Paucibacter toxinivorans gen. nov., sp. nov., a bacterium that degrades cyclic cyanobacterial hepatotoxins microcystins and nodularin
1 Finnish Environment Institute, PO Box 140, FIN-00251 Helsinki, Finland 2 Fachgebiet Ökologie der Mikroorganismen, Institut für Technischen Umweltschutz, Technische Universität Berlin, D-10587 Berlin, Germany 3 Institute of Biotechnology, PO Box 56, FIN-00014 University of Helsinki, Finland Corresp...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2005-07, Vol.55 (4), p.1563-1568 |
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| creator | Rapala, Jarkko Berg, Katri A Lyra, Christina Niemi, R. Maarit Manz, Werner Suomalainen, Sini Paulin, Lars Lahti, Kirsti |
| description | 1 Finnish Environment Institute, PO Box 140, FIN-00251 Helsinki, Finland
2 Fachgebiet Ökologie der Mikroorganismen, Institut für Technischen Umweltschutz, Technische Universität Berlin, D-10587 Berlin, Germany
3 Institute of Biotechnology, PO Box 56, FIN-00014 University of Helsinki, Finland
Correspondence Jarkko Rapala jarkko.rapala{at}sttv.fi
Thirteen bacterial isolates from lake sediment, capable of degrading cyanobacterial hepatotoxins microcystins and nodularin, were characterized by phenotypic, genetic and genomic approaches. Cells of these isolates were Gram-negative, motile by means of a single polar flagellum, oxidase-positive, weakly catalase-positive and rod-shaped. According to phenotypic characteristics (carbon utilization, fatty acid and enzyme activity profiles), the G+C content of the genomic DNA (66·168·0 mol%) and 16S rRNA gene sequence analysis (98·9100 % similarity) the strains formed a single microdiverse genospecies that was most closely related to Roseateles depolymerans (95·796·3 % 16S rRNA gene sequence similarity). The isolates assimilated only a few carbon sources. Of the 96 carbon sources tested, Tween 40 was the only one used by all strains. The strains were able to mineralize phosphorus from organic compounds, and they had strong leucine arylamidase and chymotrypsin activities. The cellular fatty acids identified from all strains were C 16 : 0 (9·819 %) and C 17 : 1 7 c ( |
| doi_str_mv | 10.1099/ijs.0.63599-0 |
| format | Article |
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2 Fachgebiet Ökologie der Mikroorganismen, Institut für Technischen Umweltschutz, Technische Universität Berlin, D-10587 Berlin, Germany
3 Institute of Biotechnology, PO Box 56, FIN-00014 University of Helsinki, Finland
Correspondence Jarkko Rapala jarkko.rapala{at}sttv.fi
Thirteen bacterial isolates from lake sediment, capable of degrading cyanobacterial hepatotoxins microcystins and nodularin, were characterized by phenotypic, genetic and genomic approaches. Cells of these isolates were Gram-negative, motile by means of a single polar flagellum, oxidase-positive, weakly catalase-positive and rod-shaped. According to phenotypic characteristics (carbon utilization, fatty acid and enzyme activity profiles), the G+C content of the genomic DNA (66·168·0 mol%) and 16S rRNA gene sequence analysis (98·9100 % similarity) the strains formed a single microdiverse genospecies that was most closely related to Roseateles depolymerans (95·796·3 % 16S rRNA gene sequence similarity). The isolates assimilated only a few carbon sources. Of the 96 carbon sources tested, Tween 40 was the only one used by all strains. The strains were able to mineralize phosphorus from organic compounds, and they had strong leucine arylamidase and chymotrypsin activities. The cellular fatty acids identified from all strains were C 16 : 0 (9·819 %) and C 17 : 1 7 c (<15·8 %). The other predominant fatty acids comprised three groups: summed feature 3 (<12·2 %), which included C 14 : 0 3-OH and C 16 : 1 iso I, summed feature 4 (5462 %), which included C 16 : 1 7 c and C 15 : 0 iso OH, and summed feature 7 (8·528 %), which included 7 c , 9 c and 12 t forms of C 18 : 1 . A more detailed analysis of two strains indicated that C 16 : 1 7 c was the main fatty acid. The phylogenetic and phenotypic features separating our strains from recognized bacteria support the creation of a novel genus and species, for which the name Paucibacter toxinivorans gen. nov., sp. nov. is proposed. The type strain is 2C20 T (=DSM 16998 T =HAMBI 2767 T =VYH 193597 T ).
