Molecular cloning and characterization of satellite DNA sequences from constitutive heterochromatin of the habu snake (Protobothrops flavoviridis, Viperidae) and the Burmese python (Python bivittatus, Pythonidae)
Highly repetitive DNA sequences of the centromeric heterochromatin provide valuable molecular cytogenetic markers for the investigation of genomic compartmentalization in the macrochromosomes and microchromosomes of sauropsids. Here, the relationship between centromeric heterochromatin and karyotype...
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| Veröffentlicht in: | Chromosoma 2015-12, Vol.124 (4), p.529-539 |
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| creator | Matsubara, Kazumi Uno, Yoshinobu Srikulnath, Kornsorn Seki, Risako Nishida, Chizuko Matsuda, Yoichi |
| description | Highly repetitive DNA sequences of the centromeric heterochromatin provide valuable molecular cytogenetic markers for the investigation of genomic compartmentalization in the macrochromosomes and microchromosomes of sauropsids. Here, the relationship between centromeric heterochromatin and karyotype evolution was examined using cloned repetitive DNA sequences from two snake species, the habu snake (
Protobothrops flavoviridis
, Crotalinae, Viperidae) and Burmese python (
Python bivittatus
, Pythonidae). Three satellite DNA (stDNA) families were isolated from the heterochromatin of these snakes: 168-bp PFL-MspI from
P. flavoviridis
and 196-bp PBI-DdeI and 174-bp PBI-MspI from
P. bivittatus
. The PFL-MspI and PBI-DdeI sequences were localized to the centromeric regions of most chromosomes in the respective species, suggesting that the two sequences were the major components of the centromeric heterochromatin in these organisms. The PBI-MspI sequence was localized to the pericentromeric region of four chromosome pairs. The PFL-MspI and the PBI-DdeI sequences were conserved only in the genome of closely related species,
Gloydius blomhoffii
(Crotalinae) and
Python molurus
, respectively, although their locations on the chromosomes were slightly different. In contrast, the PBI-MspI sequence was also in the genomes of
P. molurus
and
Boa constrictor
(Boidae), and additionally localized to the centromeric regions of eight chromosome pairs in
B. constrictor
, suggesting that this sequence originated in the genome of a common ancestor of Pythonidae and Boidae, approximately 86 million years ago. The three stDNA sequences showed no genomic compartmentalization between the macrochromosomes and microchromosomes, suggesting that homogenization of the centromeric and/or pericentromeric stDNA sequences occurred in the macrochromosomes and microchromosomes of these snakes. |
| doi_str_mv | 10.1007/s00412-015-0529-6 |
| format | Article |
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Protobothrops flavoviridis
, Crotalinae, Viperidae) and Burmese python (
Python bivittatus
, Pythonidae). Three satellite DNA (stDNA) families were isolated from the heterochromatin of these snakes: 168-bp PFL-MspI from
P. flavoviridis
and 196-bp PBI-DdeI and 174-bp PBI-MspI from
P. bivittatus
. The PFL-MspI and PBI-DdeI sequences were localized to the centromeric regions of most chromosomes in the respective species, suggesting that the two sequences were the major components of the centromeric heterochromatin in these organisms. The PBI-MspI sequence was localized to the pericentromeric region of four chromosome pairs. The PFL-MspI and the PBI-DdeI sequences were conserved only in the genome of closely related species,
Gloydius blomhoffii
(Crotalinae) and
Python molurus
, respectively, although their locations on the chromosomes were slightly different. In contrast, the PBI-MspI sequence was also in the genomes of
P. molurus
and
Boa constrictor
(Boidae), and additionally localized to the centromeric regions of eight chromosome pairs in
