Development and Interlaboratory Validation of a Simple Screening Method for Genetically Modified Maize Using a ΔΔC(q)-Based Multiplex Real-Time PCR Assay
A number of genetically modified (GM) maize events have been developed and approved worldwide for commercial cultivation. A screening method is needed to monitor GM maize approved for commercialization in countries that mandate the labeling of foods containing a specified threshold level of GM crops...
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Veröffentlicht in: | Analytical chemistry (Washington) 2016-04, Vol.88 (8), p.4285-4293 |
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creator | Noguchi, Akio Nakamura, Kosuke Sakata, Kozue Sato-Fukuda, Nozomi Ishigaki, Takumi Mano, Junichi Takabatake, Reona Kitta, Kazumi Teshima, Reiko Kondo, Kazunari Nishimaki-Mogami, Tomoko |
description | A number of genetically modified (GM) maize events have been developed and approved worldwide for commercial cultivation. A screening method is needed to monitor GM maize approved for commercialization in countries that mandate the labeling of foods containing a specified threshold level of GM crops. In Japan, a screening method has been implemented to monitor approved GM maize since 2001. However, the screening method currently used in Japan is time-consuming and requires generation of a calibration curve and experimental conversion factor (C(f)) value. We developed a simple screening method that avoids the need for a calibration curve and C(f) value. In this method, ΔC(q) values between the target sequences and the endogenous gene are calculated using multiplex real-time PCR, and the ΔΔC(q) value between the analytical and control samples is used as the criterion for determining analytical samples in which the GM organism content is below the threshold level for labeling of GM crops. An interlaboratory study indicated that the method is applicable independently with at least two models of PCR instruments used in this study. |
doi_str_mv | 10.1021/acs.analchem.5b04335 |
format | Article |
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A screening method is needed to monitor GM maize approved for commercialization in countries that mandate the labeling of foods containing a specified threshold level of GM crops. In Japan, a screening method has been implemented to monitor approved GM maize since 2001. However, the screening method currently used in Japan is time-consuming and requires generation of a calibration curve and experimental conversion factor (C(f)) value. We developed a simple screening method that avoids the need for a calibration curve and C(f) value. In this method, ΔC(q) values between the target sequences and the endogenous gene are calculated using multiplex real-time PCR, and the ΔΔC(q) value between the analytical and control samples is used as the criterion for determining analytical samples in which the GM organism content is below the threshold level for labeling of GM crops. 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An interlaboratory study indicated that the method is applicable independently with at least two models of PCR instruments used in this study.</description><subject>Calibration</subject><subject>DNA, Plant - analysis</subject><subject>DNA, Plant - genetics</subject><subject>Food, Genetically Modified</subject><subject>Japan</subject><subject>Plants, Genetically Modified - genetics</subject><subject>Real-Time Polymerase Chain Reaction - methods</subject><subject>Zea mays - genetics</subject><issn>1520-6882</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo1kM1OGzEUhS2kCijwBqi6S7qY1D9jz7CkaUmRiEAQ2EY34-vGlccexhNEeI7seKc8U4NKV2dxvvMtDmOngo8El-IbNnmEEUOzpHakF7xUSu-xQ6ElL0xdywP2Oec_nAvBhdlnB7Ligle1OmRvP-iZQupaigNgtHAVB-oDLlKPQ-rX8IjBWxx8ipAcINz7tgsE901PFH38DVMalsmCSz1MKNLgGwxhDdNkvfNkYYr-leAhv7MI2812Mz57-lp8x_xersLgd74XuCMMxcy3BLfjO7jIGdfH7JPDkOnkI4_Y7PLnbPyruL6ZXI0vrotOG1VUttIlNtSca9SGS4POVqWSWjtslC6F425hTWWkoR157oRzjnYLbZ0ptVJH7OyftuvT04ryMG99bigEjJRWeS6qWtaqlMrs0C8f6GrRkp13vW-xX8___6n-Al3veyE</recordid><startdate>20160419</startdate><enddate>20160419</enddate><creator>Noguchi, Akio</creator><creator>Nakamura, Kosuke</creator><creator>Sakata, Kozue</creator><creator>Sato-Fukuda, Nozomi</creator><creator>Ishigaki, Takumi</creator><creator>Mano, Junichi</creator><creator>Takabatake, Reona</creator><creator>Kitta, Kazumi</creator><creator>Teshima, Reiko</creator><creator>Kondo, Kazunari</creator><creator>Nishimaki-Mogami, Tomoko</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope></search><sort><creationdate>20160419</creationdate><title>Development