Antibody-coupled siRNA as an efficient method for in vivo mRNA knockdown
This virus-free approach for mRNA knockdown in vivo uses the siRNA carrier peptide protamine, chemically coupled to a cell surface receptor internalizing antibodies via sulfo-SMCC, to provide protection and guidance for the targeted application of siRNA. Knockdown of genes by RNA interference (RNAi)...
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creator | Bäumer, Nicole Appel, Neele Terheyden, Lisa Buchholz, Frank Rossig, Claudia Müller-Tidow, Carsten Berdel, Wolfgang E Bäumer, Sebastian |
description | This virus-free approach for mRNA knockdown
in vivo
uses the siRNA carrier peptide protamine, chemically coupled to a cell surface receptor internalizing antibodies via sulfo-SMCC, to provide protection and guidance for the targeted application of siRNA.
Knockdown of genes by RNA interference (RNAi)
in vitro
requires methods of transfection or transduction, both of which have limited impact
in vivo
. As a virus-free approach, we chemically coupled cell surface receptors internalizing antibodies to the short interfering RNA (siRNA) carrier peptide protamine using the bispecific cross-linker sulfo-SMCC (sulfosuccinimidyl 4-(
N
-maleimidomethyl)cyclohexane-1-carboxylate). First, protamine was conjugated amino-terminally to sulfo-SMCC, and then this conjugate was coupled via cysteine residues to the IgG backbone to carry siRNA. This complex can efficiently find, bind and internalize into receptor-positive cells
in vitro
and
in vivo
, which can be checked by flow cytometry, fluorescence microscopy and western blotting. This method obtains results similar to those of siRNA targeting molecules engineered by genetic fusions between receptor-binding and siRNA carrier units, with the advantage of using readily available purified proteins without the need for engineering, expression and purification of respective constructs. The procedure for coupling the complex takes ∼2 d, and the functional assays take ∼2 weeks. |
doi_str_mv | 10.1038/nprot.2015.137 |
format | Article |
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in vivo
uses the siRNA carrier peptide protamine, chemically coupled to a cell surface receptor internalizing antibodies via sulfo-SMCC, to provide protection and guidance for the targeted application of siRNA.
Knockdown of genes by RNA interference (RNAi)
in vitro
requires methods of transfection or transduction, both of which have limited impact
in vivo
. As a virus-free approach, we chemically coupled cell surface receptors internalizing antibodies to the short interfering RNA (siRNA) carrier peptide protamine using the bispecific cross-linker sulfo-SMCC (sulfosuccinimidyl 4-(
N
-maleimidomethyl)cyclohexane-1-carboxylate). First, protamine was conjugated amino-terminally to sulfo-SMCC, and then this conjugate was coupled via cysteine residues to the IgG backbone to carry siRNA. This complex can efficiently find, bind and internalize into receptor-positive cells
in vitro
and
in vivo
, which can be checked by flow cytometry, fluorescence microscopy and western blotting. This method obtains results similar to those of siRNA targeting molecules engineered by genetic fusions between receptor-binding and siRNA carrier units, with the advantage of using readily available purified proteins without the need for engineering, expression and purification of respective constructs. The procedure for coupling the complex takes ∼2 d, and the functional assays take ∼2 weeks.</description><identifier>ISSN: 1754-2189</identifier><identifier>EISSN: 1750-2799</identifier><identifier>DOI: 10.1038/nprot.2015.137</identifier><identifier>PMID: 26633129</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/1647/1407/505 ; 631/45/2783 ; 631/61/2299 ; 631/61/51/1568 ; Analytical Chemistry ; Animals ; Antibodies ; Antibodies - chemistry ; Antibodies - immunology ; Antibodies - metabolism ; Biological Techniques ; Cell Line, Tumor ; Cellular proteins ; Computational Biology/Bioinformatics ; Drug Carriers - chemistry ; Drug Carriers - metabolism ; Flow cytometry ; Fluorescence microscopy ; Gene expression ; Gene Knockdown Techniques - methods ; Genes ; Genetic engineering ; Growth factors ; Hematology ; Hospitals ; Humans ; Life Sciences ; Maleimides - chemistry ; Methods ; Mice ; Microarrays ; Microscopy ; Observations ; Oncology ; Organic Chemistry ; Peptides ; Properties ; Protamines - chemistry ; Protamines - metabolism ; Protocol ; Receptor, Epidermal Growth Factor - immunology ; RNA Interference ; RNA, Messenger - genetics ; RNA, Messenger - metabolism ; RNA, Small Interfering - chemistry ; RNA, Small Interfering - genetics ; RNA, Small Interfering - metabolism</subject><ispartof>Nature protocols, 2016-01, Vol.11 (1), p.22-36</ispartof><rights>Springer Nature Limited 2015</rights><rights>COPYRIGHT 2016 Nature Publishing Group</rights><rights>Copyright Nature Publishing Group Jan 2016</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c497t-14ef621425bf6a537cc2902233e127703336c0fac91b7647cb1855641d01863a3</citedby><cites>FETCH-LOGICAL-c497t-14ef621425bf6a537cc2902233e127703336c0fac91b7647cb1855641d01863a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1038/nprot.2015.137$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1038/nprot.2015.137$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26633129$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bäumer, Nicole</creatorcontrib><creatorcontrib>Appel, Neele</creatorcontrib><creatorcontrib>Terheyden, Lisa</creatorcontrib><creatorcontrib>Buchholz, Frank</creatorcontrib><creatorcontrib>Rossig, Claudia</creatorcontrib><creatorcontrib>Müller-Tidow, Carsten</creatorcontrib><creatorcontrib>Berdel, Wolfgang E</creatorcontrib><creatorcontrib>Bäumer, Sebastian</creatorcontrib><title>Antibody-coupled siRNA as an efficient method for in vivo mRNA knockdown</title><title>Nature protocols</title><addtitle>Nat Protoc</addtitle><addtitle>Nat Protoc</addtitle><description>This virus-free approach for mRNA knockdown
in vivo
uses the siRNA carrier peptide protamine, chemically coupled to a cell surface receptor internalizing antibodies via sulfo-SMCC, to provide protection and guidance for the targeted application of siRNA.
