Assessment of functional diversity and structure of phytate-hydrolysing bacterial community in Lolium perenne rhizosphere
BACKGROUND AND AIMS: Plant growth is frequently limited by the availability of inorganic phosphorus (P) in the soil. In most soils, a considerable amount of the soil P is bound to organic molecules. Of these, phytate is the most abundant identifiable organic P form, but is not readily available to p...
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description | BACKGROUND AND AIMS: Plant growth is frequently limited by the availability of inorganic phosphorus (P) in the soil. In most soils, a considerable amount of the soil P is bound to organic molecules. Of these, phytate is the most abundant identifiable organic P form, but is not readily available to plants. In contrast, microorganisms have been shown to degrade phytate with high efficiency. The current study aims to characterize the members of the phytate-hydrolysing bacterial community in rhizosphere, and the molecular and enzymatic ability of these bacteria to degrade phytate. METHODS AND RESULTS: The phytate-hydrolysing bacterial community was characterized from the rhizosphere of plants cultivated in the presence or absence of phytate supplementation. Major changes in the bacterial community structure were observed with both culture-dependent and -independent methods, which highlighted the predominance of Proteobacteria and Actinobacteria. Phytase activity was detected for a range of rhizobacterial isolates as well as the presence of, β-propeller phytases (BPP) for both isolates and directly in a soil sample. CONCLUSION: A wide taxonomic range of functional phytate utilizers have been discovered, in soil bacterial taxa that were previously not well known for their ability to utilise phytate as P or C sources. This study provides new insights into microbial carbon and phosphorus cycling in soil. |
doi_str_mv | 10.1007/s11104-015-2512-7 |
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In most soils, a considerable amount of the soil P is bound to organic molecules. Of these, phytate is the most abundant identifiable organic P form, but is not readily available to plants. In contrast, microorganisms have been shown to degrade phytate with high efficiency. The current study aims to characterize the members of the phytate-hydrolysing bacterial community in rhizosphere, and the molecular and enzymatic ability of these bacteria to degrade phytate. METHODS AND RESULTS: The phytate-hydrolysing bacterial community was characterized from the rhizosphere of plants cultivated in the presence or absence of phytate supplementation. Major changes in the bacterial community structure were observed with both culture-dependent and -independent methods, which highlighted the predominance of Proteobacteria and Actinobacteria. Phytase activity was detected for a range of rhizobacterial isolates as well as the presence of, β-propeller phytases (BPP) for both isolates and directly in a soil sample. CONCLUSION: A wide taxonomic range of functional phytate utilizers have been discovered, in soil bacterial taxa that were previously not well known for their ability to utilise phytate as P or C sources. This study provides new insights into microbial carbon and phosphorus cycling in soil.</description><identifier>ISSN: 0032-079X</identifier><identifier>EISSN: 1573-5036</identifier><identifier>DOI: 10.1007/s11104-015-2512-7</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Acid soils ; Actinobacteria ; Agricultural soils ; Agrology ; Bacteria ; bacterial communities ; Biomedical and Life Sciences ; carbon ; Community structure ; Ecology ; functional diversity ; Health aspects ; Host-bacteria relationships ; inorganic phosphorus ; Life Sciences ; Lolium perenne ; Microorganisms ; Observations ; Organic soils ; Phosphates ; Phosphorus ; phytases ; phytic acid ; Plant growth ; Plant Physiology ; Plant Sciences ; Plant-soil relationships ; Polymerase chain reaction ; Proteobacteria ; Regular Article ; Rhizosphere ; Rhizosphere bacteria ; soil ; Soil bacteria ; Soil fertility ; Soil microorganisms ; Soil phosphorus ; Soil Science & Conservation ; Soils</subject><ispartof>Plant and soil, 2016-04, Vol.401 (1-2), p.151-167</ispartof><rights>Springer Science+Business Media 2016</rights><rights>Springer International Publishing Switzerland 2015</rights><rights>COPYRIGHT 2016 Springer</rights><rights>Springer International Publishing Switzerland 