Abbreviations: BChl a , bacteriochlorophyll a ; MP, maximum parsimony; NJ, neighbour joining; PHC, poly(hexamethylene carbonate)
Published online ahead of print on 14 March 2005 as DOI 10.1099/ijs.0.63599-0.
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains 15B, 2, 2B15, 2B17, 2B3, S1030, G44, F39, F36, 7A, 2C23, 2C20 T and 2B5 are AY515379 AY515391, respectively.
Physiological characteristics and whole-cell fatty acid profiles of the strains investigated here are detailed in supplementary tables available in IJSEM Online.
Present address: National Product Control Agency for Welfare and Health, PO Box 210, FIN-00531 Helsinki, Finland.
Present address: Bundesanstalt für Gewässerkunde, Postfach 20 02 53, D-56002 Koblenz, Germany.
Present address: The Water Protection Association of the River Vantaa and Helsinki Region, Asemapäällikönkatu 12 C, FIN-00520 Helsinki, Finland.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijs.0.63599-0</identifier><identifier>PMID: 16014482</identifier><language>eng</language><publisher>Reading: Soc General Microbiol</publisher><subject>Bacterial Toxins - metabolism ; Bacteriology ; Betaproteobacteria - chemistry ; Betaproteobacteria - classification ; Betaproteobacteria - genetics ; Betaproteobacteria - metabolism ; Biodegradation, Environmental ; Biological and medical sciences ; Cyanobacteria - metabolism ; Cyanobacteria - pathogenicity ; DNA, Bacterial - analysis ; DNA, Ribosomal - analysis ; Fresh Water - microbiology ; Freshwater ; Fundamental and applied biological sciences. Psychology ; Genes, rRNA ; Geologic Sediments - microbiology ; Microbiology ; Microcystins ; Miscellaneous ; Molecular Sequence Data ; Peptides, Cyclic - metabolism ; Phenotype ; Phylogeny ; RNA, Ribosomal, 16S ; Sequence Analysis, DNA ; Species Specificity ; Systematics</subject><ispartof>International journal of systematic and evolutionary microbiology, 2005-07, Vol.55 (4), p.1563-1568</ispartof><rights>2006 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c424t-bd418488ac2d97c664b21e8e937ee7fe38fcf2b718888164482fa86c4abb1f643</citedby><cites>FETCH-LOGICAL-c424t-bd418488ac2d97c664b21e8e937ee7fe38fcf2b718888164482fa86c4abb1f643</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3732,3733,27902,27903</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=16945241$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16014482$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Rapala, Jarkko</creatorcontrib><creatorcontrib>Berg, Katri A</creatorcontrib><creatorcontrib>Lyra, Christina</creatorcontrib><creatorcontrib>Niemi, R. Maarit</creatorcontrib><creatorcontrib>Manz, Werner</creatorcontrib><creatorcontrib>Suomalainen, Sini</creatorcontrib><creatorcontrib>Paulin, Lars</creatorcontrib><creatorcontrib>Lahti, Kirsti</creatorcontrib><title>Paucibacter toxinivorans gen. nov., sp. nov., a bacterium that degrades cyclic cyanobacterial hepatotoxins microcystins and nodularin</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>1 Finnish Environment Institute, PO Box 140, FIN-00251 Helsinki, Finland
2 Fachgebiet Ökologie der Mikroorganismen, Institut für Technischen Umweltschutz, Technische Universität Berlin, D-10587 Berlin, Germany
3 Institute of Biotechnology, PO Box 56, FIN-00014 University of Helsinki, Finland
Correspondence Jarkko Rapala jarkko.rapala{at}sttv.fi
