Comprehensive analysis of SAUR gene family in citrus and its transcriptional correlation with fruitlet drop from abscission zone A
Small auxin-up RNA (SAUR) gene family is large, and the members of which can be rapidly induced by auxin and encode highly unstable mRNAs. SAUR genes are involved in various developmental and physiological processes, such as leaf senescence, fruitlet abscission, and hypocotyl development. However, t...
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| Veröffentlicht in: | Functional & integrative genomics 2015-11, Vol.15 (6), p.729-740 |
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| creator | Xie, Rangjin Dong, Cuicui Ma, Yanyan Deng, Lie He, Shaolan Yi, Shilai Lv, Qiang Zheng, Yongqiang |
| description | Small auxin-up RNA (SAUR) gene family is large, and the members of which can be rapidly induced by auxin and encode highly unstable mRNAs. SAUR genes are involved in various developmental and physiological processes, such as leaf senescence, fruitlet abscission, and hypocotyl development. However, their modes of action in citrus remain unknown. Hereby, a systematic analysis of SAUR gene family in citrus was conducted through a genome-wide search. In this study, a total of 70 SAUR genes, referred to as CitSAURs, have been identified in citrus. The evolutionary relationship and the intro-exon organization were analyzed, revealing strong gene conservation and the expansion of particular functional genes during plant evolution. Expression analysis showed that the major of CitSAUR genes were expressed in at least one tissue and showed distinctive expression levels, indicating the SAUR gene family play important roles in the development and growth of citrus organs. However, there were more than 20 CitSAUR genes such as CitSARU36, CitSAUR37, and CitSAUR54 exhibiting very low expression level in all tissue tested. Twenty-three out of 70 CitSAUR genes were responded to indole-3-acetic acid (IAA) treatment, of which just CitSAUR19 was down-regulated. Additionally, 14 CitSAUR genes exhibited distinct changes during fruitlet abscission, however just 5 of them including CitSAUR06, CitSAUR08, CitSAUR44, CitSAUR61, and CitSAUR64 were associated with fruitlet abscission. The current study provides basic information for the citrus SAUR gene family and will pave the way for deciphering the precise role of SAURs in citrus development and growth as well as fruitlet abscission. |
| doi_str_mv | 10.1007/s10142-015-0450-3 |
| format | Article |
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SAUR genes are involved in various developmental and physiological processes, such as leaf senescence, fruitlet abscission, and hypocotyl development. However, their modes of action in citrus remain unknown. Hereby, a systematic analysis of SAUR gene family in citrus was conducted through a genome-wide search. In this study, a total of 70 SAUR genes, referred to as CitSAURs, have been identified in citrus. The evolutionary relationship and the intro-exon organization were analyzed, revealing strong gene conservation and the expansion of particular functional genes during plant evolution. Expression analysis showed that the major of CitSAUR genes were expressed in at least one tissue and showed distinctive expression levels, indicating the SAUR gene family play important roles in the development and growth of citrus organs. However, there were more than 20 CitSAUR genes such as CitSARU36, CitSAUR37, and CitSAUR54 exhibiting very low expression level in all tissue tested. Twenty-three out of 70 CitSAUR genes were responded to indole-3-acetic acid (IAA) treatment, of which just CitSAUR19 was down-regulated. Additionally, 14 CitSAUR genes exhibited distinct changes during fruitlet abscission, however just 5 of them including CitSAUR06, CitSAUR08, CitSAUR44, CitSAUR61, and CitSAUR64 were associated with fruitlet abscission. The current study provides basic information for the citrus SAUR gene family and will pave the way for deciphering the precise role of SAURs in citrus development and growth as well as fruitlet abscission.