2016</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c570t-8db51d7bfa516cdcf09004764abcfe2c2ca1f395cde327fb2c273cdff62d658f3</citedby><cites>FETCH-LOGICAL-c570t-8db51d7bfa516cdcf09004764abcfe2c2ca1f395cde327fb2c273cdff62d658f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/26180711$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/26180711$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,803,27923,27924,41487,42556,51318,58016,58249</link.rule.ids></links><search><creatorcontrib>Sanguin, Hervé</creatorcontrib><creatorcontrib>Wilson, Neil L</creatorcontrib><creatorcontrib>Kertesz, Michael A</creatorcontrib><title>Assessment of functional diversity and structure of phytate-hydrolysing bacterial community in Lolium perenne rhizosphere</title><title>Plant and soil</title><addtitle>Plant Soil</addtitle><description>BACKGROUND AND AIMS: Plant growth is frequently limited by the availability of inorganic phosphorus (P) in the soil. In most soils, a considerable amount of the soil P is bound to organic molecules. Of these, phytate is the most abundant identifiable organic P form, but is not readily available to plants. In contrast, microorganisms have been shown to degrade phytate with high efficiency. The current study aims to characterize the members of the phytate-hydrolysing bacterial community in rhizosphere, and the molecular and enzymatic ability of these bacteria to degrade phytate. METHODS AND RESULTS: The phytate-hydrolysing bacterial community was characterized from the rhizosphere of plants cultivated in the presence or absence of phytate supplementation. Major changes in the bacterial community structure were observed with both culture-dependent and -independent methods, which highlighted the predominance of Proteobacteria and Actinobacteria. Phytase activity was detected for a range of rhizobacterial isolates as well as the presence of, β-propeller phytases (BPP) for both isolates and directly in a soil sample. CONCLUSION: A wide taxonomic range of functional phytate utilizers have been discovered, in soil bacterial taxa that were previously not well known for their ability to utilise phytate as P or C sources. This study provides new insights into microbial carbon and phosphorus cycling in soil.</description><subject>Acid soils</subject><subject>Actinobacteria</subject><subject>Agricultural soils</subject><subject>Agrology</subject><subject>Bacteria</subject><subject>bacterial communities</subject><subject>Biomedical and Life Sciences</subject><subject>carbon</subject><subject>Community structure</subject><subject>Ecology</subject><subject>functional diversity</subject><subject>Health aspects</subject><subject>Host-bacteria relationships</subject><subject>inorganic phosphorus</subject><subject>Life Sciences</subject><subject>Lolium perenne</subject><subject>Microorganisms</subject><subject>Observations</subject><subject>Organic soils</subject><subject>Phosphates</subject><subject>Phosphorus</subject><subject>phytases</subject><subject>phytic acid</subject><subject>Plant growth</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Plant-soil relationships</subject><subject>Polymerase chain reaction</subject><subject>Proteobacteria</subject><subject>Regular Article</subject><subject>Rhizosphere</subject><subject>Rhizosphere bacteria</subject><subject>soil</subject><subject>Soil bacteria</subject><subject>Soil fertility</subject><subject>Soil microorganisms</subject><subject>Soil phosphorus</subject><subject>Soil Science & Conservation</subject><subject>Soils</subject><issn>0032-079X</issn><issn>1573-5036</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU2r1DAUhosoOF79AS7Eghs3vZ6TNkm7HC7XDxhwoRfchTRNZjK0SU1Sof56UyoiLiSLcM55niTkLYqXCLcIwN9FRISmAqQVoUgq_qg4IOV1RaFmj4sDQE0q4N23p8WzGK-w1cgOxXqMUcc4aZdKb0qzOJWsd3IsB_tDh2jTWko3lDGFRaUl6I2aL2uSSVeXdQh-XKN157KXKulgs6j8NC1uE60rT360y1TOOmjndBku9qeP8yWXz4snRo5Rv_i93xQP7--_3n2sTp8_fLo7nipFOaSqHXqKA--NpMjUoAx0AA1njeyV0UQRJdHUHVWDrgk3fe7wWg3GMDIw2pr6pni7nzsH_33RMYnJRqXHUTrtlyiQt0CxQ2QZffMPevVLyJ-xUbxBThtGMnW7U2c5amGd8SlIldegJ6u808bm_rFpGKe0JTQLuAsq-BiDNmIOdpJhFQhiS0_s6YmcntjSEzw7ZHdiZt1Zh7-e8h_p1S5dY_Lhzy2EYQscMc9f73MjvZDnYKN4-EIAGQCSuoOm_gUvqLLS</recordid><startdate>20160401</startdate><enddate>20160401</enddate><creator>Sanguin, Hervé</creator><creator>Wilson, Neil L</creator><creator>Kertesz, Michael A</creator><general>Springer International Publishing</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7ST</scope><scope>7T7</scope><scope>7X2</scope><scope>88A</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>RC3</scope><scope>SOI</scope></search><sort><creationdate>20160401</creationdate><title>Assessment of functional diversity and structure of phytate-hydrolysing bacterial community in Lolium perenne rhizosphere</title><author>Sanguin, Hervé ; Wilson, Neil L ; Kertesz, Michael