Knockdown of genes by RNA interference (RNAi)
in vitro
requires methods of transfection or transduction, both of which have limited impact
in vivo
. As a virus-free approach, we chemically coupled cell surface receptors internalizing antibodies to the short interfering RNA (siRNA) carrier peptide protamine using the bispecific cross-linker sulfo-SMCC (sulfosuccinimidyl 4-(
N
-maleimidomethyl)cyclohexane-1-carboxylate). First, protamine was conjugated amino-terminally to sulfo-SMCC, and then this conjugate was coupled via cysteine residues to the IgG backbone to carry siRNA. This complex can efficiently find, bind and internalize into receptor-positive cells
in vitro
and
in vivo
, which can be checked by flow cytometry, fluorescence microscopy and western blotting. This method obtains results similar to those of siRNA targeting molecules engineered by genetic fusions between receptor-binding and siRNA carrier units, with the advantage of using readily available purified proteins without the need for engineering, expression and purification of respective constructs. The procedure for coupling the complex takes ∼2 d, and the functional assays take ∼2 weeks.</description><subject>631/1647/1407/505</subject><subject>631/45/2783</subject><subject>631/61/2299</subject><subject>631/61/51/1568</subject><subject>Analytical Chemistry</subject><subject>Animals</subject><subject>Antibodies</subject><subject>Antibodies - chemistry</subject><subject>Antibodies - immunology</subject><subject>Antibodies - metabolism</subject><subject>Biological Techniques</subject><subject>Cell Line, Tumor</subject><subject>Cellular proteins</subject><subject>Computational Biology/Bioinformatics</subject><subject>Drug Carriers - chemistry</subject><subject>Drug Carriers - metabolism</subject><subject>Flow cytometry</subject><subject>Fluorescence microscopy</subject><subject>Gene expression</subject><subject>Gene Knockdown Techniques - methods</subject><subject>Genes</subject><subject>Genetic engineering</subject><subject>Growth factors</subject><subject>Hematology</subject><subject>Hospitals</subject><subject>Humans</subject><subject>Life Sciences</subject><subject>Maleimides - chemistry</subject><subject>Methods</subject><subject>Mice</subject><subject>Microarrays</subject><subject>Microscopy</subject><subject>Observations</subject><subject>Oncology</subject><subject>Organic Chemistry</subject><subject>Peptides</subject><subject>Properties</subject><subject>Protamines - chemistry</subject><subject>Protamines - metabolism</subject><subject>Protocol</subject><subject>Receptor, Epidermal Growth Factor - immunology</subject><subject>RNA Interference</subject><subject>RNA, Messenger - genetics</subject><subject>RNA, Messenger - metabolism</subject><subject>RNA, Small Interfering - chemistry</subject><subject>RNA, Small Interfering - genetics</subject><subject>RNA, Small Interfering - metabolism</subject><issn>1754-2189</issn><issn>1750-2799</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNkkFvFSEUhYnR2FrdujSTuNHFvHKBgZnlS1Ntk6YmVdeEYeBJOwNPYKr99zJttda8hbkLbi7fOclJDkKvAa8A0_bQb2PIK4KhWQEVT9A-iAbXRHTd09ud1QTabg-9SOkSYyYoF8_RHuGcUiDdPjpZ--z6MNzUOszb0QxVchfn60qlSvnKWOu0Mz5Xk8nfwlDZECvnq2t3Happ4a580FdD-OFfomdWjcm8un8P0NcPx1-OTuqzTx9Pj9ZntWadyDUwYzkBRprectVQoTXpMCGUGiBCYEop19gq3UEvOBO6h7ZpOIMBQ8upogfo3Z1vCf59NinLySVtxlF5E-YkQQjaEsYE_AfKGOeEkragb_9BL8McfQmyUB1wILh5oDZqNNJ5G3JUejGVa0a7ljIKrFCrHVSZwUxOB2-sK_dHgvePBIXJ5mfeqDklefr5Yqe5jiGlaKzcRjepeCMBy6UR8rYRcmmELI0ogjf3yeZ-MsMf_HcFCnB4B6Ty5Tcm_hV9t-UvhDO7vQ</recordid><startdate>20160101</startdate><enddate>20160101</enddate><creator>Bäumer, Nicole</creator><creator>Appel, Neele</creator><creator>Terheyden, Lisa</creator><creator>Buchholz, Frank</creator><creator>Rossig, Claudia</creator><creator>Müller-Tidow, Carsten</creator><creator>Berdel, Wolfgang E</creator><creator>Bäumer, Sebastian</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7T5</scope><scope>7T7</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>7U9</scope></search><sort><creationdate>20160101</creationdate><title>Antibody-coupled