Flavobacterium paronense sp. nov., isolated from freshwater of an artificial vegetated island
A Gram-stain-negative, motile by gliding, yellow-pigmented bacterial strain, designated KNUS1T, was isolated from Lake Paro in Korea. The phylogenetic tree based on 16S rRNA gene sequences showed that strain KNUS1T formed a distinct lineage within the genus Flavobacterium. Strain KNUS1T was closely...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2016-01, Vol.66 (1), p.365-370 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Joung, Yochan Kang, Heeyoung Kim, Haneul Kim, Tae-Su Han, Ji-Hye Kim, Seung Bum Ahn, Tae-Seok Joh, Kiseong |
| description | A Gram-stain-negative, motile by gliding, yellow-pigmented bacterial strain, designated KNUS1T, was isolated from Lake Paro in Korea. The phylogenetic tree based on 16S rRNA gene sequences showed that strain KNUS1T formed a distinct lineage within the genus Flavobacterium. Strain KNUS1T was closely related to Flavobacterium cheonhonense ARSA-15T (96.8 %16S rRNA gene sequence similarity), Flavobacterium pectinovorum DSM 6368T (96.3 %) and Flavobacterium dankookense ARSA-19T (96.1 %). The major fatty acids of strain KNUS1T were iso-C15 : 0 and iso-C15 : 1 G. The major polyamine was sym-homospermidine. The major polar lipids of strain KNUS1T were phosphatidylethanolamine, five unidentified aminolipids and three unidentified polar lipids. The major respiratory'quinone was menaquinone 6 (MK-6). The DNA G+C content of strain KNUS1T was 34.2 mol%. On the basis of the evidence presented in this study, strain KNUS1T represents a novel species of the genus Flavobacterium, for which the name Flavobacterium paronense sp. nov. is proposed. The type strain is KNUS1T ( = KACC 17692T = CECT 8460T). |
| doi_str_mv | 10.1099/ijsem.0.000727 |
| format | Article |
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The phylogenetic tree based on 16S rRNA gene sequences showed that strain KNUS1T formed a distinct lineage within the genus Flavobacterium. Strain KNUS1T was closely related to Flavobacterium cheonhonense ARSA-15T (96.8 %16S rRNA gene sequence similarity), Flavobacterium pectinovorum DSM 6368T (96.3 %) and Flavobacterium dankookense ARSA-19T (96.1 %). The major fatty acids of strain KNUS1T were iso-C15 : 0 and iso-C15 : 1 G. The major polyamine was sym-homospermidine. The major polar lipids of strain KNUS1T were phosphatidylethanolamine, five unidentified aminolipids and three unidentified polar lipids. The major respiratory'quinone was menaquinone 6 (MK-6). The DNA G+C content of strain KNUS1T was 34.2 mol%. On the basis of the evidence presented in this study, strain KNUS1T represents a novel species of the genus Flavobacterium, for which the name Flavobacterium paronense sp. nov. is proposed. The type strain is KNUS1T ( = KACC 17692T = CECT 8460T).</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.000727</identifier><identifier>PMID: 26530258</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Flavobacterium - classification ; Flavobacterium - genetics ; Flavobacterium - isolation & purification ; Fresh Water - microbiology ; Islands ; Molecular Sequence Data ; Phospholipids - chemistry ; Phylogeny ; Republic of Korea ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Spermidine - analogs & derivatives ; Spermidine - chemistry ; Vitamin K 2 - analogs & derivatives ; Vitamin K 2 - chemistry</subject><ispartof>International journal of systematic and evolutionary microbiology, 2016-01, Vol.66 (1), p.365-370</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c335t-e286d22ea02f481c5d9161585b99644d8b98d84e9ce972c6cda743b15f0aaa6e3</citedby><cites>FETCH-LOGICAL-c335t-e286d22ea02f481c5d9161585b99644d8b98d84e9ce972c6cda743b15f0aaa6e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26530258$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Joung, Yochan</creatorcontrib><creatorcontrib>Kang, Heeyoung</creatorcontrib><creatorcontrib>Kim, Haneul</creatorcontrib><creatorcontrib>Kim, Tae-Su</creatorcontrib><creatorcontrib>Han, Ji-Hye</creatorcontrib><creatorcontrib>Kim, Seung Bum</creatorcontrib><creatorcontrib>Ahn, Tae-Seok</creatorcontrib><creatorcontrib>Joh, Kiseong</creatorcontrib><title>Flavobacterium paronense sp. nov., isolated from freshwater of an artificial vegetated island</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>A Gram-stain-negative, motile by gliding, yellow-pigmented bacterial strain, designated KNUS1T, was isolated from Lake Paro in Korea. The phylogenetic tree based on 16S rRNA gene sequences showed that strain KNUS1T formed a distinct lineage within the genus Flavobacterium. Strain KNUS1T was closely related to Flavobacterium cheonhonense ARSA-15T (96.8 %16S rRNA gene sequence similarity), Flavobacterium pectinovorum DSM 6368T (96.3 %) and Flavobacterium dankookense ARSA-19T (96.1 %). The major fatty acids of strain KNUS1T were iso-C15 : 0 and iso-C15 : 1 G. The major polyamine was sym-homospermidine. The major polar lipids of strain KNUS1T were phosphatidylethanolamine, five unidentified aminolipids and three unidentified polar lipids. The major respiratory'quinone was menaquinone 6 (MK-6). The DNA G+C content of strain KNUS1T was 34.2 mol%. On the basis of the evidence presented in this study, strain KNUS1T represents a novel species of the genus Flavobacterium, for which the name Flavobacterium paronense sp. nov. is proposed. The type strain is KNUS1T ( = KACC 17692T = CECT 8460T).