(S)-Mandelate Dehydrogenase from Pseudomonas putida:  Mutations of the Catalytic Base Histidine-274 and Chemical Rescue of Activity

(S)-Mandelate dehydrogenase from Pseudomonas putida, an FMN-dependent α-hydroxy acid dehydrogenase, oxidizes (S)-mandelate to benzoylformate. The generally accepted catalytic mechanism for this enzyme involves the formation of a carbanion intermediate. Histidine-274 has been proposed to be the activ...

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Veröffentlicht in:Biochemistry (Easton) 1999-08, Vol.38 (31), p.9948-9955
Hauptverfasser: Lehoux, Isabelle E, Mitra, Bharati
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Mitra, Bharati
description (S)-Mandelate dehydrogenase from Pseudomonas putida, an FMN-dependent α-hydroxy acid dehydrogenase, oxidizes (S)-mandelate to benzoylformate. The generally accepted catalytic mechanism for this enzyme involves the formation of a carbanion intermediate. Histidine-274 has been proposed to be the active-site base that abstracts the substrate α-proton to generate the carbanion. Histidine-274 was altered to glycine, alanine, and asparagine. All three mutants were completely inactive. The mutants were able to form adducts with sulfite, though with much weaker affinity than the wild-type enzyme. Binding of the inhibitor, (R)-mandelate, was not greatly affected by the mutation, unlike that of the substrate, (S)-mandelate, indicating that H274 plays a role in substrate binding. The activity of H274G and, to a lesser extent, H274A could be partially restored by the addition of exogenous imidazoles. The maximum rescued activity for H274G with imidazole was ∼0.1% of the wild-type value. Saturation kinetics obtained for rescued activity suggest that formation of a ternary complex of imidazole, enzyme, and substrate is required for catalysis. pH-dependence studies confirm that the free base form of imidazole is the rescue agent. An earlier study of pH profiles of the wild-type enzyme indicated that deprotonation of a residue with a pK a of 5.5 in the free enzyme was essential for activity (Lehoux, I. E., and Mitra, B. (1999) Biochemistry 38, 5836−5848). Data obtained in this work confirm that the pK a of 5.5 belongs to histidine-274.
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The generally accepted catalytic mechanism for this enzyme involves the formation of a carbanion intermediate. Histidine-274 has been proposed to be the active-site base that abstracts the substrate α-proton to generate the carbanion. Histidine-274 was altered to glycine, alanine, and asparagine. All three mutants were completely inactive. The mutants were able to form adducts with sulfite, though with much weaker affinity than the wild-type enzyme. Binding of the inhibitor, (R)-mandelate, was not greatly affected by the mutation, unlike that of the substrate, (S)-mandelate, indicating that H274 plays a role in substrate binding. The activity of H274G and, to a lesser extent, H274A could be partially restored by the addition of exogenous imidazoles. The maximum rescued activity for H274G with imidazole was ∼0.1% of the wild-type value. 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The generally accepted catalytic mechanism for this enzyme involves the formation of a carbanion intermediate. Histidine-274 has been proposed to be the active-site base that abstracts the substrate α-proton to generate the carbanion. Histidine-274 was altered to glycine, alanine, and asparagine. All three mutants were completely inactive. The mutants were able to form adducts with sulfite, though with much weaker affinity than the wild-type enzyme. Binding of the inhibitor, (R)-mandelate, was not greatly affected by the mutation, unlike that of the substrate, (S)-mandelate, indicating that H274 plays a role in substrate binding. The activity of H274G and, to a lesser extent, H274A could be partially restored by the addition of exogenous imidazoles. The maximum rescued activity for H274G with imidazole was ∼0.1% of the wild-type value. Saturation kinetics obtained for rescued activity suggest that formation of a ternary complex of imidazole, enzyme, and substrate is required for catalysis. pH-dependence studies confirm that the free base form of imidazole is the rescue agent. An earlier study of pH profiles of the wild-type enzyme indicated that deprotonation of a residue with a pK a of 5.5 in the free enzyme was essential for activity (Lehoux, I. E., and Mitra, B. (1999) Biochemistry 38, 5836−5848). Data obtained in this work confirm that the pK a of 5.5 belongs to histidine-274.