siRNA as an efficient method for in vivo mRNA knockdown</title><author>Bäumer, Nicole ; Appel, Neele ; Terheyden, Lisa ; Buchholz, Frank ; Rossig, Claudia ; Müller-Tidow, Carsten ; Berdel, Wolfgang E ; Bäumer, Sebastian</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c497t-14ef621425bf6a537cc2902233e127703336c0fac91b7647cb1855641d01863a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>631/1647/1407/505</topic><topic>631/45/2783</topic><topic>631/61/2299</topic><topic>631/61/51/1568</topic><topic>Analytical Chemistry</topic><topic>Animals</topic><topic>Antibodies</topic><topic>Antibodies - 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Academic</collection><collection>Virology and AIDS Abstracts</collection><jtitle>Nature protocols</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bäumer, Nicole</au><au>Appel, Neele</au><au>Terheyden, Lisa</au><au>Buchholz, Frank</au><au>Rossig, Claudia</au><au>Müller-Tidow, Carsten</au><au>Berdel, Wolfgang E</au><au>Bäumer, Sebastian</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Antibody-coupled siRNA as an efficient method for in vivo mRNA knockdown</atitle><jtitle>Nature protocols</jtitle><stitle>Nat Protoc</stitle><addtitle>Nat Protoc</addtitle><date>2016-01-01</date><risdate>2016</risdate><volume>11</volume><issue>1</issue><spage>22</spage><epage>36</epage><pages>22-36</pages><issn>1754-2189</issn><eissn>1750-2799</eissn><abstract>This virus-free approach for mRNA knockdown
in vivo
uses the siRNA carrier peptide protamine, chemically coupled to a cell surface receptor internalizing antibodies via sulfo-SMCC, to provide protection and guidance for the targeted application of siRNA.
Knockdown of genes by RNA interference (RNAi)
in vitro
requires methods of transfection or transduction, both of which have limited impact
in vivo
. As a virus-free approach, we chemically coupled cell surface receptors internalizing antibodies to the short interfering RNA (siRNA) carrier peptide protamine using the bispecific cross-linker sulfo-SMCC (sulfosuccinimidyl 4-(
N
-maleimidomethyl)cyclohexane-1-carboxylate). First, protamine was conjugated amino-terminally to sulfo-SMCC, and then this conjugate was coupled via cysteine residues to the IgG backbone to carry siRNA. This complex can efficiently find, bind and internalize into receptor-positive cells
in vitro
and
in vivo
, which can be checked by flow cytometry, fluorescence microscopy and western blotting. This method obtains results similar to those of siRNA targeting molecules engineered by genetic fusions between receptor-binding and siRNA carrier units, with the advantage of using readily available purified proteins without the need for engineering, expression and purification of respective constructs. The procedure for coupling the complex takes ∼2 d, and the functional assays take ∼2 weeks.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>26633129</pmid><doi>10.1038/nprot.2015.137</doi><tpages>15</tpages></addata></record> |
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subjects | 631/1647/1407/505 631/45/2783 631/61/2299 631/61/51/1568 Analytical Chemistry Animals Antibodies Antibodies - chemistry Antibodies - immunology Antibodies - metabolism Biological Techniques Cell Line, Tumor Cellular proteins Computational Biology/Bioinformatics Drug Carriers - chemistry Drug Carriers - metabolism Flow cytometry Fluorescence microscopy Gene expression Gene Knockdown Techniques - methods Genes Genetic engineering Growth factors Hematology Hospitals Humans Life Sciences Maleimides - chemistry Methods Mice Microarrays Microscopy Observations Oncology Organic Chemistry Peptides Properties Protamines - chemistry Protamines - metabolism Protocol Receptor, Epidermal Growth Factor - immunology RNA Interference RNA, Messenger - genetics RNA, Messenger - metabolism RNA, Small Interfering - chemistry RNA, Small Interfering - genetics RNA, Small Interfering - metabolism |
title | Antibody-coupled siRNA as an efficient method for in vivo mRNA knockdown |
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