᵀ (95.76 %), Streptomyces mayteni YIM 60475 ᵀ (95.64 %), Streptomyces hainanensis YIM 47672 ᵀ (95.53 %), Streptomyces hoynatensis S1412 ᵀ (95.29 %), Streptomyces avicenniae MCCC 1A01535 ᵀ (94.74 %), Streptomyces sedi YIM 65188 ᵀ (94.59 %) and Streptomyces zhaozhouensis NEAU-LZS-5 ᵀ (94.68 %). Chomotaxonomic data revealed that strain Z1R7 ᵀ possesed MK-9 (H ₈) as the predominant menaquinone, ll -diaminopimelic acid as the diagnostic diamino acid, and galactose, glucose and ribose as whole cell sugars. Diphosphatidylglycerol, phoshphatidylethanolamine and phosphatidylinositol were the predominant polar lipids; iso-C ₁₆ : ₀, anteiso-C ₁₇ : ₀ and anteiso-C ₁₅ : ₀ were the major fatty acids, and the genomic DNA G+C content was 69.4 mol%. On the basis of these genotypic and phenotypic data, it is proposed that isolate Z1R7 ᵀ (= KCTC 29434 ᵀ = DSM 42126 ᵀ) should be classified in the genus Streptomyces as Streptomyces burgazadensis sp. nov.</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>chemotaxonomy</subject><subject>Diaminopimelic Acid - chemistry</subject><subject>DNA</subject><subject>DNA, Bacterial - genetics</subject><subject>fatty acids</subject><subject>Fatty Acids - chemistry</subject><subject>galactose</subject><subject>glucose</subject><subject>menaquinones</subject><subject>microbiology</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>ribose</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>soil</subject><subject>Soil Microbiology</subject><subject>Streptomyces</subject><subject>Streptomyces - classification</subject><subject>Streptomyces - genetics</subject><subject>Streptomyces - isolation & purification</subject><subject>Turkey</subject><subject>Vitamin K 2 - analogs & derivatives</subject><subject>Vitamin K 2 - chemistry</subject><issn>1466-5034</issn><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkE1Lw0AQhhdRbK1ePWqOHkyc_Uz2KMUvKHioPS-bZFNSkm7cSYX6602JijdPM8w88zI8hFxSSChofVdvMIEElMxSiOGITKlQKpbAxfGffkLOEDcAwwDglEyYZDylIp2SdNkH1_W-3RcOo3wX1vbTlm6LNUbYJdHWfyS3UY2-sb0royr4NkJfN-fkpLINuovvOiOrx4e3-XO8eH16md8v4oJr1sfWFsXwXJoxm-vSZiqTnLlKMsGqlMu8KG0ONNdKc1ZyOiyYoFZqljPuQBZ8Rm7G3C74953D3rQ1Fq5p7Nb5HRqaQZYyppX4H1VcAggG2YAmI1oEjxhcZbpQtzbsDQVz8GoGrwbM6NXAcHD1nb3LW1f-4j8iB-B6BCrrjV2HGs1qyYDKg3ShtOJfhth6_g</recordid><startdate>20141201</startdate><enddate>20141201</enddate><creator>Saricaoglu, Salih</creator><creator>Isik, Kamil</creator><creator>Veyisoglu, Aysel</creator><creator>Saygin, Hayrettin</creator><creator>Cetin, Demet</creator><creator>Guven, Kiymet</creator><creator>Spröer, Cathrin</creator><creator>Klenk, Hans-Peter</creator><creator>Sahin, Nevzat</creator><general>International Union of Microbiological Societies</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QL</scope><scope>C1K</scope></search><sort><creationdate>20141201</creationdate><title>Streptomyces burgazadensis sp. nov., isolated from soil</title><author>Saricaoglu, Salih ; Isik, Kamil ; Veyisoglu, Aysel ; Saygin, Hayrettin ; Cetin, Demet ; Guven, Kiymet ; Spröer, Cathrin ; Klenk, Hans-Peter ; Sahin, Nevzat</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c392t-aacc065782ab9da868532ef5242f735bcdab01b96932d31f52241a592b23e05c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>chemotaxonomy</topic><topic>Diaminopimelic Acid - chemistry</topic><topic>DNA</topic><topic>DNA, Bacterial - genetics</topic><topic>fatty acids</topic><topic>Fatty Acids - chemistry</topic><topic>galactose</topic><topic>glucose</topic><topic>menaquinones</topic><topic>microbiology</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>ribose</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>soil</topic><topic>Soil