and Interlaboratory Validation of a Simple Screening Method for Genetically Modified Maize Using a ΔΔC(q)-Based Multiplex Real-Time PCR Assay</title><author>Noguchi, Akio ; Nakamura, Kosuke ; Sakata, Kozue ; Sato-Fukuda, Nozomi ; Ishigaki, Takumi ; Mano, Junichi ; Takabatake, Reona ; Kitta, Kazumi ; Teshima, Reiko ; Kondo, Kazunari ; Nishimaki-Mogami, Tomoko</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p563-7d754acec95a56026afd743255fac3541f0fbd67626e7549f1fffe4ac5df64533</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Calibration</topic><topic>DNA, Plant - analysis</topic><topic>DNA, Plant - genetics</topic><topic>Food, Genetically Modified</topic><topic>Japan</topic><topic>Plants, Genetically Modified - genetics</topic><topic>Real-Time Polymerase Chain Reaction - methods</topic><topic>Zea mays - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Noguchi, Akio</creatorcontrib><creatorcontrib>Nakamura, Kosuke</creatorcontrib><creatorcontrib>Sakata, Kozue</creatorcontrib><creatorcontrib>Sato-Fukuda, Nozomi</creatorcontrib><creatorcontrib>Ishigaki, Takumi</creatorcontrib><creatorcontrib>Mano, Junichi</creatorcontrib><creatorcontrib>Takabatake, Reona</creatorcontrib><creatorcontrib>Kitta, Kazumi</creatorcontrib><creatorcontrib>Teshima, Reiko</creatorcontrib><creatorcontrib>Kondo, Kazunari</creatorcontrib><creatorcontrib>Nishimaki-Mogami, Tomoko</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><jtitle>Analytical chemistry (Washington)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Noguchi, Akio</au><au>Nakamura, Kosuke</au><au>Sakata, Kozue</au><au>Sato-Fukuda, Nozomi</au><au>Ishigaki, Takumi</au><au>Mano, Junichi</au><au>Takabatake, Reona</au><au>Kitta, Kazumi</au><au>Teshima, Reiko</au><au>Kondo, Kazunari</au><au>Nishimaki-Mogami, Tomoko</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Development and Interlaboratory Validation of a Simple Screening Method for Genetically Modified Maize Using a ΔΔC(q)-Based Multiplex Real-Time PCR Assay</atitle><jtitle>Analytical chemistry (Washington)</jtitle><addtitle>Anal Chem</addtitle><date>2016-04-19</date><risdate>2016</risdate><volume>88</volume><issue>8</issue><spage>4285</spage><epage>4293</epage><pages>4285-4293</pages><eissn>1520-6882</eissn><abstract>A number of genetically modified (GM) maize events have been developed and approved worldwide for commercial cultivation. A screening method is needed to monitor GM maize approved for commercialization in countries that mandate the labeling of foods containing a specified threshold level of GM crops. In Japan, a screening method has been implemented to monitor approved GM maize since 2001. However, the screening method currently used in Japan is time-consuming and requires generation of a calibration curve and experimental conversion factor (C(f)) value. We developed a simple screening method that avoids the need for a calibration curve and C(f) value. In this method, ΔC(q) values between the target sequences and the endogenous gene are calculated using multiplex real-time PCR, and the ΔΔC(q) value between the analytical and control samples is used as the criterion for determining analytical samples in which the GM organism content is below the threshold level for labeling of GM crops. 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subjects | Calibration DNA, Plant - analysis DNA, Plant - genetics Food, Genetically Modified Japan Plants, Genetically Modified - genetics Real-Time Polymerase Chain Reaction - methods Zea mays - genetics |
title | Development and Interlaboratory Validation of a Simple Screening Method for Genetically Modified Maize Using a ΔΔC(q)-Based Multiplex Real-Time PCR Assay |
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