Phylogenetic analysis of a free-living strain of Symbiodinium isolated from Jiaozhou Bay, P.R. China
This paper reported the isolation and the phylogenetic analysis of a free-living Gymnodinium-like dinoflagellates (G. sp. (15)) from the sea water collected at Jiaozhou bay, Qingdao, Shandong Province, P.R. China. Phylogenetic reconstruction analysis with Neighbor-Joining (NJ) method using sequences...
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| Veröffentlicht in: | Journal of experimental marine biology and ecology 2003-12, Vol.296 (2), p.135-144 |
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| container_title | Journal of experimental marine biology and ecology |
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| creator | Gou, WanLi Sun, Jun Li, XiuQin Zhen, Yu Xin, Zeyu Yu, ZhiGang Li, RongXiu |
| description | This paper reported the isolation and the phylogenetic analysis of a free-living
Gymnodinium-like dinoflagellates (G. sp. (15)) from the sea water collected at Jiaozhou bay, Qingdao, Shandong Province, P.R. China. Phylogenetic reconstruction analysis with Neighbor-Joining (NJ) method using sequences of variable regions (V1+V2+V3) of the small subunit (SSU) rDNA indicated that G. sp. (15) was a
Symbiodinium sp., which was closely related to a symbiont of anemones,
S. californium, and the free-living strain,
Gymnodinium varians. These three strains formed a new clade (which had been designated as clade F) with 100% bootstrap support. Sequence comparison showed that sequences of the internal transcribed spacer (ITS) of these three strains were highly homologous, suggesting that they might belong to one species. |
| doi_str_mv | 10.1016/S0022-0981(03)00242-9 |
| format | Article |
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Gymnodinium-like dinoflagellates (G. sp. (15)) from the sea water collected at Jiaozhou bay, Qingdao, Shandong Province, P.R. China. Phylogenetic reconstruction analysis with Neighbor-Joining (NJ) method using sequences of variable regions (V1+V2+V3) of the small subunit (SSU) rDNA indicated that G. sp. (15) was a
Symbiodinium sp., which was closely related to a symbiont of anemones,
S. californium, and the free-living strain,
Gymnodinium varians. These three strains formed a new clade (which had been designated as clade F) with 100% bootstrap support. Sequence comparison showed that sequences of the internal transcribed spacer (ITS) of these three strains were highly homologous, suggesting that they might belong to one species.</description><identifier>ISSN: 0022-0981</identifier><identifier>EISSN: 1879-1697</identifier><identifier>DOI: 10.1016/S0022-0981(03)00242-9</identifier><identifier>CODEN: JEMBAM</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>Animal and plant ecology ; Animal, plant and microbial ecology ; Autoecology ; Biological and medical sciences ; Free-living ; Fundamental and applied biological sciences. Psychology ; Genetics of eukaryotes. Biological and molecular evolution ; Gymnodinium ; Gymnodinium varians ; Molecular phylogeny ; Plants and fungi ; Population genetics, reproduction patterns ; Symbiodinium ; Symbiosis ; Thallophyta, bryophyta ; Vegetals ; Zooxanthellae</subject><ispartof>Journal of experimental marine biology and ecology, 2003-12, Vol.296 (2), p.135-144</ispartof><rights>2003 Elsevier B.V.</rights><rights>2004 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c434t-a4ebcfb791f33a07af0fb3b82eda424d5d61b9b56e53f2474ea0c02f8f5138d83</citedby><cites>FETCH-LOGICAL-c434t-a4ebcfb791f33a07af0fb3b82eda424d5d61b9b56e53f2474ea0c02f8f5138d83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0022098103002429$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15177335$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Gou, WanLi</creatorcontrib><creatorcontrib>Sun, Jun</creatorcontrib><creatorcontrib>Li, XiuQin</creatorcontrib><creatorcontrib>Zhen, Yu</creatorcontrib><creatorcontrib>Xin, Zeyu</creatorcontrib><creatorcontrib>Yu, ZhiGang</creatorcontrib><creatorcontrib>Li, RongXiu</creatorcontrib><title>Phylogenetic analysis of a free-living strain of Symbiodinium isolated from Jiaozhou Bay, P.R. China</title><title>Journal of experimental marine biology and ecology</title><description>This paper reported the isolation and the phylogenetic analysis of a free-living
Gymnodinium-like dinoflagellates (G. sp. (15)) from the sea water collected at Jiaozhou bay, Qingdao, Shandong Province, P.R. China. Phylogenetic reconstruction analysis with Neighbor-Joining (NJ) method using sequences of variable regions (V1+V2+V3) of the small subunit (SSU) rDNA indicated that G. sp. (15) was a
Symbiodinium sp., which was closely related to a symbiont of anemones,
S. californium, and the free-living strain,