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Flavobacterium - classification</subject><subject>Flavobacterium - genetics</subject><subject>Flavobacterium - isolation & purification</subject><subject>Fresh Water - microbiology</subject><subject>Islands</subject><subject>Molecular Sequence Data</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>Republic of Korea</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Spermidine - analogs & derivatives</subject><subject>Spermidine - chemistry</subject><subject>Vitamin K 2 - analogs & derivatives</subject><subject>Vitamin K 2 - chemistry</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kD1PwzAQQC0EoqWwMiKPDDScHduJR4QoIFVigRFFjnMBV0lc7KSIf09oS5f70rvT6RFyySBhoPWtW0VsE0gAIOPZEZkyodRcQiqODzVXE3IW4wpgHACckglXMgUu8yl5XzRm40tjewxuaOnaBN9hF5HGdUI7v0luqIu-MT1WtA6-HQPGz--xD9TX1HTUhN7VzjrT0A1-YL9FXWxMV52Tk9o0ES_2eUbeFg-v90_z5cvj8_3dcm7TVPZz5LmqOEcDvBY5s7LSTDGZy1JrJUSVlzqvcoHaos64VbYymUhLJmswxihMZ-R6d3cd_NeAsS9aFy024w_oh1iwTEnGQAg9oskOtcHHGLAu1sG1JvwUDIo_pcVWaQHFTum4cLW_PZQtVgf832H6CxiCc20</recordid><startdate>201601</startdate><enddate>201601</enddate><creator>Joung, Yochan</creator><creator>Kang, Heeyoung</creator><creator>Kim, Haneul</creator><creator>Kim, Tae-Su</creator><creator>Han, Ji-Hye</creator><creator>Kim, Seung Bum</creator><creator>Ahn, Tae-Seok</creator><creator>Joh, Kiseong</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>201601</creationdate><title>Flavobacterium paronense sp. nov., isolated from freshwater of an artificial vegetated island</title><author>Joung, Yochan ; Kang, Heeyoung ; Kim, Haneul ; Kim, Tae-Su ; Han, Ji-Hye ; Kim, Seung Bum ; Ahn, Tae-Seok ; Joh, Kiseong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-e286d22ea02f481c5d9161585b99644d8b98d84e9ce972c6cda743b15f0aaa6e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Flavobacterium - classification</topic><topic>Flavobacterium - genetics</topic><topic>Flavobacterium - isolation & purification</topic><topic>Fresh Water - microbiology</topic><topic>Islands</topic><topic>Molecular Sequence Data</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>Republic of Korea</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Spermidine - analogs & derivatives</topic><topic>Spermidine - chemistry</topic><topic>Vitamin K 2 - analogs & derivatives</topic><topic>Vitamin K 2 - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Joung, Yochan</creatorcontrib><creatorcontrib>Kang, Heeyoung</creatorcontrib><creatorcontrib>Kim, Haneul</creatorcontrib><creatorcontrib>Kim, Tae-Su</creatorcontrib><creatorcontrib>Han, Ji-Hye</creatorcontrib><creatorcontrib>Kim, Seung Bum</creatorcontrib><creatorcontrib>Ahn, Tae-Seok</creatorcontrib><creatorcontrib>Joh, Kiseong</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Joung, Yochan</au><au>Kang, Heeyoung</au><au>Kim, Haneul</au><au>Kim, Tae-Su</au><au>Han, Ji-Hye</au><au>Kim, Seung Bum</au><au>Ahn, Tae-Seok</au><au>Joh, Kiseong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Flavobacterium paronense sp. nov., isolated from freshwater of an artificial vegetated island</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2016-01</date><risdate>2016</risdate><volume>66</volume><issue>1</issue><spage>365</spage><epage>370</epage><pages>365-370</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>A Gram-stain-negative, motile by gliding, yellow-pigmented bacterial strain, designated KNUS1T, was isolated from Lake Paro in Korea. The phylogenetic tree based on 16S rRNA gene sequences showed that strain KNUS1T formed a distinct lineage within the genus Flavobacterium. Strain KNUS1T was closely related to Flavobacterium cheonhonense ARSA-15T (96.8 %16S rRNA gene sequence similarity), Flavobacterium pectinovorum DSM 6368T (96.3 %) and Flavobacterium dankookense ARSA-19T (96.1 %). The major fatty acids of strain KNUS1T were iso-C15 : 0 and iso-C15 : 1 G. The major polyamine was sym-homospermidine. The major polar lipids of strain KNUS1T were phosphatidylethanolamine, five unidentified aminolipids and three unidentified polar lipids. The major respiratory'quinone was menaquinone 6 (MK-6). The DNA G+C content of strain KNUS1T was 34.2 mol%. On the basis of the evidence presented in this study, strain KNUS1T represents a novel species of the genus Flavobacterium, for which the name Flavobacterium paronense sp. nov. is proposed. 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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition DNA, Bacterial - genetics Fatty Acids - chemistry Flavobacterium - classification Flavobacterium - genetics Flavobacterium - isolation & purification Fresh Water - microbiology Islands Molecular Sequence Data Phospholipids - chemistry Phylogeny Republic of Korea RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Spermidine - analogs & derivatives Spermidine - chemistry Vitamin K 2 - analogs & derivatives Vitamin K 2 - chemistry |
| title | Flavobacterium paronense sp. nov., isolated from freshwater of an artificial vegetated island |
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