Sphingorhabdus pacificus sp. nov., isolated from sandy sediments of the Sea of Japan seashore
An aerobic, Gram-negative, yellow-pigmented, non-motile rod-shaped bacterium designated KMM 9574ᵀwas isolated from a sand sediment sample collected from the Sea of Japan seashore. Comparative 16S rRNA gene sequence analysis showed that strain KMM 9574ᵀbelonged to the genus Sphingorhabdus sharing a h...
Gespeichert in:
| Veröffentlicht in: | Archives of microbiology 2015-03, Vol.197 (2), p.147-153 |
|---|---|
| Hauptverfasser: | , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 153 |
|---|---|
| container_issue | 2 |
| container_start_page | 147 |
| container_title | Archives of microbiology |
| container_volume | 197 |
| creator | Romanenko, Lyudmila A Tanaka, Naoto Svetashev, Vassilii I Mikhailov, Valery V |
| description | An aerobic, Gram-negative, yellow-pigmented, non-motile rod-shaped bacterium designated KMM 9574ᵀwas isolated from a sand sediment sample collected from the Sea of Japan seashore. Comparative 16S rRNA gene sequence analysis showed that strain KMM 9574ᵀbelonged to the genus Sphingorhabdus sharing a highest sequence similarity to Sphingorhabdus marina JCM 14161ᵀ96.8 %. Strain KMM 9574ᵀwas characterized by the major ubiquinone Q-10, and by the predominance of C₁₈:₁ω7c, C₁₆:₀2-OH, C₁₆:₁ω7c, C₁₇:₁, followed by C₁₅:₀2-OH and C₁₄:₀2-OH in its fatty acid profile. Polar lipids consisted of phosphatidylcholine, sphingoglycolipid, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unknown phospholipid, and an unknown lipid. The DNA G+C content was 56.5 mol %. Based on phylogenetic analysis and distinctive phenotypic characteristics, strain 9574ᵀis concluded to represent a novel species of the genus Sphingorhabdus, for which the name Sphingorhabdus pacificus sp. nov., is proposed. The type strain of the species is strain KMM 9574ᵀ(= NRIC 0922ᵀ = JCM 30177ᵀ). |
| doi_str_mv | 10.1007/s00203-014-1033-8 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1808373498</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1808373498</sourcerecordid><originalsourceid>FETCH-LOGICAL-c424t-4626f2fd904785fceebe36d2410507d7576f02de9f672957d2b5a15383398c413</originalsourceid><addsrcrecordid>eNqFkU1v1DAQhi0EokvhB3ABHzmQZTy2Y_uIqvKlShyWSlyQ5Y3tbtAmDp4sUv89ibZw5TSvNM88h3kZeylgKwDMOwJAkA0I1QiQsrGP2EYoiQ0Y_P6YbUACNtZJecGeEf0EEGitfcouUCMa5_SG_dhNh368K_UQ9vFEfApdn_tuSTRt-Vh-b9_ynsoxzCnyXMvAKYzxnlOK_ZDGmXjJfD4kvkthjV_CFMZlG-hQanrOnuRwpPTiYV6y2w_X364-NTdfP36-en_TdArV3KgW24w5OlDG6tyltE-yjagEaDDRaNNmwJhcbg06bSLudRBaWimd7ZSQl-zN2TvV8uuUaPZDT106HsOYyom8sGClkcrZ_6Ot1qiNE6tVnNGuFqKasp9qP4R67wX4tQB_LsAvBfi1AL_qXz3oT_shxX8Xfz--AK_PQA7Fh7vak7_dIQi9qIS0DuUfCpGIUg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1655257911</pqid></control><display><type>article</type><title>Sphingorhabdus pacificus sp. nov., isolated from sandy sediments of the Sea of Japan seashore</title><source>MEDLINE</source><source>SpringerNature Journals</source><creator>Romanenko, Lyudmila A ; Tanaka, Naoto ; Svetashev, Vassilii I ; Mikhailov, Valery V</creator><creatorcontrib>Romanenko, Lyudmila A ; Tanaka, Naoto ; Svetashev, Vassilii I ; Mikhailov, Valery V</creatorcontrib><description>An aerobic, Gram-negative, yellow-pigmented, non-motile rod-shaped bacterium designated KMM 9574ᵀwas isolated from a sand sediment sample collected from the Sea of Japan seashore. Comparative 16S rRNA gene sequence analysis showed that strain KMM 9574ᵀbelonged to the genus Sphingorhabdus sharing a highest sequence