High efficient parallel numerical surface wave model based on an irregular quasi-rectangular domain decomposition scheme
To achieve high parallel efficiency for the global MASNUM surface wave model, the algorithm of an irregular quasirectangular domain decomposition and related serializing of calculating points and data exchanging schemes are developed and conducted, based on the environment of Message Passing Interfa...
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| Veröffentlicht in: | Science China. Earth sciences 2014-08, Vol.57 (8), p.1869-1878 |
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| creator | Zhao, Wei Song, ZhenYa Qiao, FangLi Yin, XunQiang |
| description | To achieve high parallel efficiency for the global MASNUM surface wave model, the algorithm of an irregular quasirectangular domain decomposition and related serializing of calculating points and data exchanging schemes are developed and conducted, based on the environment of Message Passing Interface（MPI）. The new parallel version of the surface wave model is tested for parallel computing on the platform of the Sunway BlueLight supercomputer in the National Supercomputing Center in Jinan. The testing involves four horizontal resolutions, which are 1°×1°,（1/2）°×（1/2）°,（1/4）°×（1/4）°, and（1/8）°×（1/8）°. These tests are performed without data Input/Output（IO） and the maximum amount of processors used in these tests reaches to 131072. The testing results show that the computing speeds of the model with different resolutions are all increased with the increasing of numbers of processors. When the number of processors is four times that of the base processor number, the parallel efficiencies of all resolutions are greater than 80%. When the number of processors is eight times that of the base processor number, the parallel efficiency of tests with resolutions of 1°×1°,（1/2）°×（1/2）° and（1/4）°×（1/4）° is greater than 80%, and it is 62% for the test with a resolution of（1/8）°×（1/8）° using 131072 processors, which is the nearly all processors of Sunway BlueLight. When the processor＇s number is 24 times that of the base processor number, the parallel efficiencies for tests with resolutions of 1°×1°,（1/2）°×（1/2）°, and（1/4）° ×（1/4）° are 72%, 62%, and 38%, respectively. The speedup and parallel efficiency indicate that the irregular quasi-rectangular domain decomposition and serialization schemes lead to high parallel efficiency and good scalability for a global numerical wave model. |
| doi_str_mv | 10.1007/s11430-014-4842-3 |
| format | Article |
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The new parallel version of the surface wave model is tested for parallel computing on the platform of the Sunway BlueLight supercomputer in the National Supercomputing Center in Jinan. The testing involves four horizontal resolutions, which are 1°×1°,（1/2）°×（1/2）°,（1/4）°×（1/4）°, and（1/8）°×（1/8）°. These tests are performed without data Input/Output（IO） and the maximum amount of processors used in these tests reaches to 131072. The testing results show that the computing speeds of the model with different resolutions are all increased with the increasing of numbers of processors. When the number of processors is four times that of the base processor number, the parallel efficiencies of all resolutions are greater than 80%. When the number of processors is eight times that of the base processor number, the parallel efficiency of tests with resolutions of 1°×1°,（1/2）°×（1/2）° and（1/4）°×（1/4）° is greater than 80%, and it is 62% for the test with a resolution of（1/8）°×（1/8）° using 131072 processors, which is the nearly all processors of Sunway BlueLight. When the processor＇s number is 24 times that of the base processor number, the parallel efficiencies for tests with resolutions of 1°×1°,（1/2）°×（1/2）°, and（1/4）° ×（1/4）° are 72%, 62%, and 38%, respectively. The speedup and parallel efficiency indicate that the irregular quasi-rectangular domain decomposition and serialization schemes lead to high parallel efficiency and good scalability for a global numerical wave model.</description><identifier>ISSN: 1674-7313</identifier><identifier>EISSN: 1869-1897</identifier><identifier>DOI: 10.1007/s11430-014-4842-3</identifier><language>eng</language><publisher>Heidelberg: Science China Press</publisher><subject>Algorithms ; Decomposition ; Earth and Environmental Science ; Earth Sciences ; Oceanography ; Research Paper ; Surface waves ; 分辨率测试 ; 区域分解 ; 并行效率 ; 波模 ; 海浪数值模式 ; 消息传递接口 ; 矩形 ; 表面</subject><ispartof>Science China. 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Earth sciences</title><addtitle>Sci. China Earth Sci</addtitle><addtitle>SCIENCE CHINA Earth Sciences</addtitle><description>To achieve high parallel efficiency for the global MASNUM surface wave model, the algorithm of an irregular quasirectangular domain decomposition and related serializing of calculating points and data exchanging schemes are developed and conducted, based on the environment of Message Passing Interface（MPI）. The new parallel version of the surface wave model is tested for parallel computing on the platform of the Sunway BlueLight supercomputer in the National Supercomputing Center in Jinan. The testing involves four horizontal resolutions, which are 1°×1°,（1/2）°×（1/2）°,（1/4）°×（1/4）°, and（1/8）°×（1/8）°. These tests are performed without data Input/Output（IO） and the maximum amount of processors used in these tests reaches to 131072. The testing results show that the computing speeds of the model with different resolutions are all increased with the increasing of numbers of processors. When the number of processors is four times that of the base processor number, the parallel efficiencies of all resolutions are greater than 80%. When the number of processors is eight times that of the base processor number, the parallel efficiency of tests with resolutions of 1°×1°,（1/2）°×（1/2）° and（1/4）°×（1/4）° is greater than 80%, and it is 62% for the test with a resolution of（1/8）°×（1/8）° using 131072 processors, which is the nearly all processors of Sunway BlueLight. When the processor＇s number is 24 times that of the base processor number, the parallel efficiencies for tests with resolutions of 1°×1°,（1/2）°×（1/2）°, and（1/4）° ×（1/4）° are 72%, 62%, and 38%, respectively. The speedup and parallel efficiency indicate that the irregular quasi-rectangular domain decomposition and serialization schemes lead to high parallel efficiency and good scalability for a global numerical wave model.