Thirteen bacterial isolates from lake sediment, capable of degrading cyanobacterial hepatotoxins microcystins and nodularin, were characterized by phenotypic, genetic and genomic approaches. Cells of these isolates were Gram-negative, motile by means of a single polar flagellum, oxidase-positive, weakly catalase-positive and rod-shaped. According to phenotypic characteristics (carbon utilization, fatty acid and enzyme activity profiles), the G+C content of the genomic DNA (66·168·0 mol%) and 16S rRNA gene sequence analysis (98·9100 % similarity) the strains formed a single microdiverse genospecies that was most closely related to Roseateles depolymerans (95·796·3 % 16S rRNA gene sequence similarity). The isolates assimilated only a few carbon sources. Of the 96 carbon sources tested, Tween 40 was the only one used by all strains. The strains were able to mineralize phosphorus from organic compounds, and they had strong leucine arylamidase and chymotrypsin activities. The cellular fatty acids identified from all strains were C 16 : 0 (9·819 %) and C 17 : 1 7 c (<15·8 %). The other predominant fatty acids comprised three groups: summed feature 3 (<12·2 %), which included C 14 : 0 3-OH and C 16 : 1 iso I, summed feature 4 (5462 %), which included C 16 : 1 7 c and C 15 : 0 iso OH, and summed feature 7 (8·528 %), which included 7 c , 9 c and 12 t forms of C 18 : 1 . A more detailed analysis of two strains indicated that C 16 : 1 7 c was the main fatty acid. The phylogenetic and phenotypic features separating our strains from recognized bacteria support the creation of a novel genus and species, for which the name Paucibacter toxinivorans gen. nov., sp. nov. is proposed. The type strain is 2C20 T (=DSM 16998 T =HAMBI 2767 T =VYH 193597 T ).
Abbreviations: BChl a , bacteriochlorophyll a ; MP, maximum parsimony; NJ, neighbour joining; PHC, poly(hexamethylene carbonate)
Published online ahead of print on 14 March 2005 as DOI 10.1099/ijs.0.63599-0.
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains 15B, 2, 2B15, 2B17, 2B3, S1030, G44, F39, F36, 7A, 2C23, 2C20 T and 2B5 are AY515379 AY515391, respectively.
Physiological characteristics and whole-cell fatty acid profiles of the strains investigated here are detailed in supplementary tables available in IJSEM Online.
Present address: National Product Control Agency for Welfare and Health, PO Box 210, FIN-00531 Helsinki, Finland.
Present address: Bundesanstalt für Gewässerkunde, Postfach 20 02 53, D-56002 Koblenz, Germany.
Present address: The Water Protection Association of the River Vantaa and Helsinki Region, Asemapäällikönkatu 12 C, FIN-00520 Helsinki, Finland.</description><subject>Bacterial Toxins - metabolism</subject><subject>Bacteriology</subject><subject>Betaproteobacteria - chemistry</subject><subject>Betaproteobacteria - classification</subject><subject>Betaproteobacteria - genetics</subject><subject>Betaproteobacteria - metabolism</subject><subject>Biodegradation, Environmental</subject><subject>Biological and medical sciences</subject><subject>Cyanobacteria - metabolism</subject><subject>Cyanobacteria - pathogenicity</subject><subject>DNA, Bacterial - analysis</subject><subject>DNA, Ribosomal - analysis</subject><subject>Fresh Water - microbiology</subject><subject>Freshwater</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genes, rRNA</subject><subject>Geologic Sediments - microbiology</subject><subject>Microbiology</subject><subject>Microcystins</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Peptides, Cyclic - metabolism</subject><subject>Phenotype</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S</subject><subject>Sequence Analysis, DNA</subject><subject>Species