first genetic map of a synthesized allohexaploid Brassica with A, B and C genomes based on simple sequence repeat markers
KEY MESSAGE : We present the first genetic map of an allohexaploid Brassica species, based on segregating microsatellite markers in a doubled haploid mapping population generated from a hybrid between two hexaploid parents. This study reports the first genetic map of trigenomic Brassica. A doubled h...
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| Veröffentlicht in: | Theoretical and applied genetics 2016-04, Vol.129 (4), p.689-701 |
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| creator | Yang, S. Chen, S. Geng, X. X. Yan, G. Li, Z. Y. Meng, J. L. Cowling, W. A. Zhou, W. J. |
| description | KEY MESSAGE : We present the first genetic map of an allohexaploid Brassica species, based on segregating microsatellite markers in a doubled haploid mapping population generated from a hybrid between two hexaploid parents. This study reports the first genetic map of trigenomic Brassica. A doubled haploid mapping population consisting of 189 lines was obtained via microspore culture from a hybrid H16-1 derived from a cross between two allohexaploid Brassica lines (7H170-1 and Y54-2). Simple sequence repeat primer pairs specific to the A genome (107), B genome (44) and C genome (109) were used to construct a genetic linkage map of the population. Twenty-seven linkage groups were resolved from 274 polymorphic loci on the A genome (109), B genome (49) and C genome (116) covering a total genetic distance of 3178.8 cM with an average distance between markers of 11.60 cM. This is the first genetic framework map for the artificially synthesized Brassica allohexaploids. The linkage groups represent the expected complement of chromosomes in the A, B and C genomes from the original diploid and tetraploid parents. This framework linkage map will be valuable for QTL analysis and future genetic improvement of a new allohexaploid Brassica species, and in improving our understanding of the genetic control of meiosis in new polyploids. |
| doi_str_mv | 10.1007/s00122-015-2657-z |
| format | Article |
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Twenty-seven linkage groups were resolved from 274 polymorphic loci on the A genome (109), B genome (49) and C genome (116) covering a total genetic distance of 3178.8 cM with an average distance between markers of 11.60 cM. This is the first genetic framework map for the artificially synthesized Brassica allohexaploids. The linkage groups represent the expected complement of chromosomes in the A, B and C genomes from the original diploid and tetraploid parents. This framework linkage map will be valuable for QTL analysis and future genetic improvement of a new allohexaploid Brassica species, and in improving our understanding of the genetic control of meiosis in new polyploids.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-015-2657-z</identifier><identifier>PMID: 26781429</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agriculture ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Brassica ; Brassica - genetics ; Chromosome Mapping ; Chromosomes ; Cruciferae ; DNA Primers ; DNA sequencing ; DNA, Plant - genetics ; Genetic aspects ; Genetic Linkage ; Genomes ; Germplasm ; Haploidy ; Life Sciences ; Methods ; Microsatellite Repeats ; Nucleotide sequencing ; Observations ; Original Article ; Plant Biochemistry ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Polymorphism ; Polyploidy</subject><ispartof>Theoretical and applied genetics, 2016-04, Vol.129 (4), p.689-701</ispartof><rights>Springer-Verlag Berlin Heidelberg 2016</rights><rights>COPYRIGHT 2016 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c530t-fcdef4986d2b285333a0bd292e2857a51d367fd67eec72ee7fba3749f88e24ef3</citedby><cites>FETCH-LOGICAL-c530t-fcdef4986d2b285333a0bd292e2857a51d367fd67eec72ee7fba3749f88e24ef3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00122-015-2657-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00122-015-2657-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27903,27904,41466,42535,51296</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26781429$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yang, S.</creatorcontrib><creatorcontrib>Chen, S.</creatorcontrib><creatorcontrib>Geng, X. 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Simple sequence repeat primer pairs specific to the A genome (107), B genome (44) and C genome (109) were used to construct a genetic linkage map of the population. Twenty-seven linkage groups were resolved from 274 polymorphic loci on the A genome (109), B genome (49) and C genome (116) covering a total genetic distance of 3178.8 cM with an average distance between markers of 11.60 cM. This is the first genetic framework map for the artificially synthesized Brassica allohexaploids. The linkage groups represent the expected complement of chromosomes in the A, B and C genomes from the original diploid and tetraploid parents. 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X. ; Yan, G. ; Li, Z. Y. ; Meng, J. L. ; Cowling, W. A. ; Zhou, W. 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X.</au><au>Yan, G.</au><au>Li, Z. Y.</au><au>Meng, J. L.</au><au>Cowling, W. A.</au><au>Zhou, W. J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>first genetic map of a synthesized allohexaploid Brassica with A, B and C genomes based on simple sequence repeat markers</atitle><jtitle>Theoretical and applied genetics</jtitle><stitle>Theor Appl Genet</stitle><addtitle>Theor Appl Genet</addtitle><date>2016-04-01</date><risdate>2016</risdate><volume>129</volume><issue>4</issue><spage>689</spage><epage>701</epage><pages>689-701</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><abstract>KEY MESSAGE : We present the first genetic map of an allohexaploid Brassica species, based on segregating microsatellite markers in a doubled haploid mapping population generated from a hybrid between two hexaploid parents. This study reports the first genetic map of trigenomic Brassica. A doubled haploid mapping population consisting of 189 lines was obtained via microspore culture from a hybrid H16-1 derived from a cross between two allohexaploid Brassica lines (7H170-1 and Y54-2). Simple sequence repeat primer pairs specific to the A genome (107), B genome (44) and C genome (109) were used to construct a genetic linkage map of the population. Twenty-seven linkage groups were resolved from 274 polymorphic loci on the A genome (109), B genome (49) and C genome (116) covering a total genetic distance of 3178.8 cM with an average distance between markers of 11.60 cM. This is the first genetic framework map for the artificially synthesized Brassica allohexaploids. The linkage groups represent the expected complement of chromosomes in the A, B and C genomes from the original diploid and tetraploid parents. This framework linkage map will be valuable for QTL analysis and future genetic improvement of a new allohexaploid Brassica species, and in improving our understanding of the genetic control of meiosis in new polyploids.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>26781429</pmid><doi>10.1007/s00122-015-2657-z</doi><tpages>13</tpages></addata></record> |
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| ispartof | Theoretical and applied genetics, 2016-04, Vol.129 (4), p.689-701 |
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| subjects | Agriculture Biochemistry Biomedical and Life Sciences Biotechnology Brassica Brassica - genetics Chromosome Mapping Chromosomes Cruciferae DNA Primers DNA sequencing DNA, Plant - genetics Genetic aspects Genetic Linkage Genomes Germplasm Haploidy Life Sciences Methods Microsatellite Repeats Nucleotide sequencing Observations Original Article Plant Biochemistry Plant Breeding/Biotechnology Plant Genetics and Genomics Polymorphism Polyploidy |
| title | first genetic map of a synthesized allohexaploid Brassica with A, B and C genomes based on simple sequence repeat markers |
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