Microbiology</topic><topic>Streptomyces</topic><topic>Streptomyces - classification</topic><topic>Streptomyces - genetics</topic><topic>Streptomyces - isolation & purification</topic><topic>Turkey</topic><topic>Vitamin K 2 - analogs & derivatives</topic><topic>Vitamin K 2 - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Saricaoglu, Salih</creatorcontrib><creatorcontrib>Isik, Kamil</creatorcontrib><creatorcontrib>Veyisoglu, Aysel</creatorcontrib><creatorcontrib>Saygin, Hayrettin</creatorcontrib><creatorcontrib>Cetin, Demet</creatorcontrib><creatorcontrib>Guven, Kiymet</creatorcontrib><creatorcontrib>Spröer, Cathrin</creatorcontrib><creatorcontrib>Klenk, Hans-Peter</creatorcontrib><creatorcontrib>Sahin, Nevzat</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Saricaoglu, Salih</au><au>Isik, Kamil</au><au>Veyisoglu, Aysel</au><au>Saygin, Hayrettin</au><au>Cetin, Demet</au><au>Guven, Kiymet</au><au>Spröer, Cathrin</au><au>Klenk, Hans-Peter</au><au>Sahin, Nevzat</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Streptomyces burgazadensis sp. nov., isolated from soil</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2014-12-01</date><risdate>2014</risdate><volume>64</volume><issue>Pt 12</issue><spage>4043</spage><epage>4048</epage><pages>4043-4048</pages><issn>1466-5034</issn><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A novel actinobacterial strain, designated Z1R7 ᵀ, was isolated from a soil sample collected from Burgazada, in the Marmara Sea (Turkey), and the strain identity was determined using a polyphasic taxonomic approach. The organism had chemotaxonomic and morphological properties consistent with its classification in the genus Streptomyces and it formed a distinct phyletic line in the 16S rRNA gene tree, together with the type strains Streptomyces specialis GW41-1564 ᵀ (95.76 %), Streptomyces mayteni YIM 60475 ᵀ (95.64 %), Streptomyces hainanensis YIM 47672 ᵀ (95.53 %), Streptomyces hoynatensis S1412 ᵀ (95.29 %), Streptomyces avicenniae MCCC 1A01535 ᵀ (94.74 %), Streptomyces sedi YIM 65188 ᵀ (94.59 %) and Streptomyces zhaozhouensis NEAU-LZS-5 ᵀ (94.68 %). Chomotaxonomic data revealed that strain Z1R7 ᵀ possesed MK-9 (H ₈) as the predominant menaquinone, ll -diaminopimelic acid as the diagnostic diamino acid, and galactose, glucose and ribose as whole cell sugars. Diphosphatidylglycerol, phoshphatidylethanolamine and phosphatidylinositol were the predominant polar lipids; iso-C ₁₆ : ₀, anteiso-C ₁₇ : ₀ and anteiso-C ₁₅ : ₀ were the major fatty acids, and the genomic DNA G+C content was 69.4 mol%. On the basis of these genotypic and phenotypic data, it is proposed that isolate Z1R7 ᵀ (= KCTC 29434 ᵀ = DSM 42126 ᵀ) should be classified in the genus Streptomyces as Streptomyces burgazadensis sp. nov.</abstract><cop>England</cop><pub>International Union of Microbiological Societies</pub><pmid>25237147</pmid><doi>10.1099/ijs.0.065870-0</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Bacterial Typing Techniques Base Composition chemotaxonomy Diaminopimelic Acid - chemistry DNA DNA, Bacterial - genetics fatty acids Fatty Acids - chemistry galactose glucose menaquinones microbiology Molecular Sequence Data Phylogeny ribose ribosomal RNA RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA soil Soil Microbiology Streptomyces Streptomyces - classification Streptomyces - genetics Streptomyces - isolation & purification Turkey Vitamin K 2 - analogs & derivatives Vitamin K 2 - chemistry |
| title | Streptomyces burgazadensis sp. nov., isolated from soil |
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