Identification of differentially expressed microRNAs involved in non-traumatic osteonecrosis through microRNA expression profiling
Accumulating evidence has recently indicated a vital role of microRNAs (miRNAs) in the development of various bone diseases. However, the biological role of miRNAs in the pathogenesis of non-traumatic osteonecrosis of femoral head (ONFH) has not yet been investigated. The present study aimed to prof...
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description | Accumulating evidence has recently indicated a vital role of microRNAs (miRNAs) in the development of various bone diseases. However, the biological role of miRNAs in the pathogenesis of non-traumatic osteonecrosis of femoral head (ONFH) has not yet been investigated. The present study aimed to profile the differential miRNA expression between non-traumatic ONFH and femoral neck fracture and to develop further understanding of the molecular mechanisms involved in the pathogenesis of non-traumatic ONFH. Femoral heads from 4 patients with non-traumatic ONFH and 4 with femoral neck fracture were used to analyze the miRNA expression profiles in bone tissue using the Exiqon miRCURY™ LNA Array (v.18.0). The results of miRNA microarray analysis were further confirmed by real-time quantitative polymerase chain reaction (qPCR). The differentially expressed miRNA target genes and signaling pathways involved were predicted by bioinformatics analysis. MiRNA microarray chip analysis revealed that 22 miRNAs were significantly up-regulated and 17 were significantly down-regulated in the non-traumatic ONFH samples compared with the femoral neck fracture samples. The real-time qPCR also confirmed the microarray data. Bioinformatics analysis demonstrated that toll-like receptor (TLR), neurotrophin and NOD-like receptor signaling pathway were most likely to be regulated by these differential miRNAs. This miRNA microarray study reveals significant differences in miRNA expression between patients with non-traumatic ONFH and those with femoral neck fracture. Our data also manifests that the signaling pathways regulated by these differentially expressed miRNAs might be important in the pathogenesis of non-traumatic ONFH.
•39 apparently aberrant miRNAs were screened out in the study.•Real-time qPCR verified the reliability of the microarray data.•Differential miRNAs regulated TLR, neurotrophin and NOD-like receptor pathway.•These dysregulated miRNAs may play important role in non-traumatic ONFH. |
doi_str_mv | 10.1016/j.gene.2015.03.072 |
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•39 apparently aberrant miRNAs were screened out in the study.•Real-time qPCR verified the reliability of the microarray data.•Differential miRNAs regulated TLR, neurotrophin and NOD-like receptor pathway.•These dysregulated miRNAs may play important role in non-traumatic ONFH.</description><identifier>ISSN: 0378-1119</identifier><identifier>EISSN: 1879-0038</identifier><identifier>DOI: 10.1016/j.gene.2015.03.072</identifier><identifier>PMID: 25863178</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Aged ; Female ; Femoral neck fracture ; Femoral Neck Fractures - genetics ; Femoral Neck Fractures - pathology ; Gene Expression Profiling - methods ; Gene Expression Regulation ; Humans ; Male ; Microarray ; MicroRNAs - genetics ; Middle Aged ; MiRNA ; Non-traumatic ONFH ; Oligonucleotide Array Sequence Analysis - methods ; Osteonecrosis - genetics ; Osteonecrosis - pathology ; Signal Transduction</subject><ispartof>Gene, 2015-07, Vol.565 (1), p.22-29</ispartof><rights>2015 Elsevier B.V.