similarity to Sphingorhabdus marina JCM 14161ᵀ96.8 %. Strain KMM 9574ᵀwas characterized by the major ubiquinone Q-10, and by the predominance of C₁₈:₁ω7c, C₁₆:₀2-OH, C₁₆:₁ω7c, C₁₇:₁, followed by C₁₅:₀2-OH and C₁₄:₀2-OH in its fatty acid profile. Polar lipids consisted of phosphatidylcholine, sphingoglycolipid, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unknown phospholipid, and an unknown lipid. The DNA G+C content was 56.5 mol %. Based on phylogenetic analysis and distinctive phenotypic characteristics, strain 9574ᵀis concluded to represent a novel species of the genus Sphingorhabdus, for which the name Sphingorhabdus pacificus sp. nov., is proposed. The type strain of the species is strain KMM 9574ᵀ(= NRIC 0922ᵀ = JCM 30177ᵀ).</description><identifier>ISSN: 0302-8933</identifier><identifier>EISSN: 1432-072X</identifier><identifier>DOI: 10.1007/s00203-014-1033-8</identifier><identifier>PMID: 25227995</identifier><language>eng</language><publisher>Germany: Springer-Verlag</publisher><subject>bacteria ; Base Composition ; DNA ; fatty acid composition ; Fatty Acids - analysis ; Geologic Sediments - microbiology ; Lipids - analysis ; Molecular Sequence Data ; new species ; nucleotide sequences ; Oceans and Seas ; phosphatidylcholines ; phosphatidylethanolamines ; Phospholipids - analysis ; Phylogeny ; ribosomal RNA ; RNA, Ribosomal, 16S - genetics ; Russia ; sand ; sequence homology ; Species Specificity ; Sphingomonadaceae - chemistry ; Sphingomonadaceae - classification ; Sphingomonadaceae - genetics ; Sphingomonadaceae - isolation & purification ; Sphingomonadaceae - physiology ; ubiquinones</subject><ispartof>Archives of microbiology, 2015-03, Vol.197 (2), p.147-153</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c424t-4626f2fd904785fceebe36d2410507d7576f02de9f672957d2b5a15383398c413</citedby><cites>FETCH-LOGICAL-c424t-4626f2fd904785fceebe36d2410507d7576f02de9f672957d2b5a15383398c413</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25227995$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Romanenko, Lyudmila A</creatorcontrib><creatorcontrib>Tanaka, Naoto</creatorcontrib><creatorcontrib>Svetashev, Vassilii I</creatorcontrib><creatorcontrib>Mikhailov, Valery V</creatorcontrib><title>Sphingorhabdus pacificus sp. nov., isolated from sandy sediments of the Sea of Japan seashore</title><title>Archives of microbiology</title><addtitle>Arch Microbiol</addtitle><description>An aerobic, Gram-negative, yellow-pigmented, non-motile rod-shaped bacterium designated KMM 9574ᵀwas isolated from a sand sediment sample collected from the Sea of Japan seashore. Comparative 16S rRNA gene sequence analysis showed that strain KMM 9574ᵀbelonged to the genus Sphingorhabdus sharing a highest sequence similarity to Sphingorhabdus marina JCM 14161ᵀ96.8 %. Strain KMM 9574ᵀwas characterized by the major ubiquinone Q-10, and by the predominance of C₁₈:₁ω7c, C₁₆:₀2-OH, C₁₆:₁ω7c, C₁₇:₁, followed by C₁₅:₀2-OH and C₁₄:₀2-OH in its fatty acid profile. Polar lipids consisted of phosphatidylcholine, sphingoglycolipid, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unknown phospholipid, and an unknown lipid. The DNA G+C content was 56.5 mol %. Based on phylogenetic analysis and distinctive phenotypic characteristics, strain 9574ᵀis concluded to represent a novel species of the genus Sphingorhabdus, for which the name Sphingorhabdus pacificus sp. nov., is proposed. The type strain of the species is strain KMM 9574ᵀ(= NRIC 0922ᵀ = JCM 30177ᵀ).