A novel isolate and widespread abundance of the candidate alphaproteobacterial order (Ellin 329), in southern Appalachian peatlands
Peatlands of all latitudes play an integral role in global climate change by serving as a carbon sink and a primary source of atmospheric methane; however, the microbial ecology of mid-latitude peatlands is vastly understudied. Herein, next generation Illumina amplicon sequencing of small subunit rR...
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description | Peatlands of all latitudes play an integral role in global climate change by serving as a carbon sink and a primary source of atmospheric methane; however, the microbial ecology of mid-latitude peatlands is vastly understudied. Herein, next generation Illumina amplicon sequencing of small subunit rRNA genes was utilized to elucidate the microbial communities in three southern Appalachian peatlands. In contrast to northern peatlands, Proteobacteria dominated over Acidobacteria in all three sites. An average of 11 bacterial phyla was detected at relative abundance values >1%, with three candidate divisions (OP3, WS3 and NC10) represented, indicating high phylogenetic diversity. Physiological traits of isolates within the candidate alphaproteobacterial order, Ellin 329, obtained here and in previous studies indicate that bacteria of this order may be involved in hydrolysis of poly-, di- and monosaccharides. Community analyses indicate that Ellin 329 is the third most abundant order and is most abundant near the surface layers where plant litter decomposition should be primarily occurring. In sum, members of Ellin 329 likely play important roles in organic matter decomposition, in southern Appalachian peatlands and should be investigated further in other peatlands and ecosystem types.
A new order of bacteria, Ellin 329, are abundant in peatlands and may contribute to the decomposition of organic matter and subsequent release of methane to the atmosphere. |
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A new order of bacteria, Ellin 329, are abundant in peatlands and may contribute to the decomposition of organic matter and subsequent release of methane to the atmosphere.</description><identifier>ISSN: 1574-6968</identifier><identifier>ISSN: 0378-1097</identifier><identifier>EISSN: 1574-6968</identifier><identifier>DOI: 10.1093/femsle/fnw151</identifier><identifier>PMID: 27302469</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Abundance ; Alphaproteobacteria - classification ; Alphaproteobacteria - genetics ; Alphaproteobacteria - isolation & purification ; Alphaproteobacteria - metabolism ; Carbon sinks ; Climate change ; Decomposition ; Ecosystem ; Genes, rRNA ; Global climate ; Latitude ; Methane - metabolism ; Microbial activity ; Microbial Consortia ; Microbiology ; Microorganisms ; Monosaccharides ; Organic matter ; Peatlands ; Phylogeny ; Relative abundance ; rRNA ; Soil Microbiology ; Surface layers</subject><ispartof>FEMS microbiology letters, 2016-08, Vol.363 (15), p.fnw151</ispartof><rights>FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com 2016</rights><rights>FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.</rights><rights>FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c529t-faf2a6f11cbdc395a4f569cec4be56409d30a2b9c160b52e5abc7c0da28775d03</citedby><cites>FETCH-LOGICAL-c529t-faf2a6f11cbdc395a4f569cec4be56409d30a2b9c160b52e5abc7c0da28775d03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,1578,27903,27904</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27302469$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Boden, Rich</contributor><creatorcontrib>Harbison, Austin B.</creatorcontrib><creatorcontrib>Carson, Michael A.</creatorcontrib><creatorcontrib>Lamit, Louis J.</creatorcontrib><creatorcontrib>Basiliko, Nathan</creatorcontrib><creatorcontrib>Bräuer, Suzanna L.</creatorcontrib><title>A novel isolate and widespread abundance of the candidate alphaproteobacterial order (Ellin 329), in southern Appalachian peatlands</title><title>FEMS microbiology letters</title><addtitle>FEMS Microbiol Lett</addtitle><description>Peatlands of all latitudes play an integral role in global climate change by serving as a carbon sink and a primary source of atmospheric methane; however, the microbial ecology of mid-latitude peatlands is vastly understudied. Herein, next generation Illumina amplicon sequencing of small subunit rRNA genes was utilized to elucidate the microbial communities in three southern Appalachian peatlands. In contrast to northern peatlands, Proteobacteria dominated over Acidobacteria in all three sites. An average of 11 bacterial phyla was detected at relative abundance values >1%, with three candidate divisions (OP3, WS3 and NC10) represented, indicating high phylogenetic diversity. Physiological traits of isolates within the candidate alphaproteobacterial order, Ellin 329, obtained here and in previous studies indicate that bacteria of this order may be involved in hydrolysis of poly-, di- and monosaccharides. Community analyses indicate that Ellin 329 is the third most abundant order and is most abundant near the surface layers where plant litter decomposition should be primarily occurring. In sum, members of Ellin 329 likely play important roles in organic matter decomposition, in southern Appalachian peatlands and should be investigated further in other peatlands and ecosystem types.
