DEVELOPING A PROTOCOL FOR THE CONVERSION OF RANK-BASED TAXON NAMES TO PHYLOGENETICALLY DEFINED CLADE NAMES, AS EXEMPLIFIED BY TURTLES
We present a rank-free phylogenetic nomenclature for 25 well-established ancient clades of living turtles. This is the first attempt to document fully the nomenclatural history of a clade with the intent of proposing a coherent nomenclatural system to replace the traditional rank-based nomenclature....
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Veröffentlicht in: | Journal of paleontology 2004-09, Vol.78 (5), p.989-1013 |
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description | We present a rank-free phylogenetic nomenclature for 25 well-established ancient clades of living turtles. This is the first attempt to document fully the nomenclatural history of a clade with the intent of proposing a coherent nomenclatural system to replace the traditional rank-based nomenclature. Because of the imperative to retain connectivity to the literature for information retrieval, due consideration is given to balancing the desire to develop a consistent system against the desire to conserve traditional associations between names, taxa (i.e., clades), and characters. Novel issues and problems that emerged during this review include: the unclear name/clade association of traditional names; the creation of synonymy lists from which to choose a name; difficulties associated with selecting a single criterion for choosing among multiple ‘subjectively synonymous’ names; identifying authorship for a converted traditional name; and the potential loss of nomenclatural information due to ‘functional homonyms.’ This work may provide a useful road map to those intent on converting their traditional rank-based nomenclatures to explicitly phylogenetic nomenclatures under the precepts of the PhyloCode. |
doi_str_mv | 10.1666/0022-3360(2004)078<0989:DAPFTC>2.0.CO;2 |
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This is the first attempt to document fully the nomenclatural history of a clade with the intent of proposing a coherent nomenclatural system to replace the traditional rank-based nomenclature. Because of the imperative to retain connectivity to the literature for information retrieval, due consideration is given to balancing the desire to develop a consistent system against the desire to conserve traditional associations between names, taxa (i.e., clades), and characters. Novel issues and problems that emerged during this review include: the unclear name/clade association of traditional names; the creation of synonymy lists from which to choose a name; difficulties associated with selecting a single criterion for choosing among multiple ‘subjectively synonymous’ names; identifying authorship for a converted traditional name; and the potential loss of nomenclatural information due to ‘functional homonyms.’ This work may provide a useful road map to those intent on converting their traditional rank-based nomenclatures to explicitly phylogenetic nomenclatures under the precepts of the PhyloCode.</description><identifier>ISSN: 0022-3360</identifier><identifier>EISSN: 1937-2337</identifier><identifier>DOI: 10.1666/0022-3360(2004)078<0989:DAPFTC>2.0.CO;2</identifier><identifier>CODEN: JPALAZ</identifier><language>eng</language><publisher>New York, USA: Cambridge University Press</publisher><subject>Anapsida ; Bataguridae ; biologic evolution ; Biological taxonomies ; Chelonia ; Chordata ; cladistics ; Classification ; Cryptodira ; data processing ; Evolution ; Fossils ; homonymy ; living taxa ; nomenclature ; Paleontology ; PhyloCode ; Phylogenetics ; Phylogeny ; Reptiles & amphibians ; Reptilia ; synonymy ; Taxa ; taxonomy ; Terminology ; Testudinata ; Testudines ; Tetrapoda ; Tortoises ; Turtles ; Vertebrata ; vertebrate ; Zoology</subject><ispartof>Journal of paleontology, 2004-09, Vol.78 (5), p.989-1013</ispartof><rights>The Paleontological Society</rights><rights>Copyright © The Paleontological Society</rights><rights>GeoRef, Copyright 2020, American Geosciences Institute.</rights><rights>Copyright 2004 The Paleontological Society</rights><rights>Copyright Paleontological Society Sep 2004</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-a614t-64f6e91cb829b8f84fce60705c3d9790ebb457a047a02dcebb9061e8fc6ee8623</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://bioone.org/doi/pdf/10.1666/0022-3360(2004)078<0989:DAPFTC>2.0.CO;2$$EPDF$$P50$$Gbioone$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/4094923$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>315,781,785,804,26983,27929,27930,52368,58022,58255</link.rule.ids></links><search><creatorcontrib>JOYCE, WALTER G</creatorcontrib><creatorcontrib>PARHAM, JAMES F</creatorcontrib><creatorcontrib>GAUTHIER, JACQUES ARMAND</creatorcontrib><title>DEVELOPING A