</description><identifier>ISSN: 1438-793X</identifier><identifier>EISSN: 1438-7948</identifier><identifier>DOI: 10.1007/s10142-015-0450-3</identifier><identifier>PMID: 26115718</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>abscission ; Animal Genetics and Genomics ; Biochemistry ; Bioinformatics ; Biomedical and Life Sciences ; Cell Biology ; Citrus ; Citrus - genetics ; Citrus - growth & development ; Citrus fruits ; evolution ; Fruit - genetics ; Fruit - growth & development ; Gene expression ; gene expression regulation ; Gene Expression Regulation, Developmental ; Gene Expression Regulation, Plant ; genes ; Genomics ; growth and development ; hypocotyls ; indole acetic acid ; Indoleacetic Acids - metabolism ; leaves ; Life Sciences ; mechanism of action ; messenger RNA ; Microbial Genetics and Genomics ; Multigene Family ; Original Paper ; Plant biology ; Plant Genetics and Genomics ; Ribonucleic acid ; RNA ; transcription (genetics) ; Transcriptional Activation</subject><ispartof>Functional & integrative genomics, 2015-11, Vol.15 (6), p.729-740</ispartof><rights>Springer-Verlag Berlin Heidelberg 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c499t-81ee00bafa63ec7ea7d343325874abb861df0853fc87f07fbf44f63780be777b3</citedby><cites>FETCH-LOGICAL-c499t-81ee00bafa63ec7ea7d343325874abb861df0853fc87f07fbf44f63780be777b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10142-015-0450-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10142-015-0450-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26115718$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xie, Rangjin</creatorcontrib><creatorcontrib>Dong, Cuicui</creatorcontrib><creatorcontrib>Ma, Yanyan</creatorcontrib><creatorcontrib>Deng, Lie</creatorcontrib><creatorcontrib>He, Shaolan</creatorcontrib><creatorcontrib>Yi, Shilai</creatorcontrib><creatorcontrib>Lv, Qiang</creatorcontrib><creatorcontrib>Zheng, Yongqiang</creatorcontrib><title>Comprehensive analysis of SAUR gene family in citrus and its transcriptional correlation with fruitlet drop from abscission zone A</title><title>Functional & integrative genomics</title><addtitle>Funct Integr Genomics</addtitle><addtitle>Funct Integr Genomics</addtitle><description>Small auxin-up RNA (SAUR) gene family is large, and the members of which can be rapidly induced by auxin and encode highly unstable mRNAs. SAUR genes are involved in various developmental and physiological processes, such as leaf senescence, fruitlet abscission, and hypocotyl development. However, their modes of action in citrus remain unknown. Hereby, a systematic analysis of SAUR gene family in citrus was conducted through a genome-wide search. In this study, a total of 70 SAUR genes, referred to as CitSAURs, have been identified in citrus. The evolutionary relationship and the intro-exon organization were analyzed, revealing strong gene conservation and the expansion of particular functional genes during plant evolution. Expression analysis showed that the major of CitSAUR genes were expressed in at least one tissue and showed distinctive expression levels, indicating the SAUR gene family play important roles in the development and growth of citrus organs. However, there were more than 20 CitSAUR genes such as CitSARU36, CitSAUR37, and CitSAUR54 exhibiting very low expression level in all tissue tested. Twenty-three out of 70 CitSAUR genes were responded to indole-3-acetic acid (IAA) treatment, of which just CitSAUR19 was down-regulated. Additionally, 14 CitSAUR genes exhibited distinct changes during fruitlet abscission, however just 5 of them including CitSAUR06, CitSAUR08, CitSAUR44, CitSAUR61, and CitSAUR64 were associated with fruitlet abscission. The current study provides basic information for the citrus SAUR gene family and will pave the way for deciphering the precise role of SAURs in citrus development and growth as well as fruitlet abscission.