Specificity</subject><subject>Systematics</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkU1P3DAQhi1EBRQ4ckW-UPXQBDt2nOSIUD-QkOAAZ2viTHaNknixE9r9AfxvvLsB6suMrUfv2I8JOeMs5ayqLu1TSFmqRF5VCdsjR1wqleRMyP2PPlOH5GsIT4zFA8YOyCFXsZVldkRe72EytgYzoqej-2cH--I8DIEucEjp4F7SHzSs3jugO9ROPR2XMNIGFx4aDNSsTWdNLDC4mYGOLnEFo9vmBtpb451Zh3GzgaGJmc3UgbfDCfnSQhfwdK7H5PHXz4frP8nt3e-b66vbxMhMjkndSF7KsgSTNVVhlJJ1xrHEShSIRYuibE2b1QUv4-Jq88IWSmUk1DVvlRTH5Nsud-Xd84Rh1L0NBrsOBnRT0LxQgolMRDDZgfHGIXhs9crbHvxac6Y33nX0rpneetcs8udz8FT32HzSs-gIXMwABANdGxUbG_7jKplnkkfu-45b2sXyr_Wo4z9sxdXWbYbmuZaa50qINzPbnAI</recordid><startdate>20050701</startdate><enddate>20050701</enddate><creator>Rapala, Jarkko</creator><creator>Berg, Katri A</creator><creator>Lyra, Christina</creator><creator>Niemi, R. Maarit</creator><creator>Manz, Werner</creator><creator>Suomalainen, Sini</creator><creator>Paulin, Lars</creator><creator>Lahti, Kirsti</creator><general>Soc General Microbiol</general><general>Society for General Microbiology</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope></search><sort><creationdate>20050701</creationdate><title>Paucibacter toxinivorans gen. nov., sp. nov., a bacterium that degrades cyclic cyanobacterial hepatotoxins microcystins and nodularin</title><author>Rapala, Jarkko ; Berg, Katri A ; Lyra, Christina ; Niemi, R. Maarit ; Manz, Werner ; Suomalainen, Sini ; Paulin, Lars ; Lahti, Kirsti</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c424t-bd418488ac2d97c664b21e8e937ee7fe38fcf2b718888164482fa86c4abb1f643</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Bacterial Toxins - metabolism</topic><topic>Bacteriology</topic><topic>Betaproteobacteria - chemistry</topic><topic>Betaproteobacteria - classification</topic><topic>Betaproteobacteria - genetics</topic><topic>Betaproteobacteria - metabolism</topic><topic>Biodegradation, Environmental</topic><topic>Biological and medical sciences</topic><topic>Cyanobacteria - metabolism</topic><topic>Cyanobacteria - pathogenicity</topic><topic>DNA, Bacterial - analysis</topic><topic>DNA, Ribosomal - analysis</topic><topic>Fresh Water - microbiology</topic><topic>Freshwater</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Genes, rRNA</topic><topic>Geologic Sediments - microbiology</topic><topic>Microbiology</topic><topic>Microcystins</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Peptides, Cyclic - metabolism</topic><topic>Phenotype</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S</topic><topic>Sequence Analysis, DNA</topic><topic>Species Specificity</topic><topic>Systematics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Rapala, Jarkko</creatorcontrib><creatorcontrib>Berg, Katri A</creatorcontrib><creatorcontrib>Lyra, Christina</creatorcontrib><creatorcontrib>Niemi, R. Maarit</creatorcontrib><creatorcontrib>Manz, Werner</creatorcontrib><creatorcontrib>Suomalainen, Sini</creatorcontrib><creatorcontrib>Paulin, Lars</creatorcontrib><creatorcontrib>Lahti, Kirsti</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Rapala, Jarkko</au><au>Berg, Katri A</au><au>Lyra, Christina</au><au>Niemi, R. Maarit</au><au>Manz, Werner</au><au>Suomalainen, Sini</au><au>Paulin, Lars</au><au>Lahti, Kirsti</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Paucibacter toxinivorans gen. nov., sp. nov., a bacterium that degrades cyclic cyanobacterial hepatotoxins microcystins and nodularin</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2005-07-01</date><risdate>2005</risdate><volume>55</volume><issue>4</issue><spage>1563</spage><epage>1568</epage><pages>1563-1568</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>1 Finnish Environment Institute, PO Box 140, FIN-00251 Helsinki, Finland
2 Fachgebiet Ökologie der Mikroorganismen, Institut für Technischen Umweltschutz, Technische Universität Berlin, D-10587 Berlin, Germany
3 Institute of Biotechnology, PO Box 56, FIN-00014 University of Helsinki, Finland
Correspondence Jarkko Rapala jarkko.rapala{at}sttv.fi
