Paenibacillus baekrokdamisoli sp. nov., isolated from soil of crater lake
A novel bacterial strain, Back-11T, was isolated from sediment soil of a crater lake, Baekrokdam, Hallasan, Jeju, Republic of Korea. Cells of strain Back-11T were Gram-stain-positive, motile, endospore-forming, rod-shaped and oxidase- and catalase-positive. It contained anteiso-C15 : 0 as the major...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2016-05, Vol.66 (5), p.1937-1942 |
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| container_end_page | 1942 |
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| container_issue | 5 |
| container_start_page | 1937 |
| container_title | International journal of systematic and evolutionary microbiology |
| container_volume | 66 |
| creator | Lee, Keun Chul Kim, Kwang Kyu Kim, Jong-Shik Kim, Dae-Shin Ko, Suk-Hyung Yang, Seung-Hoon Lee, Jung-Sook |
| description | A novel bacterial strain, Back-11T, was isolated from sediment soil of a crater lake, Baekrokdam, Hallasan, Jeju, Republic of Korea. Cells of strain Back-11T were Gram-stain-positive, motile, endospore-forming, rod-shaped and oxidase- and catalase-positive. It contained anteiso-C15 : 0 as the major fatty acid, menaquinone-7 (MK-7) as the predominant isoprenoid quinone, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and four unidentified aminophospholipids as the main polar lipids, and meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan. The DNA G+C content was 45.3 mol%. Phylogenetic analysis, based on 16S rRNA gene sequencing, showed that strain Back-11T was most closely related to Paenibacillus taihuensis THMBG22T (95.5 % similarity) and fell into a clade in the genus Paenibacillus. On the basis of phylogenetic, chemotaxonomic and phenotypic data, strain Back-11T represents a novel species in the genus Paenibacillus, for which the name Paenibacillus baekrokdamisoli sp. nov. is proposed. The type strain is Back-11T ( = KCTC 33723T = CECT 8890T). |
| doi_str_mv | 10.1099/ijsem.0.000968 |
| format | Article |
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Cells of strain Back-11T were Gram-stain-positive, motile, endospore-forming, rod-shaped and oxidase- and catalase-positive. It contained anteiso-C15 : 0 as the major fatty acid, menaquinone-7 (MK-7) as the predominant isoprenoid quinone, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and four unidentified aminophospholipids as the main polar lipids, and meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan. The DNA G+C content was 45.3 mol%. Phylogenetic analysis, based on 16S rRNA gene sequencing, showed that strain Back-11T was most closely related to Paenibacillus taihuensis THMBG22T (95.5 % similarity) and fell into a clade in the genus Paenibacillus. On the basis of phylogenetic, chemotaxonomic and phenotypic data, strain Back-11T represents a novel species in the genus Paenibacillus, for which the name Paenibacillus baekrokdamisoli sp. nov. is proposed. The type strain is Back-11T ( = KCTC 33723T = CECT 8890T).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.000968</identifier><identifier>PMID: 26868819</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; Diaminopimelic Acid - chemistry ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Lakes - microbiology ; Paenibacillus - classification ; Paenibacillus - genetics ; Paenibacillus - isolation & purification ; Peptidoglycan - chemistry ; Phosphatidylethanolamines - chemistry ; Phosphatidylglycerols - chemistry ; Phylogeny ; Republic of Korea ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology ; Vitamin K 2 - analogs & derivatives ; Vitamin K 2 - chemistry</subject><ispartof>International journal of systematic and evolutionary microbiology, 2016-05, Vol.66 (5), p.1937-1942</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c335t-3489ea009f670296f2bef194faea6efe7906ae7e19d426aca32a4b2f300c99813</citedby><cites>FETCH-LOGICAL-c335t-3489ea009f670296f2bef194faea6efe7906ae7e19d426aca32a4b2f300c99813</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,3746,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26868819$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lee, Keun Chul</creatorcontrib><creatorcontrib>Kim, Kwang Kyu</creatorcontrib><creatorcontrib>Kim, Jong-Shik</creatorcontrib><creatorcontrib>Kim, Dae-Shin</creatorcontrib><creatorcontrib>Ko, Suk-Hyung</creatorcontrib><creatorcontrib>Yang, Seung-Hoon</creatorcontrib><creatorcontrib>Lee, Jung-Sook</creatorcontrib><title>Paenibacillus baekrokdamisoli sp. nov., isolated from soil of crater lake</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A novel bacterial strain, Back-11T, was isolated from sediment soil of a crater lake, Baekrokdam, Hallasan, Jeju, Republic of Korea. Cells of strain Back-11T were Gram-stain-positive, motile, endospore-forming, rod-shaped and oxidase- and catalase-positive. It contained anteiso-C15 : 0 as the major fatty acid, menaquinone-7 (MK-7) as the predominant isoprenoid quinone, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and four unidentified aminophospholipids as the main polar lipids, and meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan. The DNA G+C content was 45.3 mol%. Phylogenetic analysis, based on 16S rRNA gene sequencing, showed that strain Back-11T was most closely related to Paenibacillus taihuensis THMBG22T (95.5 % similarity) and fell into a clade in the genus Paenibacillus. On the basis of phylogenetic, chemotaxonomic and phenotypic data, strain Back-11T represents a novel species in the genus Paenibacillus, for which the name Paenibacillus baekrokdamisoli sp. nov. is proposed. The type strain is Back-11T ( = KCTC 33723T = CECT 8890T).