</description><subject>abscission</subject><subject>Animal Genetics and Genomics</subject><subject>Biochemistry</subject><subject>Bioinformatics</subject><subject>Biomedical and Life Sciences</subject><subject>Cell Biology</subject><subject>Citrus</subject><subject>Citrus - genetics</subject><subject>Citrus - growth & development</subject><subject>Citrus fruits</subject><subject>evolution</subject><subject>Fruit - genetics</subject><subject>Fruit - growth & development</subject><subject>Gene expression</subject><subject>gene expression regulation</subject><subject>Gene Expression Regulation, Developmental</subject><subject>Gene Expression Regulation, Plant</subject><subject>genes</subject><subject>Genomics</subject><subject>growth and development</subject><subject>hypocotyls</subject><subject>indole acetic acid</subject><subject>Indoleacetic Acids - metabolism</subject><subject>leaves</subject><subject>Life Sciences</subject><subject>mechanism of action</subject><subject>messenger RNA</subject><subject>Microbial Genetics and Genomics</subject><subject>Multigene Family</subject><subject>Original Paper</subject><subject>Plant biology</subject><subject>Plant Genetics and Genomics</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>transcription (genetics)</subject><subject>Transcriptional Activation</subject><issn>1438-793X</issn><issn>1438-7948</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqNkU2L1TAUhosozjj6A9xowI2b6slXky4vF0eFAcHxgruQtsmdDG1Tc9qR63J-ubl2HMSFuEoOed73QJ6ieE7hDQVQb5ECFawEKksQEkr-oDilgutS1UI_vL_zryfFE8RrAJBQ88fFCasolYrq0-J2G4cpuSs3YrhxxI62P2BAEj253Ow-k70bHfF2CP2BhJG0YU4LZqwjYUYyJztim8I0h5iTpI0pud4eJ_I9zFfEpyXMvZtJl-KUpzgQ22AbEI_Ij5jLN0-LR9726J7dnWfF7vzdl-2H8uLT-4_bzUXZirqeS02dA2istxV3rXJWdVxwzqRWwjaNrmjnQUvuW608KN94IXzFlYbGKaUafla8XnunFL8tDmczBGxd39vRxQUNVZxpLgWt_wNlqq6pljKjr_5Cr-OS8mf8oiouKiZFpuhKtSkiJufNlMJg08FQMEeXZnVpsktzdGl4zry4a16awXX3id_yMsBWAPPTuHfpj9X_aH25hryNxu5TQLO7ZEArAMqZYoz_BH7Ms-I</recordid><startdate>20151101</startdate><enddate>20151101</enddate><creator>Xie, Rangjin</creator><creator>Dong, Cuicui</creator><creator>Ma, Yanyan</creator><creator>Deng, Lie</creator><creator>He, Shaolan</creator><creator>Yi, Shilai</creator><creator>Lv, Qiang</creator><creator>Zheng, Yongqiang</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PADUT</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20151101</creationdate><title>Comprehensive analysis of SAUR gene family in citrus and its transcriptional correlation with fruitlet drop from abscission zone A</title><author>Xie, Rangjin ; Dong, Cuicui ; Ma, Yanyan ; Deng, Lie ; He, Shaolan ; Yi, Shilai ; Lv, Qiang ; Zheng, Yongqiang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c499t-81ee00bafa63ec7ea7d343325874abb861df0853fc87f07fbf44f63780be777b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>abscission</topic><topic>Animal Genetics and Genomics</topic><topic>Biochemistry</topic><topic>Bioinformatics</topic><topic>Biomedical and Life Sciences</topic><topic>Cell Biology</topic><topic>Citrus</topic><topic>Citrus - genetics</topic><topic>Citrus - growth & development</topic><topic>Citrus fruits</topic><topic>evolution</topic><topic>Fruit - genetics</topic><topic>Fruit - growth & development</topic><topic>Gene expression</topic><topic>gene expression regulation</topic><topic>Gene Expression Regulation, Developmental</topic><topic>Gene Expression Regulation, Plant</topic><topic>genes</topic><topic>Genomics</topic><topic>growth and development</topic><topic>hypocotyls</topic><topic>indole acetic acid</topic><topic>Indoleacetic Acids - metabolism</topic><topic>leaves</topic><topic>Life Sciences</topic><topic>mechanism of action</topic><topic>messenger RNA</topic><topic>Microbial Genetics and Genomics</topic><topic>Multigene Family</topic><topic>Original Paper</topic><topic>Plant biology</topic><topic>Plant Genetics and Genomics</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>transcription (genetics)</topic><topic>Transcriptional