Gymnodinium varians. These three strains formed a new clade (which had been designated as clade F) with 100% bootstrap support. Sequence comparison showed that sequences of the internal transcribed spacer (ITS) of these three strains were highly homologous, suggesting that they might belong to one species.</description><subject>Animal and plant ecology</subject><subject>Animal, plant and microbial ecology</subject><subject>Autoecology</subject><subject>Biological and medical sciences</subject><subject>Free-living</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>Gymnodinium</subject><subject>Gymnodinium varians</subject><subject>Molecular phylogeny</subject><subject>Plants and fungi</subject><subject>Population genetics, reproduction patterns</subject><subject>Symbiodinium</subject><subject>Symbiosis</subject><subject>Thallophyta, bryophyta</subject><subject>Vegetals</subject><subject>Zooxanthellae</subject><issn>0022-0981</issn><issn>1879-1697</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><recordid>eNqFkE1rHDEMhk1ooZu0P6HgS0oKna099nydSrr0k0BC056NxpazKjN2Ys8Gpr8-s9nQHnsSEs8roYex11KspZD1-2shyrIQXSvPhHq7NLosuiO2km3TFbLummds9Rd5wY5z_i2EkFVZr5i72s5DvMGAE1kOAYY5U-bRc-A-IRYD3VO44XlKQGE_v57HnqKjQLuRU44DTOgWNo78O0H8s407_hHmd_xq_WPNN1sK8JI99zBkfPVUT9ivz59-br4WF5dfvm3OLwqrlZ4K0Nhb3zed9EqBaMAL36u-LdGBLrWrXC37rq9qrJQvdaMRhBWlb30lVetadcLeHPbepni3wzyZkbLFYYCAcZeNbDqlZb0HqwNoU8w5oTe3iUZIs5HC7J2aR6dmL8wIZR6dmm7JnT4dgGxh8AmCpfwvXMmmUapauA8HDpdv7wmTyZYwWHSU0E7GRfrPpQdU3YuN</recordid><startdate>20031201</startdate><enddate>20031201</enddate><creator>Gou, WanLi</creator><creator>Sun, Jun</creator><creator>Li, XiuQin</creator><creator>Zhen, Yu</creator><creator>Xin, Zeyu</creator><creator>Yu, ZhiGang</creator><creator>Li, RongXiu</creator><general>Elsevier B.V</general><general>Elsevier Science</general><scope>IQODW</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SN</scope><scope>7TN</scope><scope>C1K</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope></search><sort><creationdate>20031201</creationdate><title>Phylogenetic analysis of a free-living strain of Symbiodinium isolated from Jiaozhou Bay, P.R. China</title><author>Gou, WanLi ; Sun, Jun ; Li, XiuQin ; Zhen, Yu ; Xin, Zeyu ; Yu, ZhiGang ; Li, RongXiu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c434t-a4ebcfb791f33a07af0fb3b82eda424d5d61b9b56e53f2474ea0c02f8f5138d83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Animal and plant ecology</topic><topic>Animal, plant and microbial ecology</topic><topic>Autoecology</topic><topic>Biological and medical sciences</topic><topic>Free-living</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genetics of eukaryotes. Biological and molecular evolution</topic><topic>Gymnodinium</topic><topic>Gymnodinium varians</topic><topic>Molecular phylogeny</topic><topic>Plants and fungi</topic><topic>Population genetics, reproduction patterns</topic><topic>Symbiodinium</topic><topic>Symbiosis</topic><topic>Thallophyta, bryophyta</topic><topic>Vegetals</topic><topic>Zooxanthellae</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gou, WanLi</creatorcontrib><creatorcontrib>Sun, Jun</creatorcontrib><creatorcontrib>Li, XiuQin</creatorcontrib><creatorcontrib>Zhen, Yu</creatorcontrib><creatorcontrib>Xin, Zeyu</creatorcontrib><creatorcontrib>Yu, ZhiGang</creatorcontrib><creatorcontrib>Li, RongXiu</creatorcontrib><collection>Pascal-Francis</collection><collection>CrossRef</collection><collection>Ecology Abstracts</collection><collection>Oceanic Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><jtitle>Journal of experimental marine biology and ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gou, WanLi</au><au>Sun, Jun</au><au>Li, XiuQin</au><au>Zhen, Yu</au><au>Xin, Zeyu</au><au>Yu, ZhiGang</au><au>Li, RongXiu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic analysis of a free-living strain of Symbiodinium isolated from Jiaozhou Bay, P.R. China</atitle><jtitle>Journal of experimental marine biology and ecology</jtitle><date>2003-12-01</date><risdate>2003</risdate><volume>296</volume><issue>2</issue><spage>135</spage><epage>144</epage><pages>135-144</pages><issn>0022-0981</issn><eissn>1879-1697</eissn><coden>JEMBAM</coden><abstract>This paper reported the isolation and the phylogenetic analysis of a free-living
Gymnodinium-like dinoflagellates (G. sp. (15)) from the sea water collected at Jiaozhou bay, Qingdao, Shandong Province, P.R. China. Phylogenetic reconstruction analysis with Neighbor-Joining (NJ) method using sequences of variable regions (V1+V2+V3) of the small subunit (SSU) rDNA indicated that G. sp. (15) was a
Symbiodinium sp., which was closely related to a symbiont of anemones,
S. californium, and the free-living strain,
Gymnodinium varians. These three strains formed a new clade (which had been designated as clade F) with 100% bootstrap support. Sequence comparison showed that sequences of the internal transcribed spacer (ITS) of these three strains were highly homologous, suggesting that they might belong to one species.</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><doi>10.1016/S0022-0981(03)00242-9</doi><tpages>10</tpages></addata></record> |
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| ispartof | Journal of experimental marine biology and ecology, 2003-12, Vol.296 (2), p.135-144 |
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| source | Elsevier ScienceDirect Journals |
| subjects | Animal and plant ecology Animal, plant and microbial ecology Autoecology Biological and medical sciences Free-living Fundamental and applied biological sciences. Psychology Genetics of eukaryotes. Biological and molecular evolution Gymnodinium Gymnodinium varians Molecular phylogeny Plants and fungi Population genetics, reproduction patterns Symbiodinium Symbiosis Thallophyta, bryophyta Vegetals Zooxanthellae |
| title | Phylogenetic analysis of a free-living strain of Symbiodinium isolated from Jiaozhou Bay, P.R. China |
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