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Diaminopimelic Acid - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Lakes - microbiology</subject><subject>Paenibacillus - classification</subject><subject>Paenibacillus - genetics</subject><subject>Paenibacillus - isolation & purification</subject><subject>Peptidoglycan - chemistry</subject><subject>Phosphatidylethanolamines - chemistry</subject><subject>Phosphatidylglycerols - chemistry</subject><subject>Phylogeny</subject><subject>Republic of Korea</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Vitamin K 2 - analogs & derivatives</subject><subject>Vitamin K 2 - chemistry</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kL1PwzAQxS0EoqWwMiKPDDSc49SxR4T4qFQJBpitS3KW0jp1sRsk_ntSWjrd3dO7p6cfY9cCMgHG3LfLRF0GGQAYpU_YWBRKTWcgi9PjnqsRu0hpCTAIAOdslCuttBZmzObvSOu2wrr1vk-8QlrFsGqwa1PwLU-bjK_Dd3bHdzduqeEuho6n0HoeHK_joEXucUWX7MyhT3R1mBP2-fz08fg6Xby9zB8fFtNaytl2KgttCIe2TpWQG-XyipwwhUNCRY5KAwqpJGGaIldYo8yxqHInAWpjtJATdrvP3cTw1VPa2qFrTd7jmkKfrCh1CdqYAgZrtrfWMaQUydlNbDuMP1aA3eGzf_gs2D2-4eHmkN1XHTVH-z8v-QvGjWvn</recordid><startdate>201605</startdate><enddate>201605</enddate><creator>Lee, Keun Chul</creator><creator>Kim, Kwang Kyu</creator><creator>Kim, Jong-Shik</creator><creator>Kim, Dae-Shin</creator><creator>Ko, Suk-Hyung</creator><creator>Yang, Seung-Hoon</creator><creator>Lee, Jung-Sook</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>201605</creationdate><title>Paenibacillus baekrokdamisoli sp. nov., isolated from soil of crater lake</title><author>Lee, Keun Chul ; Kim, Kwang Kyu ; Kim, Jong-Shik ; Kim, Dae-Shin ; Ko, Suk-Hyung ; Yang, Seung-Hoon ; Lee, Jung-Sook</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-3489ea009f670296f2bef194faea6efe7906ae7e19d426aca32a4b2f300c99813</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Diaminopimelic Acid - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Lakes - microbiology</topic><topic>Paenibacillus - classification</topic><topic>Paenibacillus - genetics</topic><topic>Paenibacillus - isolation & purification</topic><topic>Peptidoglycan - chemistry</topic><topic>Phosphatidylethanolamines - chemistry</topic><topic>Phosphatidylglycerols - chemistry</topic><topic>Phylogeny</topic><topic>Republic of Korea</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Vitamin K 2 - analogs & derivatives</topic><topic>Vitamin K 2 - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lee, Keun Chul</creatorcontrib><creatorcontrib>Kim, Kwang Kyu</creatorcontrib><creatorcontrib>Kim, Jong-Shik</creatorcontrib><creatorcontrib>Kim, Dae-Shin</creatorcontrib><creatorcontrib>Ko, Suk-Hyung</creatorcontrib><creatorcontrib>Yang, Seung-Hoon</creatorcontrib><creatorcontrib>Lee, Jung-Sook</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lee, Keun Chul</au><au>Kim, Kwang Kyu</au><au>Kim, Jong-Shik</au><au>Kim, Dae-Shin</au><au>Ko, Suk-Hyung</au><au>Yang, Seung-Hoon</au><au>Lee, Jung-Sook</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Paenibacillus baekrokdamisoli sp. nov., isolated from soil of crater lake</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2016-05</date><risdate>2016</risdate><volume>66</volume><issue>5</issue><spage>1937</spage><epage>1942</epage><pages>1937-1942</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A novel bacterial strain, Back-11T, was isolated from sediment soil of a crater lake, Baekrokdam, Hallasan, Jeju, Republic of Korea. Cells of strain Back-11T were Gram-stain-positive, motile, endospore-forming, rod-shaped and oxidase- and catalase-positive. It contained anteiso-C15 : 0 as the major fatty acid, menaquinone-7 (MK-7) as the predominant isoprenoid quinone, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and four unidentified aminophospholipids as the main polar lipids, and meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan. The DNA G+C content was 45.3 mol%. Phylogenetic analysis, based on 16S rRNA gene sequencing, showed that strain Back-11T was most closely related to Paenibacillus taihuensis THMBG22T (95.5 % similarity) and fell into a clade in the genus Paenibacillus. On the basis of phylogenetic, chemotaxonomic and phenotypic data, strain Back-11T represents a novel species in the genus Paenibacillus, for which the name Paenibacillus baekrokdamisoli sp. nov. is proposed. The type strain is Back-11T ( = KCTC 33723T = CECT 8890T).</abstract><cop>England</cop><pmid>26868819</pmid><doi>10.1099/ijsem.0.000968</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition Diaminopimelic Acid - chemistry DNA, Bacterial - genetics Fatty Acids - chemistry Lakes - microbiology Paenibacillus - classification Paenibacillus - genetics Paenibacillus - isolation & purification Peptidoglycan - chemistry Phosphatidylethanolamines - chemistry Phosphatidylglycerols - chemistry Phylogeny Republic of Korea RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology Vitamin K 2 - analogs & derivatives Vitamin K 2 - chemistry |
| title | Paenibacillus baekrokdamisoli sp. nov., isolated from soil of crater lake |
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