</description><subject>bacteria</subject><subject>Base Composition</subject><subject>DNA</subject><subject>fatty acid composition</subject><subject>Fatty Acids - analysis</subject><subject>Geologic Sediments - microbiology</subject><subject>Lipids - analysis</subject><subject>Molecular Sequence Data</subject><subject>new species</subject><subject>nucleotide sequences</subject><subject>Oceans and Seas</subject><subject>phosphatidylcholines</subject><subject>phosphatidylethanolamines</subject><subject>Phospholipids - analysis</subject><subject>Phylogeny</subject><subject>ribosomal RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Russia</subject><subject>sand</subject><subject>sequence homology</subject><subject>Species Specificity</subject><subject>Sphingomonadaceae - chemistry</subject><subject>Sphingomonadaceae - classification</subject><subject>Sphingomonadaceae - genetics</subject><subject>Sphingomonadaceae - isolation & purification</subject><subject>Sphingomonadaceae - physiology</subject><subject>ubiquinones</subject><issn>0302-8933</issn><issn>1432-072X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1v1DAQhi0EokvhB3ABHzmQZTy2Y_uIqvKlShyWSlyQ5Y3tbtAmDp4sUv89ibZw5TSvNM88h3kZeylgKwDMOwJAkA0I1QiQsrGP2EYoiQ0Y_P6YbUACNtZJecGeEf0EEGitfcouUCMa5_SG_dhNh368K_UQ9vFEfApdn_tuSTRt-Vh-b9_ynsoxzCnyXMvAKYzxnlOK_ZDGmXjJfD4kvkthjV_CFMZlG-hQanrOnuRwpPTiYV6y2w_X364-NTdfP36-en_TdArV3KgW24w5OlDG6tyltE-yjagEaDDRaNNmwJhcbg06bSLudRBaWimd7ZSQl-zN2TvV8uuUaPZDT106HsOYyom8sGClkcrZ_6Ot1qiNE6tVnNGuFqKasp9qP4R67wX4tQB_LsAvBfi1AL_qXz3oT_shxX8Xfz--AK_PQA7Fh7vak7_dIQi9qIS0DuUfCpGIUg</recordid><startdate>20150301</startdate><enddate>20150301</enddate><creator>Romanenko, Lyudmila A</creator><creator>Tanaka, Naoto</creator><creator>Svetashev, Vassilii I</creator><creator>Mikhailov, Valery V</creator><general>Springer-Verlag</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7TN</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope></search><sort><creationdate>20150301</creationdate><title>Sphingorhabdus pacificus sp. nov., isolated from sandy sediments of the Sea of Japan seashore</title><author>Romanenko, Lyudmila A ; Tanaka, Naoto ; Svetashev, Vassilii I ; Mikhailov, Valery V</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c424t-4626f2fd904785fceebe36d2410507d7576f02de9f672957d2b5a15383398c413</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>bacteria</topic><topic>Base Composition</topic><topic>DNA</topic><topic>fatty acid composition</topic><topic>Fatty Acids - analysis</topic><topic>Geologic Sediments - microbiology</topic><topic>Lipids - analysis</topic><topic>Molecular Sequence Data</topic><topic>new species</topic><topic>nucleotide sequences</topic><topic>Oceans and Seas</topic><topic>phosphatidylcholines</topic><topic>phosphatidylethanolamines</topic><topic>Phospholipids - analysis</topic><topic>Phylogeny</topic><topic>ribosomal RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Russia</topic><topic>sand</topic><topic>sequence homology</topic><topic>Species Specificity</topic><topic>Sphingomonadaceae - chemistry</topic><topic>Sphingomonadaceae - classification</topic><topic>Sphingomonadaceae - genetics</topic><topic>Sphingomonadaceae - isolation & purification</topic><topic>Sphingomonadaceae - physiology</topic><topic>ubiquinones</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Romanenko, Lyudmila A</creatorcontrib><creatorcontrib>Tanaka, Naoto</creatorcontrib><creatorcontrib>Svetashev, Vassilii I</creatorcontrib><creatorcontrib>Mikhailov, Valery