</description><subject>Alanine - genetics</subject><subject>Alcohol Oxidoreductases - antagonists &amp; inhibitors</subject><subject>Alcohol Oxidoreductases - chemistry</subject><subject>Alcohol Oxidoreductases - genetics</subject><subject>Alcohol Oxidoreductases - metabolism</subject><subject>Asparagine - genetics</subject><subject>benzoyl formate</subject><subject>Binding Sites - genetics</subject><subject>Catalysis</subject><subject>Deuterium</subject><subject>Enzyme Inhibitors - chemistry</subject><subject>Flavin Mononucleotide - chemistry</subject><subject>Glycine - genetics</subject><subject>Histidine - genetics</subject><subject>Histidine - metabolism</subject><subject>Hydrogen-Ion Concentration</subject><subject>Imidazoles - chemistry</subject><subject>Kinetics</subject><subject>mandelate dehydrogenase</subject><subject>Mandelic Acids - chemistry</subject><subject>Mutagenesis, Site-Directed</subject><subject>Pseudomonas putida</subject><subject>Pseudomonas putida - enzymology</subject><subject>Pseudomonas putida - genetics</subject><subject>Recombinant Proteins - antagonists &amp; inhibitors</subject><subject>Recombinant Proteins - chemistry</subject><subject>Recombinant Proteins - isolation &amp; purification</subject><subject>Recombinant Proteins - metabolism</subject><subject>Substrate Specificity</subject><subject>Sulfites - chemistry</subject><issn>0006-2960</issn><issn>1520-4995</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1999</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNptkM1u1DAURi1ERYfCghdA3oDoIuCfZBx3VwboIE2hoiMhdWM5zjXjksSD7SBmx4ZFX7NPgkepKhasrnx97vdJB6FnlLymhNE3jZOSiIqzB2hGK0aKUsrqIZoRQuYFk3NyiB7HeJ2fJRHlI3RIScm5IHSG_ry6PC7O9dBCpxPgd7DZtcF_g0FHwDb4Hl9EGFvf-7zB2zG5Vp_c_r7B52PSyfkhYm9x2gBe6KS7XXIGv93fLl3MrBugYKLEuQAvNtA7ozv8BaIZYX93apL76dLuCTqwuovw9G4eofWH9-vFslh9Pvu4OF0VmtckFcYIWsu61A3UJae1bjWrmGyaGqylvGUVF6VshACoJKeSW7DCGNCtKG3L-RF6OcVug_8xQkyqd9FA1-kB_BgVFbkm52fweAJN8DEGsGobXK_DTlGi9srVvfLMPr8LHZse2n_IyXEGignIRuDX_b8O39VccFGp9cWlWorq6uvVJ6ZWmX8x8dpEde3HMGQl_yn-C8NMmEw</recordid><startdate>19990803</startdate><enddate>19990803</enddate><creator>Lehoux, Isabelle E</creator><creator>Mitra, Bharati</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope></search><sort><creationdate>19990803</creationdate><title>(S)-Mandelate Dehydrogenase from Pseudomonas putida:  Mutations of the Catalytic Base Histidine-274 and Chemical Rescue of Activity</title><author>Lehoux, Isabelle E ; Mitra, Bharati</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a380t-cc718984abe84318ada2529bb8eff13d253749b77ee593193fef7ccead74fd33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1999</creationdate><topic>Alanine - genetics</topic><topic>Alcohol Oxidoreductases - antagonists &amp; inhibitors</topic><topic>Alcohol Oxidoreductases - chemistry</topic><topic>Alcohol Oxidoreductases - genetics</topic><topic>Alcohol Oxidoreductases - metabolism</topic><topic>Asparagine - genetics</topic><topic>benzoyl formate</topic><topic>Binding Sites - genetics</topic><topic>Catalysis</topic><topic>Deuterium</topic><topic>Enzyme Inhibitors - chemistry</topic><topic>Flavin Mononucleotide - chemistry</topic><topic>Glycine - genetics</topic><topic>Histidine - genetics</topic><topic>Histidine - metabolism</topic><topic>Hydrogen-Ion Concentration</topic><topic>Imidazoles - chemistry</topic><topic>Kinetics</topic><topic>mandelate dehydrogenase</topic><topic>Mandelic