PROTOCOL FOR THE CONVERSION OF RANK-BASED TAXON NAMES TO PHYLOGENETICALLY DEFINED CLADE NAMES, AS EXEMPLIFIED BY TURTLES</title><title>Journal of paleontology</title><addtitle>J. Paleontol</addtitle><description>We present a rank-free phylogenetic nomenclature for 25 well-established ancient clades of living turtles. This is the first attempt to document fully the nomenclatural history of a clade with the intent of proposing a coherent nomenclatural system to replace the traditional rank-based nomenclature. Because of the imperative to retain connectivity to the literature for information retrieval, due consideration is given to balancing the desire to develop a consistent system against the desire to conserve traditional associations between names, taxa (i.e., clades), and characters. Novel issues and problems that emerged during this review include: the unclear name/clade association of traditional names; the creation of synonymy lists from which to choose a name; difficulties associated with selecting a single criterion for choosing among multiple ‘subjectively synonymous’ names; identifying authorship for a converted traditional name; and the potential loss of nomenclatural information due to ‘functional homonyms.’ This work may provide a useful road map to those intent on converting their traditional rank-based nomenclatures to explicitly phylogenetic nomenclatures under the precepts of the PhyloCode.</description><subject>Anapsida</subject><subject>Bataguridae</subject><subject>biologic evolution</subject><subject>Biological taxonomies</subject><subject>Chelonia</subject><subject>Chordata</subject><subject>cladistics</subject><subject>Classification</subject><subject>Cryptodira</subject><subject>data processing</subject><subject>Evolution</subject><subject>Fossils</subject><subject>homonymy</subject><subject>living taxa</subject><subject>nomenclature</subject><subject>Paleontology</subject><subject>PhyloCode</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Reptiles & amphibians</subject><subject>Reptilia</subject><subject>synonymy</subject><subject>Taxa</subject><subject>taxonomy</subject><subject>Terminology</subject><subject>Testudinata</subject><subject>Testudines</subject><subject>Tetrapoda</subject><subject>Tortoises</subject><subject>Turtles</subject><subject>Vertebrata</subject><subject>vertebrate</subject><subject>Zoology</subject><issn>0022-3360</issn><issn>1937-2337</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2004</creationdate><recordtype>article</recordtype><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqdkdFu0zAUhiMEEmXwBlxYXCAQpLMd14kHQsoSp43I4ijJpvXKSlJnStU2I26FeADeG0eZBuIOLizLPp__8_v8lnWO4BxRSs8hxNh2HArfYQjJe-h6nyHz2EXoZ1EZfMFzOA_EJ_zEmiHmuDZ2HPepNXt89dx6ofUWQoQpQjPrZ8hveCKyOF0CH2S5KEUgEhCJHJQrDgKR3vC8iEUKRARyP_1qX_oFD0Hp35q71L_iBSgFyFbrRCx5yss48JNkDUIexanhgsQP-cR9BH4B-C2_ypI4ik3tcg3K67xMePHSetZWO61ePexn1nXEy2BlG9FR0K4oIkebkpYqhpraw6z2Wo-0jaLQhYvG2TCXQVXXZOFWkJiFN405MkiR8tqGKuVR7JxZbyfd-6H_dlL6KPedbtRuVx1Uf9ISuWYoHiIGfPMXuO1Pw8F4k9hBiHgL6hhoOUHN0Gs9qFbeD92-Gn5IBOWYlRynLsepyzErabKSY1ZyykpiCWUg5Ojr9aS01cd-eJQhkBGGx0YfpvKd6nXTqUOjvvfDbvOHqUmeLpzRe_xgq9rXQ7e5U7-5fzfGJ6266_uD-u8P_gKVP8FG</recordid><startdate>20040901</startdate><enddate>20040901</enddate><creator>JOYCE, WALTER G</creator><creator>PARHAM, JAMES F</creator><creator>GAUTHIER, JACQUES ARMAND</creator><general>Cambridge University Press</general><general>Paleontological Society</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>4T-</scope><scope>4U-</scope><scope>7SN</scope><scope>7TN</scope><scope>7XB</scope><scope>88A</scope><scope>88I</scope><scope>8AF</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BEC</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H95</scope><scope>HCIFZ</scope><scope>L.G</scope><scope>LK8</scope><scope>M2O</scope><scope>M2P</scope><scope>M7P</scope><scope>MBDVC</scope><scope>PCBAR</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>R05</scope><scope>S0X</scope></search><sort><creationdate>20040901</creationdate><title>DEVELOPING A PROTOCOL FOR THE CONVERSION OF RANK-BASED TAXON NAMES TO PHYLOGENETICALLY DEFINED CLADE NAMES, AS EXEMPLIFIED BY TURTLES</title><author>JOYCE, WALTER G ; 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subjects | Anapsida Bataguridae biologic evolution Biological taxonomies Chelonia Chordata cladistics Classification Cryptodira data processing Evolution Fossils homonymy living taxa nomenclature Paleontology PhyloCode Phylogenetics Phylogeny Reptiles & amphibians Reptilia synonymy Taxa taxonomy Terminology Testudinata Testudines Tetrapoda Tortoises Turtles Vertebrata vertebrate Zoology |
title | DEVELOPING A PROTOCOL FOR THE CONVERSION OF RANK-BASED TAXON NAMES TO PHYLOGENETICALLY DEFINED CLADE NAMES, AS EXEMPLIFIED BY TURTLES |
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