A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c570t-8db51d7bfa516cdcf09004764abcfe2c2ca1f395cde327fb2c273cdff62d658f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Acid soils</topic><topic>Actinobacteria</topic><topic>Agricultural soils</topic><topic>Agrology</topic><topic>Bacteria</topic><topic>bacterial communities</topic><topic>Biomedical and Life Sciences</topic><topic>carbon</topic><topic>Community structure</topic><topic>Ecology</topic><topic>functional diversity</topic><topic>Health aspects</topic><topic>Host-bacteria relationships</topic><topic>inorganic phosphorus</topic><topic>Life Sciences</topic><topic>Lolium perenne</topic><topic>Microorganisms</topic><topic>Observations</topic><topic>Organic soils</topic><topic>Phosphates</topic><topic>Phosphorus</topic><topic>phytases</topic><topic>phytic acid</topic><topic>Plant growth</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Plant-soil relationships</topic><topic>Polymerase chain reaction</topic><topic>Proteobacteria</topic><topic>Regular Article</topic><topic>Rhizosphere</topic><topic>Rhizosphere bacteria</topic><topic>soil</topic><topic>Soil bacteria</topic><topic>Soil fertility</topic><topic>Soil microorganisms</topic><topic>Soil phosphorus</topic><topic>Soil Science & Conservation</topic><topic>Soils</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sanguin, Hervé</creatorcontrib><creatorcontrib>Wilson, Neil L</creatorcontrib><creatorcontrib>Kertesz, Michael A</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Ecology Abstracts</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Agricultural Science Collection</collection><collection>Biology Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><jtitle>Plant and soil</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sanguin, Hervé</au><au>Wilson, Neil L</au><au>Kertesz, Michael A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Assessment of functional diversity and structure of phytate-hydrolysing bacterial community in Lolium perenne rhizosphere</atitle><jtitle>Plant and soil</jtitle><stitle>Plant Soil</stitle><date>2016-04-01</date><risdate>2016</risdate><volume>401</volume><issue>1-2</issue><spage>151</spage><epage>167</epage><pages>151-167</pages><issn>0032-079X</issn><eissn>1573-5036</eissn><abstract>BACKGROUND AND AIMS: Plant growth is frequently limited by the availability of inorganic phosphorus (P) in the soil. In most soils, a considerable amount of the soil P is bound to organic molecules. Of these, phytate is the most abundant identifiable organic P form, but is not readily available to plants. In contrast, microorganisms have been shown to degrade phytate with high efficiency. The current study aims to characterize the members of the phytate-hydrolysing bacterial community in rhizosphere, and the molecular and enzymatic ability of these bacteria to degrade phytate. METHODS AND RESULTS: The phytate-hydrolysing bacterial community was characterized from the rhizosphere of plants cultivated in the presence or absence of phytate supplementation. Major changes in the bacterial community structure were observed with both culture-dependent and -independent methods, which highlighted the predominance of Proteobacteria and Actinobacteria. Phytase activity was detected for a range of rhizobacterial isolates as well as the presence of, β-propeller phytases (BPP) for both isolates and directly in a soil sample. CONCLUSION: A wide taxonomic range of functional phytate utilizers have been discovered, in soil bacterial taxa that were previously not well known for their ability to utilise phytate as P or C sources. This study provides new insights into microbial carbon and phosphorus cycling in soil.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><doi>10.1007/s11104-015-2512-7</doi><tpages>17</tpages></addata></record> |
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subjects | Acid soils Actinobacteria Agricultural soils Agrology Bacteria bacterial communities Biomedical and Life Sciences carbon Community structure Ecology functional diversity Health aspects Host-bacteria relationships inorganic phosphorus Life Sciences Lolium perenne Microorganisms Observations Organic soils Phosphates Phosphorus phytases phytic acid Plant growth Plant Physiology Plant Sciences Plant-soil relationships Polymerase chain reaction Proteobacteria Regular Article Rhizosphere Rhizosphere bacteria soil Soil bacteria Soil fertility Soil microorganisms Soil phosphorus Soil Science & Conservation Soils |
title | Assessment of functional diversity and structure of phytate-hydrolysing bacterial community in Lolium perenne rhizosphere |
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