Activation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xie, Rangjin</creatorcontrib><creatorcontrib>Dong, Cuicui</creatorcontrib><creatorcontrib>Ma, Yanyan</creatorcontrib><creatorcontrib>Deng, Lie</creatorcontrib><creatorcontrib>He, Shaolan</creatorcontrib><creatorcontrib>Yi, Shilai</creatorcontrib><creatorcontrib>Lv, Qiang</creatorcontrib><creatorcontrib>Zheng, Yongqiang</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection (ProQuest)</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Research Library China</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Functional & integrative genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xie, Rangjin</au><au>Dong, Cuicui</au><au>Ma, Yanyan</au><au>Deng, Lie</au><au>He, Shaolan</au><au>Yi, Shilai</au><au>Lv, Qiang</au><au>Zheng, Yongqiang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comprehensive analysis of SAUR gene family in citrus and its transcriptional correlation with fruitlet drop from abscission zone A</atitle><jtitle>Functional & integrative genomics</jtitle><stitle>Funct Integr Genomics</stitle><addtitle>Funct Integr Genomics</addtitle><date>2015-11-01</date><risdate>2015</risdate><volume>15</volume><issue>6</issue><spage>729</spage><epage>740</epage><pages>729-740</pages><issn>1438-793X</issn><eissn>1438-7948</eissn><abstract>Small auxin-up RNA (SAUR) gene family is large, and the members of which can be rapidly induced by auxin and encode highly unstable mRNAs. SAUR genes are involved in various developmental and physiological processes, such as leaf senescence, fruitlet abscission, and hypocotyl development. However, their modes of action in citrus remain unknown. Hereby, a systematic analysis of SAUR gene family in citrus was conducted through a genome-wide search. In this study, a total of 70 SAUR genes, referred to as CitSAURs, have been identified in citrus. The evolutionary relationship and the intro-exon organization were analyzed, revealing strong gene conservation and the expansion of particular functional genes during plant evolution. Expression analysis showed that the major of CitSAUR genes were expressed in at least one tissue and showed distinctive expression levels, indicating the SAUR gene family play important roles in the development and growth of citrus organs. However, there were more than 20 CitSAUR genes such as CitSARU36, CitSAUR37, and CitSAUR54 exhibiting very low expression level in all tissue tested. Twenty-three out of 70 CitSAUR genes were responded to indole-3-acetic acid (IAA) treatment, of which just CitSAUR19 was down-regulated. Additionally, 14 CitSAUR genes exhibited distinct changes during fruitlet abscission, however just 5 of them including CitSAUR06, CitSAUR08, CitSAUR44, CitSAUR61, and CitSAUR64 were associated with fruitlet abscission. The current study provides basic information for the citrus SAUR gene family and will pave the way for deciphering the precise role of SAURs in citrus development and growth as well as fruitlet abscission.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>26115718</pmid><doi>10.1007/s10142-015-0450-3</doi><tpages>12</tpages></addata></record> |
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| subjects | abscission Animal Genetics and Genomics Biochemistry Bioinformatics Biomedical and Life Sciences Cell Biology Citrus Citrus - genetics Citrus - growth & development Citrus fruits evolution Fruit - genetics Fruit - growth & development Gene expression gene expression regulation Gene Expression Regulation, Developmental Gene Expression Regulation, Plant genes Genomics growth and development hypocotyls indole acetic acid Indoleacetic Acids - metabolism leaves Life Sciences mechanism of action messenger RNA Microbial Genetics and Genomics Multigene Family Original Paper Plant biology Plant Genetics and Genomics Ribonucleic acid RNA transcription (genetics) Transcriptional Activation |
| title | Comprehensive analysis of SAUR gene family in citrus and its transcriptional correlation with fruitlet drop from abscission zone A |
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