Examining the limits of cellular adaptation bursting mechanisms in biologically-based excitatory networks of the hippocampus
Determining the biological details and mechanisms that are essential for the generation of population rhythms in the mammalian brain is a challenging problem. This problem cannot be addressed either by experimental or computational studies in isolation. Here we show that computational models that ar...
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Veröffentlicht in: | Journal of computational neuroscience 2015-12, Vol.39 (3), p.289-309 |
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creator | Ferguson, K. A. Njap, F. Nicola, W. Skinner, F. K. Campbell, S. A. |
description | Determining the biological details and mechanisms that are essential for the generation of population rhythms in the mammalian brain is a challenging problem. This problem cannot be addressed either by experimental or computational studies in isolation. Here we show that computational models that are carefully linked with experiment provide insight into this problem. Using the experimental context of a whole hippocampus preparation
in vitro
that spontaneously expresses theta frequency (3–12 Hz) population bursts in the CA1 region, we create excitatory network models to examine whether cellular adaptation bursting mechanisms could critically contribute to the generation of this rhythm. We use biologically-based cellular models of CA1 pyramidal cells and network sizes and connectivities that correspond to the experimental context. By expanding our mean field analyses to networks with heterogeneity and non all-to-all coupling, we allow closer correspondence with experiment, and use these analyses to greatly extend the range of parameter values that are explored. We find that our model excitatory networks can produce theta frequency population bursts in a robust fashion.Thus, even though our networks are limited by not including inhibition at present, our results indicate that cellular adaptation in pyramidal cells could be an important aspect for the occurrence of theta frequency population bursting in the hippocampus. These models serve as a starting framework for the inclusion of inhibitory cells and for the consideration of additional experimental features not captured in our present network models. |
doi_str_mv | 10.1007/s10827-015-0577-1 |
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in vitro
that spontaneously expresses theta frequency (3–12 Hz) population bursts in the CA1 region, we create excitatory network models to examine whether cellular adaptation bursting mechanisms could critically contribute to the generation of this rhythm. We use biologically-based cellular models of CA1 pyramidal cells and network sizes and connectivities that correspond to the experimental context. By expanding our mean field analyses to networks with heterogeneity and non all-to-all coupling, we allow closer correspondence with experiment, and use these analyses to greatly extend the range of parameter values that are explored. We find that our model excitatory networks can produce theta frequency population bursts in a robust fashion.Thus, even though our networks are limited by not including inhibition at present, our results indicate that cellular adaptation in pyramidal cells could be an important aspect for the occurrence of theta frequency population bursting in the hippocampus. These models serve as a starting framework for the inclusion of inhibitory cells and for the consideration of additional experimental features not captured in our present network models.</description><identifier>ISSN: 0929-5313</identifier><identifier>EISSN: 1573-6873</identifier><identifier>DOI: 10.1007/s10827-015-0577-1</identifier><identifier>PMID: 26464038</identifier><identifier>CODEN: JCNEFR</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Action Potentials - physiology ; Adaptation, Physiological - physiology ; Animals ; Biomedical and Life Sciences ; Biomedicine ; CA1 Region, Hippocampal - physiology ; Computer Simulation ; Human Genetics ; Mathematical Concepts ; Models, Neurological ; Nerve Net - physiology ; Neural Networks (Computer) ; Neurology ; Neurosciences ; Pyramidal Cells - physiology ; Rats ; Theory of Computation ; Theta Rhythm - physiology</subject><ispartof>Journal of computational neuroscience, 2015-12, Vol.39 (3), p.289-309</ispartof><rights>Springer Science+Business Media New York 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c475t-28fa9c35714aae2e78aa3f3c20f8cc82fc83736ad66f18169c19b0fd30e8608d3</citedby><cites>FETCH-LOGICAL-c475t-28fa9c35714aae2e78aa3f3c20f8cc82fc83736ad66f18169c19b0fd30e8608d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10827-015-0577-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10827-015-0577-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27922,27923,41486,42555,51317</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26464038$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ferguson, K. A.</creatorcontrib><creatorcontrib>Njap, F.</creatorcontrib><creatorcontrib>Nicola, W.</creatorcontrib><creatorcontrib>Skinner, F. K.</creatorcontrib><creatorcontrib>Campbell, S. A.</creatorcontrib><title>Examining the limits of cellular adaptation bursting mechanisms in biologically-based excitatory networks of the hippocampus</title><title>Journal of computational neuroscience</title><addtitle>J Comput Neurosci</addtitle><addtitle>J Comput Neurosci</addtitle><description>Determining the biological details and mechanisms that are essential for the generation of population rhythms in the mammalian brain is a challenging problem. This problem cannot be addressed either by experimental or computational studies in isolation. Here we show that computational models that are carefully linked with experiment provide insight into this problem. Using the experimental context of a whole hippocampus preparation