Thirteen bacterial isolates from lake sediment, capable of degrading cyanobacterial hepatotoxins microcystins and nodularin, were characterized by phenotypic, genetic and genomic approaches. Cells of these isolates were Gram-negative, motile by means of a single polar flagellum, oxidase-positive, weakly catalase-positive and rod-shaped. According to phenotypic characteristics (carbon utilization, fatty acid and enzyme activity profiles), the G+C content of the genomic DNA (66·168·0 mol%) and 16S rRNA gene sequence analysis (98·9100 % similarity) the strains formed a single microdiverse genospecies that was most closely related to Roseateles depolymerans (95·796·3 % 16S rRNA gene sequence similarity). The isolates assimilated only a few carbon sources. Of the 96 carbon sources tested, Tween 40 was the only one used by all strains. The strains were able to mineralize phosphorus from organic compounds, and they had strong leucine arylamidase and chymotrypsin activities. The cellular fatty acids identified from all strains were C 16 : 0 (9·819 %) and C 17 : 1 7 c (<15·8 %). The other predominant fatty acids comprised three groups: summed feature 3 (<12·2 %), which included C 14 : 0 3-OH and C 16 : 1 iso I, summed feature 4 (5462 %), which included C 16 : 1 7 c and C 15 : 0 iso OH, and summed feature 7 (8·528 %), which included 7 c , 9 c and 12 t forms of C 18 : 1 . A more detailed analysis of two strains indicated that C 16 : 1 7 c was the main fatty acid. The phylogenetic and phenotypic features separating our strains from recognized bacteria support the creation of a novel genus and species, for which the name Paucibacter toxinivorans gen. nov., sp. nov. is proposed. The type strain is 2C20 T (=DSM 16998 T =HAMBI 2767 T =VYH 193597 T ).
Abbreviations: BChl a , bacteriochlorophyll a ; MP, maximum parsimony; NJ, neighbour joining; PHC, poly(hexamethylene carbonate)
Published online ahead of print on 14 March 2005 as DOI 10.1099/ijs.0.63599-0.
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains 15B, 2, 2B15, 2B17, 2B3, S1030, G44, F39, F36, 7A, 2C23, 2C20 T and 2B5 are AY515379 AY515391, respectively.
Physiological characteristics and whole-cell fatty acid profiles of the strains investigated here are detailed in supplementary tables available in IJSEM Online.
Present address: National Product Control Agency for Welfare and Health, PO Box 210, FIN-00531 Helsinki, Finland.
Present address: Bundesanstalt für Gewässerkunde, Postfach 20 02 53, D-56002 Koblenz, Germany.
Present address: The Water Protection Association of the River Vantaa and Helsinki Region, Asemapäällikönkatu 12 C, FIN-00520 Helsinki, Finland.</abstract><cop>Reading</cop><pub>Soc General Microbiol</pub><pmid>16014482</pmid><doi>10.1099/ijs.0.63599-0</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| source | MEDLINE; Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| subjects | Bacterial Toxins - metabolism Bacteriology Betaproteobacteria - chemistry Betaproteobacteria - classification Betaproteobacteria - genetics Betaproteobacteria - metabolism Biodegradation, Environmental Biological and medical sciences Cyanobacteria - metabolism Cyanobacteria - pathogenicity DNA, Bacterial - analysis DNA, Ribosomal - analysis Fresh Water - microbiology Freshwater Fundamental and applied biological sciences. Psychology Genes, rRNA Geologic Sediments - microbiology Microbiology Microcystins Miscellaneous Molecular Sequence Data Peptides, Cyclic - metabolism Phenotype Phylogeny RNA, Ribosomal, 16S Sequence Analysis, DNA Species Specificity Systematics |
| title | Paucibacter toxinivorans gen. nov., sp. nov., a bacterium that degrades cyclic cyanobacterial hepatotoxins microcystins and nodularin |
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