B. constrictor
, suggesting that this sequence originated in the genome of a common ancestor of Pythonidae and Boidae, approximately 86 million years ago. The three stDNA sequences showed no genomic compartmentalization between the macrochromosomes and microchromosomes, suggesting that homogenization of the centromeric and/or pericentromeric stDNA sequences occurred in the macrochromosomes and microchromosomes of these snakes.</description><identifier>ISSN: 0009-5915</identifier><identifier>EISSN: 1432-0886</identifier><identifier>DOI: 10.1007/s00412-015-0529-6</identifier><identifier>PMID: 26205503</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Animal Genetics and Genomics ; Animals ; Base Sequence ; Biochemistry ; Biomedical and Life Sciences ; Boa constrictor ; Boidae ; Boidae - genetics ; Cell Biology ; Cloning, Molecular ; Crotalinae ; Developmental Biology ; DNA, Satellite - chemistry ; Eukaryotic Microbiology ; Evolution, Molecular ; Heterochromatin ; Human Genetics ; In Situ Hybridization, Fluorescence ; Karyotype ; Life Sciences ; Molecular Sequence Data ; Original Article ; Python molurus ; Sequence Analysis, DNA ; Trimeresurus - genetics ; Viperidae</subject><ispartof>Chromosoma, 2015-12, Vol.124 (4), p.529-539</ispartof><rights>Springer-Verlag Berlin Heidelberg 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c471t-ae2613db23775228eeae59a6e49278c132ef9f44c7af5e321a2a3615a3b99aaa3</citedby><cites>FETCH-LOGICAL-c471t-ae2613db23775228eeae59a6e49278c132ef9f44c7af5e321a2a3615a3b99aaa3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00412-015-0529-6$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00412-015-0529-6$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26205503$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Matsubara, Kazumi</creatorcontrib><creatorcontrib>Uno, Yoshinobu</creatorcontrib><creatorcontrib>Srikulnath, Kornsorn</creatorcontrib><creatorcontrib>Seki, Risako</creatorcontrib><creatorcontrib>Nishida, Chizuko</creatorcontrib><creatorcontrib>Matsuda, Yoichi</creatorcontrib><title>Molecular cloning and characterization of satellite DNA sequences from constitutive heterochromatin of the habu snake (Protobothrops flavoviridis, Viperidae) and the Burmese python (Python bivittatus, Pythonidae)</title><title>Chromosoma</title><addtitle>Chromosoma</addtitle><addtitle>Chromosoma</addtitle><description>Highly repetitive DNA sequences of the centromeric heterochromatin provide valuable molecular cytogenetic markers for the investigation of genomic compartmentalization in the macrochromosomes and microchromosomes of sauropsids. Here, the relationship between centromeric heterochromatin and karyotype evolution was examined using cloned repetitive DNA sequences from two snake species, the habu snake (
Protobothrops flavoviridis
, Crotalinae, Viperidae) and Burmese python (
Python bivittatus
, Pythonidae). Three satellite DNA (stDNA) families were isolated from the heterochromatin of these snakes: 168-bp PFL-MspI from
P. flavoviridis
and 196-bp PBI-DdeI and 174-bp PBI-MspI from
P. bivittatus
. The PFL-MspI and PBI-DdeI sequences were localized to the centromeric regions of most chromosomes in the respective species, suggesting that the two sequences were the major components of the centromeric heterochromatin in these organisms. The PBI-MspI sequence was localized to the pericentromeric region of four chromosome pairs. The PFL-MspI and the PBI-DdeI sequences were conserved only in the genome of closely related species,
Gloydius blomhoffii
(Crotalinae) and
Python molurus
, respectively, although their locations on the chromosomes were slightly different. In contrast, the PBI-MspI sequence was also in the genomes of
P. molurus
and
Boa constrictor
(Boidae), and additionally localized to the centromeric regions of eight chromosome pairs in
B. constrictor