in vitro
that spontaneously expresses theta frequency (3–12 Hz) population bursts in the CA1 region, we create excitatory network models to examine whether cellular adaptation bursting mechanisms could critically contribute to the generation of this rhythm. We use biologically-based cellular models of CA1 pyramidal cells and network sizes and connectivities that correspond to the experimental context. By expanding our mean field analyses to networks with heterogeneity and non all-to-all coupling, we allow closer correspondence with experiment, and use these analyses to greatly extend the range of parameter values that are explored. We find that our model excitatory networks can produce theta frequency population bursts in a robust fashion.Thus, even though our networks are limited by not including inhibition at present, our results indicate that cellular adaptation in pyramidal cells could be an important aspect for the occurrence of theta frequency population bursting in the hippocampus. These models serve as a starting framework for the inclusion of inhibitory cells and for the consideration of additional experimental features not captured in our present network models.</description><subject>Action Potentials - physiology</subject><subject>Adaptation, Physiological - physiology</subject><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>CA1 Region, Hippocampal - physiology</subject><subject>Computer Simulation</subject><subject>Human Genetics</subject><subject>Mathematical Concepts</subject><subject>Models, Neurological</subject><subject>Nerve Net - physiology</subject><subject>Neural Networks (Computer)</subject><subject>Neurology</subject><subject>Neurosciences</subject><subject>Pyramidal Cells - physiology</subject><subject>Rats</subject><subject>Theory of Computation</subject><subject>Theta Rhythm - physiology</subject><issn>0929-5313</issn><issn>1573-6873</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkcFqFTEUhoNY7LXtA7iRATduouckM0lmKaW1QsGNXYfcTHJv6sxkTGawF3x4M71VRBBcBZLv_w8nHyGvEN4hgHyfERSTFLCh0EhJ8RnZYCM5FUry52QDLWtpw5Gfkpc53wOAkggvyCkTtaiBqw35cfVghjCGcVfNe1f1YQhzrqKvrOv7pTepMp2ZZjOHOFbbJeV5RQdn92YMechVKNch9nEXrOn7A92a7LrKPdhQQjEdqtHN32P6-li6jtiHaYrWDNOSz8mJN312F0_nGbm7vvpyeUNvP3_8dPnhltpaNjNlypvW8kZibYxjTipjuOeWgVfWKuat4pIL0wnhUaFoLbZb8B0HpwSojp-Rt8feKcVvi8uzHkJeFzSji0vWKMt_tK2Q6j_QBhlKUE1B3_yF3scljWWRQnGuRK1wpfBI2RRzTs7rKYXBpING0KtFfbSoi0W9WtRYMq-fmpft4LrfiV_aCsCOQC5P486lP0b_s_Uno42pcg</recordid><startdate>20151201</startdate><enddate>20151201</enddate><creator>Ferguson, K. 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A.</au><au>Njap, F.</au><au>Nicola, W.</au><au>Skinner, F. K.</au><au>Campbell, S. A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Examining the limits of cellular adaptation bursting mechanisms in biologically-based excitatory networks of the hippocampus</atitle><jtitle>Journal of computational neuroscience</jtitle><stitle>J Comput Neurosci</stitle><addtitle>J Comput Neurosci</addtitle><date>2015-12-01</date><risdate>2015</risdate><volume>39</volume><issue>3</issue><spage>289</spage><epage>309</epage><pages>289-309</pages><issn>0929-5313</issn><eissn>1573-6873</eissn><coden>JCNEFR</coden><abstract>Determining the biological details and mechanisms that are essential for the generation of population rhythms in the mammalian brain is a challenging problem. This problem cannot be addressed either by experimental or computational studies in isolation. Here we show that computational models that are carefully linked with experiment provide insight into this problem. Using the experimental context of a whole hippocampus preparation
in vitro
that spontaneously expresses theta frequency (3–12 Hz) population bursts in the CA1 region, we create excitatory network models to examine whether cellular adaptation bursting mechanisms could critically contribute to the generation of this rhythm. We use biologically-based cellular models of CA1 pyramidal cells and network sizes and connectivities that correspond to the experimental context. By expanding our mean field analyses to networks with heterogeneity and non all-to-all coupling, we allow closer correspondence with experiment, and use these analyses to greatly extend the range of parameter values that are explored. We find that our model excitatory networks can produce theta frequency population bursts in a robust fashion.Thus, even though our networks are limited by not including inhibition at present, our results indicate that cellular adaptation in pyramidal cells could be an important aspect for the occurrence of theta frequency population bursting in the hippocampus. These models serve as a starting framework for the inclusion of inhibitory cells and for the consideration of additional experimental features not captured in our present network models.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>26464038</pmid><doi>10.1007/s10827-015-0577-1</doi><tpages>21</tpages></addata></record> |
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subjects | Action Potentials - physiology Adaptation, Physiological - physiology Animals Biomedical and Life Sciences Biomedicine CA1 Region, Hippocampal - physiology Computer Simulation Human Genetics Mathematical Concepts Models, Neurological Nerve Net - physiology Neural Networks (Computer) Neurology Neurosciences Pyramidal Cells - physiology Rats Theory of Computation Theta Rhythm - physiology |
title | Examining the limits of cellular adaptation bursting mechanisms in biologically-based excitatory networks of the hippocampus |
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