V</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Oceanic Abstracts</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><jtitle>Archives of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Romanenko, Lyudmila A</au><au>Tanaka, Naoto</au><au>Svetashev, Vassilii I</au><au>Mikhailov, Valery V</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Sphingorhabdus pacificus sp. nov., isolated from sandy sediments of the Sea of Japan seashore</atitle><jtitle>Archives of microbiology</jtitle><addtitle>Arch Microbiol</addtitle><date>2015-03-01</date><risdate>2015</risdate><volume>197</volume><issue>2</issue><spage>147</spage><epage>153</epage><pages>147-153</pages><issn>0302-8933</issn><eissn>1432-072X</eissn><abstract>An aerobic, Gram-negative, yellow-pigmented, non-motile rod-shaped bacterium designated KMM 9574ᵀwas isolated from a sand sediment sample collected from the Sea of Japan seashore. Comparative 16S rRNA gene sequence analysis showed that strain KMM 9574ᵀbelonged to the genus Sphingorhabdus sharing a highest sequence similarity to Sphingorhabdus marina JCM 14161ᵀ96.8 %. Strain KMM 9574ᵀwas characterized by the major ubiquinone Q-10, and by the predominance of C₁₈:₁ω7c, C₁₆:₀2-OH, C₁₆:₁ω7c, C₁₇:₁, followed by C₁₅:₀2-OH and C₁₄:₀2-OH in its fatty acid profile. Polar lipids consisted of phosphatidylcholine, sphingoglycolipid, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unknown phospholipid, and an unknown lipid. The DNA G+C content was 56.5 mol %. Based on phylogenetic analysis and distinctive phenotypic characteristics, strain 9574ᵀis concluded to represent a novel species of the genus Sphingorhabdus, for which the name Sphingorhabdus pacificus sp. nov., is proposed. The type strain of the species is strain KMM 9574ᵀ(= NRIC 0922ᵀ = JCM 30177ᵀ).</abstract><cop>Germany</cop><pub>Springer-Verlag</pub><pmid>25227995</pmid><doi>10.1007/s00203-014-1033-8</doi><tpages>7</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0302-8933 |
| ispartof | Archives of microbiology, 2015-03, Vol.197 (2), p.147-153 |
| issn | 0302-8933 1432-072X |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1808373498 |
| source | MEDLINE; SpringerNature Journals |
| subjects | bacteria Base Composition DNA fatty acid composition Fatty Acids - analysis Geologic Sediments - microbiology Lipids - analysis Molecular Sequence Data new species nucleotide sequences Oceans and Seas phosphatidylcholines phosphatidylethanolamines Phospholipids - analysis Phylogeny ribosomal RNA RNA, Ribosomal, 16S - genetics Russia sand sequence homology Species Specificity Sphingomonadaceae - chemistry Sphingomonadaceae - classification Sphingomonadaceae - genetics Sphingomonadaceae - isolation & purification Sphingomonadaceae - physiology ubiquinones |
| title | Sphingorhabdus pacificus sp. nov., isolated from sandy sediments of the Sea of Japan seashore |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-23T06%3A05%3A43IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Sphingorhabdus%20pacificus%20sp.%20nov.,%20isolated%20from%20sandy%20sediments%20of%20the%20Sea%20of%20Japan%20seashore&rft.jtitle=Archives%20of%20microbiology&rft.au=Romanenko,%20Lyudmila%20A&rft.date=2015-03-01&rft.volume=197&rft.issue=2&rft.spage=147&rft.epage=153&rft.pages=147-153&rft.issn=0302-8933&rft.eissn=1432-072X&rft_id=info:doi/10.1007/s00203-014-1033-8&rft_dat=%3Cproquest_cross%3E1808373498%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1655257911&rft_id=info:pmid/25227995&rfr_iscdi=true |