Acids - chemistry</topic><topic>Mutagenesis, Site-Directed</topic><topic>Pseudomonas putida</topic><topic>Pseudomonas putida - enzymology</topic><topic>Pseudomonas putida - genetics</topic><topic>Recombinant Proteins - antagonists &amp; inhibitors</topic><topic>Recombinant Proteins - chemistry</topic><topic>Recombinant Proteins - isolation &amp; purification</topic><topic>Recombinant Proteins - metabolism</topic><topic>Substrate Specificity</topic><topic>Sulfites - chemistry</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lehoux, Isabelle E</creatorcontrib><creatorcontrib>Mitra, Bharati</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><jtitle>Biochemistry (Easton)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lehoux, Isabelle E</au><au>Mitra, Bharati</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>(S)-Mandelate Dehydrogenase from Pseudomonas putida:  Mutations of the Catalytic Base Histidine-274 and Chemical Rescue of Activity</atitle><jtitle>Biochemistry (Easton)</jtitle><addtitle>Biochemistry</addtitle><date>1999-08-03</date><risdate>1999</risdate><volume>38</volume><issue>31</issue><spage>9948</spage><epage>9955</epage><pages>9948-9955</pages><issn>0006-2960</issn><eissn>1520-4995</eissn><abstract>(S)-Mandelate dehydrogenase from Pseudomonas putida, an FMN-dependent α-hydroxy acid dehydrogenase, oxidizes (S)-mandelate to benzoylformate. The generally accepted catalytic mechanism for this enzyme involves the formation of a carbanion intermediate. Histidine-274 has been proposed to be the active-site base that abstracts the substrate α-proton to generate the carbanion. Histidine-274 was altered to glycine, alanine, and asparagine. All three mutants were completely inactive. The mutants were able to form adducts with sulfite, though with much weaker affinity than the wild-type enzyme. Binding of the inhibitor, (R)-mandelate, was not greatly affected by the mutation, unlike that of the substrate, (S)-mandelate, indicating that H274 plays a role in substrate binding. The activity of H274G and, to a lesser extent, H274A could be partially restored by the addition of exogenous imidazoles. The maximum rescued activity for H274G with imidazole was ∼0.1% of the wild-type value. Saturation kinetics obtained for rescued activity suggest that formation of a ternary complex of imidazole, enzyme, and substrate is required for catalysis. pH-dependence studies confirm that the free base form of imidazole is the rescue agent. An earlier study of pH profiles of the wild-type enzyme indicated that deprotonation of a residue with a pK a of 5.5 in the free enzyme was essential for activity (Lehoux, I. E., and Mitra, B. (1999) Biochemistry 38, 5836−5848). Data obtained in this work confirm that the pK a of 5.5 belongs to histidine-274.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>10433701</pmid><doi>10.1021/bi9907532</doi><tpages>8</tpages></addata></record>
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subjects Alanine - genetics
Alcohol Oxidoreductases - antagonists & inhibitors
Alcohol Oxidoreductases - chemistry
Alcohol Oxidoreductases - genetics
Alcohol Oxidoreductases - metabolism
Asparagine - genetics
benzoyl formate
Binding Sites - genetics
Catalysis
Deuterium
Enzyme Inhibitors - chemistry
Flavin Mononucleotide - chemistry
Glycine - genetics
Histidine - genetics
Histidine - metabolism
Hydrogen-Ion Concentration
Imidazoles - chemistry
Kinetics
mandelate dehydrogenase
Mandelic Acids - chemistry
Mutagenesis, Site-Directed
Pseudomonas putida
Pseudomonas putida - enzymology
Pseudomonas putida - genetics
Recombinant Proteins - antagonists & inhibitors
Recombinant Proteins - chemistry
Recombinant Proteins - isolation & purification
Recombinant Proteins - metabolism
Substrate Specificity
Sulfites - chemistry
title (S)-Mandelate Dehydrogenase from Pseudomonas putida:  Mutations of the Catalytic Base Histidine-274 and Chemical Rescue of Activity
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