A new order of bacteria, Ellin 329, are abundant in peatlands and may contribute to the decomposition of organic matter and subsequent release of methane to the atmosphere.</description><subject>Abundance</subject><subject>Alphaproteobacteria - classification</subject><subject>Alphaproteobacteria - genetics</subject><subject>Alphaproteobacteria - isolation & purification</subject><subject>Alphaproteobacteria - metabolism</subject><subject>Carbon sinks</subject><subject>Climate change</subject><subject>Decomposition</subject><subject>Ecosystem</subject><subject>Genes, rRNA</subject><subject>Global climate</subject><subject>Latitude</subject><subject>Methane - metabolism</subject><subject>Microbial activity</subject><subject>Microbial Consortia</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Monosaccharides</subject><subject>Organic matter</subject><subject>Peatlands</subject><subject>Phylogeny</subject><subject>Relative abundance</subject><subject>rRNA</subject><subject>Soil Microbiology</subject><subject>Surface layers</subject><issn>1574-6968</issn><issn>0378-1097</issn><issn>1574-6968</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFkT1rHDEQhkVwiD-SMq0RuLHBG0taafdUHsYfAUMap15mpRG3RidtpN0crv3HrfM5iXGTaqZ45uVhXkK-cvaNM11fOFxnjxcubLjiH8gBV62sGt0s9t7s--Qw5wfGmBSs-UT2RVszIRt9QJ6WNMTf6OmQo4cJKQRLN4PFPCYES6Gfg4VgkEZHpxVSU4DBvpB-XMGY4oSxBzNhGsDTmCwmenrl_RBoLfTZOS1LjnO5TYEuxxE8mNUAgY4Iky9p-TP56MBn_PI6j8jP66v7y9vq7sfN98vlXWWU0FPlwAloHOemt6bWCqRTjTZoZI-qkUzbmoHoteEN65VABb1pDbMgFm2rLKuPyOkut0j_mjFP3XrIBn2RwDjnji8Yl0K2aouevEMf4pxCseuErHl5HmdbqtpRJsWcE7puTMMa0mPHWbdtp9u10-3aKfzxa-rcr9H-pf_U8c8wzuN_sp4BvVucBQ</recordid><startdate>20160801</startdate><enddate>20160801</enddate><creator>Harbison, Austin B.</creator><creator>Carson, Michael A.</creator><creator>Lamit, Louis J.</creator><creator>Basiliko, Nathan</creator><creator>Bräuer, Suzanna L.</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20160801</creationdate><title>A novel isolate and widespread abundance of the candidate alphaproteobacterial order (Ellin 329), in southern Appalachian peatlands</title><author>Harbison, Austin B. ; Carson, Michael A. ; Lamit, Louis J. ; Basiliko, Nathan ; Bräuer, Suzanna L.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c529t-faf2a6f11cbdc395a4f569cec4be56409d30a2b9c160b52e5abc7c0da28775d03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Abundance</topic><topic>Alphaproteobacteria - 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Academic</collection><jtitle>FEMS microbiology letters</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Harbison, Austin B.</au><au>Carson, Michael A.</au><au>Lamit, Louis J.</au><au>Basiliko, Nathan</au><au>Bräuer, Suzanna L.</au><au>Boden, Rich</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A novel isolate and widespread abundance of the candidate alphaproteobacterial order (Ellin 329), in southern Appalachian peatlands</atitle><jtitle>FEMS microbiology letters</jtitle><addtitle>FEMS Microbiol Lett</addtitle><date>2016-08-01</date><risdate>2016</risdate><volume>363</volume><issue>15</issue><spage>fnw151</spage><pages>fnw151-</pages><issn>1574-6968</issn><issn>0378-1097</issn><eissn>1574-6968</eissn><abstract>Peatlands of all latitudes play an integral role in global climate change by serving as a carbon sink and a primary source of atmospheric methane; however, the microbial ecology of mid-latitude peatlands is vastly understudied. Herein, next generation Illumina amplicon sequencing of small subunit rRNA genes was utilized to elucidate the microbial communities in three southern Appalachian peatlands. In contrast to northern peatlands, Proteobacteria dominated over Acidobacteria in all three sites. An average of 11 bacterial phyla was detected at relative abundance values >1%, with three candidate divisions (OP3, WS3 and NC10) represented, indicating high phylogenetic diversity. Physiological traits of isolates within the candidate alphaproteobacterial order, Ellin 329, obtained here and in previous studies indicate that bacteria of this order may be involved in hydrolysis of poly-, di- and monosaccharides. Community analyses indicate that Ellin 329 is the third most abundant order and is most abundant near the surface layers where plant litter decomposition should be primarily occurring. In sum, members of Ellin 329 likely play important roles in organic matter decomposition, in southern Appalachian peatlands and should be investigated further in other peatlands and ecosystem types.
A new order of bacteria, Ellin 329, are abundant in peatlands and may contribute to the decomposition of organic matter and subsequent release of methane to the atmosphere.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>27302469</pmid><doi>10.1093/femsle/fnw151</doi><oa>free_for_read</oa></addata></record> |
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source | Oxford University Press Journals All Titles (1996-Current); MEDLINE; Alma/SFX Local Collection |
subjects | Abundance Alphaproteobacteria - classification Alphaproteobacteria - genetics Alphaproteobacteria - isolation & purification Alphaproteobacteria - metabolism Carbon sinks Climate change Decomposition Ecosystem Genes, rRNA Global climate Latitude Methane - metabolism Microbial activity Microbial Consortia Microbiology Microorganisms Monosaccharides Organic matter Peatlands Phylogeny Relative abundance rRNA Soil Microbiology Surface layers |
title | A novel isolate and widespread abundance of the candidate alphaproteobacterial order (Ellin 329), in southern Appalachian peatlands |
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