</description><subject>Algorithms</subject><subject>Decomposition</subject><subject>Earth and Environmental Science</subject><subject>Earth Sciences</subject><subject>Oceanography</subject><subject>Research Paper</subject><subject>Surface waves</subject><subject>分辨率测试</subject><subject>区域分解</subject><subject>并行效率</subject><subject>波模</subject><subject>海浪数值模式</subject><subject>消息传递接口</subject><subject>矩形</subject><subject>表面</subject><issn>1674-7313</issn><issn>1869-1897</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kUtr3TAQhU1IISHND8hOtJtu1OplSV6W0DaFQDftWsyVR_cq2NK9kt3Hv4-CQyldRAtp0Jxv5sDpuhvO3nPGzIfKuZKMMq6oskpQedZdcqsHyu1gzlutjaJGcnnRXdf6wNqRrSPMZff7Lu4PBEOIPmJayBEKTBNOJK0zluhhInUtATySX_ATyZzH1txBxZHkRCCRWAru1wkKOa1QIy3oF0jbz5hniImM6PN8zDUusTHVH3DG192rAFPF6-f3qvvx-dP32zt6_-3L19uP99QrNix06HfYez6y5sCjgJHbneBMm8EbqYWCPoQAg2BBgQA5BtA7q7lgoKxBoeVV926beyz5tGJd3Byrx2mChHmtjpveCiUHrZr07X_Sh7yW1Nw53itj26VtU_FN5UuutWBwxxJnKH8cZ-4pDrfF4Voc7ikOJxsjNqY2bdpj-WfyC9Cb50WHnPanxv3dpDU3dlDN9yM45Zop</recordid><startdate>20140801</startdate><enddate>20140801</enddate><creator>Zhao, Wei</creator><creator>Song, ZhenYa</creator><creator>Qiao, FangLi</creator><creator>Yin, XunQiang</creator><general>Science China Press</general><general>Springer Nature B.V</general><scope>2RA</scope><scope>92L</scope><scope>CQIGP</scope><scope>~WA</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TG</scope><scope>7UA</scope><scope>7XB</scope><scope>88I</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>GNUQQ</scope><scope>H96</scope><scope>HCIFZ</scope><scope>KL.</scope><scope>L.G</scope><scope>M2P</scope><scope>PCBAR</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope></search><sort><creationdate>20140801</creationdate><title>High efficient parallel numerical surface wave model based on an irregular quasi-rectangular domain decomposition scheme</title><author>Zhao, Wei ; 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Earth sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhao, Wei</au><au>Song, ZhenYa</au><au>Qiao, FangLi</au><au>Yin, XunQiang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>High efficient parallel numerical surface wave model based on an irregular quasi-rectangular domain decomposition scheme</atitle><jtitle>Science China. Earth sciences</jtitle><stitle>Sci. China Earth Sci</stitle><addtitle>SCIENCE CHINA Earth Sciences</addtitle><date>2014-08-01</date><risdate>2014</risdate><volume>57</volume><issue>8</issue><spage>1869</spage><epage>1878</epage><pages>1869-1878</pages><issn>1674-7313</issn><eissn>1869-1897</eissn><abstract>To achieve high parallel efficiency for the global MASNUM surface wave model, the algorithm of an irregular quasirectangular domain decomposition and related serializing of calculating points and data exchanging schemes are developed and conducted, based on the environment of Message Passing Interface（MPI）. The new parallel version of the surface wave model is tested for parallel computing on the platform of the Sunway BlueLight supercomputer in the National Supercomputing Center in Jinan. The testing involves four horizontal resolutions, which are 1°×1°,（1/2）°×（1/2）°,（1/4）°×（1/4）°, and（1/8）°×（1/8）°. These tests are performed without data Input/Output（IO） and the maximum amount of processors used in these tests reaches to 131072. The testing results show that the computing speeds of the model with different resolutions are all increased with the increasing of numbers of processors. When the number of processors is four times that of the base processor number, the parallel efficiencies of all resolutions are greater than 80%. When the number of processors is eight times that of the base processor number, the parallel efficiency of tests with resolutions of 1°×1°,（1/2）°×（1/2）° and（1/4）°×（1/4）° is greater than 80%, and it is 62% for the test with a resolution of（1/8）°×（1/8）° using 131072 processors, which is the nearly all processors of Sunway BlueLight. When the processor＇s number is 24 times that of the base processor number, the parallel efficiencies for tests with resolutions of 1°×1°,（1/2）°×（1/2）°, and（1/4）° ×（1/4）° are 72%, 62%, and 38%, respectively. The speedup and parallel efficiency indicate that the irregular quasi-rectangular domain decomposition and serialization schemes lead to high parallel efficiency and good scalability for a global numerical wave model.</abstract><cop>Heidelberg</cop><pub>Science China Press</pub><doi>10.1007/s11430-014-4842-3</doi><tpages>10</tpages></addata></record> |
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| subjects | Algorithms Decomposition Earth and Environmental Science Earth Sciences Oceanography Research Paper Surface waves 分辨率测试 区域分解 并行效率 波模 海浪数值模式 消息传递接口 矩形 表面 |
| title | High efficient parallel numerical surface wave model based on an irregular quasi-rectangular domain decomposition scheme |
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