, suggesting that this sequence originated in the genome of a common ancestor of Pythonidae and Boidae, approximately 86 million years ago. The three stDNA sequences showed no genomic compartmentalization between the macrochromosomes and microchromosomes, suggesting that homogenization of the centromeric and/or pericentromeric stDNA sequences occurred in the macrochromosomes and microchromosomes of these snakes.</description><subject>Animal Genetics and Genomics</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Boa constrictor</subject><subject>Boidae</subject><subject>Boidae - genetics</subject><subject>Cell Biology</subject><subject>Cloning, Molecular</subject><subject>Crotalinae</subject><subject>Developmental Biology</subject><subject>DNA, Satellite - chemistry</subject><subject>Eukaryotic Microbiology</subject><subject>Evolution, Molecular</subject><subject>Heterochromatin</subject><subject>Human Genetics</subject><subject>In Situ Hybridization, Fluorescence</subject><subject>Karyotype</subject><subject>Life Sciences</subject><subject>Molecular Sequence Data</subject><subject>Original Article</subject><subject>Python molurus</subject><subject>Sequence Analysis, DNA</subject><subject>Trimeresurus - genetics</subject><subject>Viperidae</subject><issn>0009-5915</issn><issn>1432-0886</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqNks9u1DAQxiMEotvCA3BBlrgsEgHbiZP4WEr5IxXoAbhGE2fSuCRxsJ2VynPyQMxuCkJISJwsz_y-mfH4S5JHgj8XnJcvAue5kCkXKuVK6rS4k2xEnlGkqoq7yYZzrlOlhTpKjkO43l9lwe8nR7KQXCmebZIf792AZhnAMzO4yU5XDKaWmR48mIjefodo3cRcxwJEHAYbkb36cMoCfltwMhhY593IjJtCtHGJdoesR1I601OC1Adx7CkMzcLCBF-RbS-9i65xkZiZSgywczvrbWvDM_bFztS4BXx6mGUvfbn4EQOy-Sb2NM32cj0bu7MxQlxItYYOsgfJvQ6GgA9vz5Pk8-vzT2dv04uPb96dnV6kJi9FTAFlIbK2kVlZKikrREClocBcy7IyIpPY6S7PTQmdwkwKkJAVQkHWaA0A2UmyXevO3tE2QqxHGwwtCSZ0S6hFqYSUmn7pP9CsqoTWRUnok7_Qa7f4iR5CVK4LIUWuiRIrZbwLwWNXz96O4G9qweu9O-rVHTW5o967oy5I8_i28tKM2P5W_LIDAXIFAqWmK_R_tP5n1Z83jclu</recordid><startdate>20151201</startdate><enddate>20151201</enddate><creator>Matsubara, Kazumi</creator><creator>Uno, Yoshinobu</creator><creator>Srikulnath, Kornsorn</creator><creator>Seki, Risako</creator><creator>Nishida, Chizuko</creator><creator>Matsuda, Yoichi</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QP</scope><scope>7QR</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20151201</creationdate><title>Molecular cloning and characterization of satellite DNA sequences from constitutive heterochromatin of the habu snake (Protobothrops flavoviridis, Viperidae) and the Burmese python (Python bivittatus, Pythonidae)</title><author>Matsubara, Kazumi ; Uno, Yoshinobu ; Srikulnath, Kornsorn ; Seki, Risako ; Nishida, Chizuko ; Matsuda, Yoichi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c471t-ae2613db23775228eeae59a6e49278c132ef9f44c7af5e321a2a3615a3b99aaa3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Animal Genetics and Genomics</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Boa constrictor</topic><topic>Boidae</topic><topic>Boidae - genetics</topic><topic>Cell Biology</topic><topic>Cloning, Molecular</topic><topic>Crotalinae</topic><topic>Developmental Biology</topic><topic>DNA, Satellite - chemistry</topic><topic>Eukaryotic Microbiology</topic><topic>Evolution, Molecular</topic><topic>Heterochromatin</topic><topic>Human Genetics</topic><topic>In Situ Hybridization, Fluorescence</topic><topic>Karyotype</topic><topic>Life Sciences</topic><topic>Molecular Sequence Data</topic><topic>Original Article</topic><topic>Python molurus</topic><topic>Sequence Analysis, DNA</topic><topic>Trimeresurus - genetics</topic><topic>Viperidae</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Matsubara, Kazumi</creatorcontrib><creatorcontrib>Uno, Yoshinobu</creatorcontrib><creatorcontrib>Srikulnath, Kornsorn</creatorcontrib><creatorcontrib>Seki, Risako</creatorcontrib><creatorcontrib>Nishida, Chizuko</creatorcontrib><creatorcontrib>Matsuda, Yoichi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Chromosoma</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Matsubara, Kazumi</au><au>Uno, Yoshinobu</au><au>Srikulnath, Kornsorn</au><au>Seki, Risako</au><au>Nishida, Chizuko</au><au>Matsuda, Yoichi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular cloning and characterization of satellite DNA sequences from constitutive heterochromatin of the habu snake (Protobothrops flavoviridis, Viperidae) and the Burmese python (Python bivittatus, Pythonidae)</atitle><jtitle>Chromosoma</jtitle><stitle>Chromosoma</stitle><addtitle>Chromosoma</addtitle><date>2015-12-01</date><risdate>2015</risdate><volume>124</volume><issue>4</issue><spage>529</spage><epage>539</epage><pages>529-539</pages><issn>0009-5915</issn><eissn>1432-0886</eissn><abstract>Highly repetitive DNA sequences of the centromeric heterochromatin provide valuable molecular cytogenetic markers for the investigation of genomic compartmentalization in the macrochromosomes and microchromosomes of sauropsids. Here, the relationship between centromeric heterochromatin and karyotype evolution was examined using cloned repetitive DNA sequences from two snake species, the habu snake (
Protobothrops flavoviridis
, Crotalinae, Viperidae) and Burmese python (
Python bivittatus
, Pythonidae). Three satellite DNA (stDNA) families were isolated from the heterochromatin of these snakes: 168-bp PFL-MspI from
P. flavoviridis
and 196-bp PBI-DdeI and 174-bp PBI-MspI from
P. bivittatus
. The PFL-MspI and PBI-DdeI sequences were localized to the centromeric regions of most chromosomes in the respective species, suggesting that the two sequences were the major components of the centromeric heterochromatin in these organisms. The PBI-MspI sequence was localized to the pericentromeric region of four chromosome pairs. The PFL-MspI and the PBI-DdeI sequences were conserved only in the genome of closely related species,
Gloydius blomhoffii
(Crotalinae) and
Python molurus
, respectively, although their locations on the chromosomes were slightly different. In contrast, the PBI-MspI sequence was also in the genomes of
P. molurus
and
Boa constrictor
(Boidae), and additionally localized to the centromeric regions of eight chromosome pairs in
B. constrictor
, suggesting that this sequence originated in the genome of a common ancestor of Pythonidae and Boidae, approximately 86 million years ago. The three stDNA sequences showed no genomic compartmentalization between the macrochromosomes and microchromosomes, suggesting that homogenization of the centromeric and/or pericentromeric stDNA sequences occurred in the macrochromosomes and microchromosomes of these snakes.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>26205503</pmid><doi>10.1007/s00412-015-0529-6</doi><tpages>11</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0009-5915 |
| ispartof | Chromosoma, 2015-12, Vol.124 (4), p.529-539 |
| issn | 0009-5915 1432-0886 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1751229004 |
| source | MEDLINE; SpringerLink Journals - AutoHoldings |
| subjects | Animal Genetics and Genomics Animals Base Sequence Biochemistry Biomedical and Life Sciences Boa constrictor Boidae Boidae - genetics Cell Biology Cloning, Molecular Crotalinae Developmental Biology DNA, Satellite - chemistry Eukaryotic Microbiology Evolution, Molecular Heterochromatin Human Genetics In Situ Hybridization, Fluorescence Karyotype Life Sciences Molecular Sequence Data Original Article Python molurus Sequence Analysis, DNA Trimeresurus - genetics Viperidae |
| title | Molecular cloning and characterization of satellite DNA sequences from constitutive heterochromatin of the habu snake (Protobothrops flavoviridis, Viperidae) and the Burmese python (Python bivittatus, Pythonidae) |
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