</rights><rights>Copyright © 2015 Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c459t-160ced1553a87be23f91588a545f362e866f9ff6051af7a91d346493004380923</citedby><cites>FETCH-LOGICAL-c459t-160ced1553a87be23f91588a545f362e866f9ff6051af7a91d346493004380923</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.gene.2015.03.072$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25863178$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wu, Xingjing</creatorcontrib><creatorcontrib>Zhang, Yongtao</creatorcontrib><creatorcontrib>Guo, Xiong</creatorcontrib><creatorcontrib>Xu, Hongguang</creatorcontrib><creatorcontrib>Xu, Zhujun</creatorcontrib><creatorcontrib>Duan, Dapeng</creatorcontrib><creatorcontrib>Wang, Kunzheng</creatorcontrib><title>Identification of differentially expressed microRNAs involved in non-traumatic osteonecrosis through microRNA expression profiling</title><title>Gene</title><addtitle>Gene</addtitle><description>Accumulating evidence has recently indicated a vital role of microRNAs (miRNAs) in the development of various bone diseases. However, the biological role of miRNAs in the pathogenesis of non-traumatic osteonecrosis of femoral head (ONFH) has not yet been investigated. The present study aimed to profile the differential miRNA expression between non-traumatic ONFH and femoral neck fracture and to develop further understanding of the molecular mechanisms involved in the pathogenesis of non-traumatic ONFH. Femoral heads from 4 patients with non-traumatic ONFH and 4 with femoral neck fracture were used to analyze the miRNA expression profiles in bone tissue using the Exiqon miRCURY™ LNA Array (v.18.0). The results of miRNA microarray analysis were further confirmed by real-time quantitative polymerase chain reaction (qPCR). The differentially expressed miRNA target genes and signaling pathways involved were predicted by bioinformatics analysis. MiRNA microarray chip analysis revealed that 22 miRNAs were significantly up-regulated and 17 were significantly down-regulated in the non-traumatic ONFH samples compared with the femoral neck fracture samples. The real-time qPCR also confirmed the microarray data. Bioinformatics analysis demonstrated that toll-like receptor (TLR), neurotrophin and NOD-like receptor signaling pathway were most likely to be regulated by these differential miRNAs. This miRNA microarray study reveals significant differences in miRNA expression between patients with non-traumatic ONFH and those with femoral neck fracture. Our data also manifests that the signaling pathways regulated by these differentially expressed miRNAs might be important in the pathogenesis of non-traumatic ONFH.
•39 apparently aberrant miRNAs were screened out in the study.•Real-time qPCR verified the reliability of the microarray data.•Differential miRNAs regulated TLR, neurotrophin and NOD-like receptor pathway.•These dysregulated miRNAs may play important role in non-traumatic ONFH.</description><subject>Aged</subject><subject>Female</subject><subject>Femoral neck fracture</subject><subject>Femoral Neck Fractures - genetics</subject><subject>Femoral Neck Fractures - pathology</subject><subject>Gene Expression Profiling - methods</subject><subject>Gene Expression Regulation</subject><subject>Humans</subject><subject>Male</subject><subject>Microarray</subject><subject>MicroRNAs - genetics</subject><subject>Middle Aged</subject><subject>MiRNA</subject><subject>Non-traumatic ONFH</subject><subject>Oligonucleotide Array Sequence Analysis - methods</subject><subject>Osteonecrosis - genetics</subject><subject>Osteonecrosis - pathology</subject><subject>Signal Transduction</subject><issn>0378-1119</issn><issn>1879-0038</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1r3DAQhkVoSbZp_0APxcde7I4k68PQSwj9CIQWSnIWij3aaLGlrWQvybW_vDKb5NjOZWB43neYeQl5T6GhQOWnXbPFgA0DKhrgDSh2QjZUq64G4PoV2QBXuqaUdmfkTc47KCUEOyVnTGjJqdIb8udqwDB753s7-xiq6KrBO4dpndpxfKzwYZ8wZxyqyfcp_vpxkSsfDnE8lJEPVYihnpNdpmLQVzHPGAMWMPtczfcpLtv7F-Wz2bppn6Lzow_bt-S1s2PGd0_9nNx-_XJz-b2-_vnt6vLiuu5b0c01ldDjQIXgVqs7ZNx1VGhtRSsclwy1lK5zToKg1inb0YG3su04QMs1dIyfk49H37L594J5NpPPPY6jDRiXbKjiTINWbft_VCqltRKtLig7ouvJOaEz--Qnmx4NBbPGZHZmjcmsMRngpsRURB-e_Je7CYcXyXMuBfh8BLA85OAxmdx7DOUBPmE_myH6f_n_BQwipZ4</recordid><startdate>20150701</startdate><enddate>20150701</enddate><creator>Wu, Xingjing</creator><creator>Zhang, Yongtao</creator><creator>Guo, Xiong</creator><creator>Xu, Hongguang</creator><creator>Xu, Zhujun</creator><creator>Duan, Dapeng</creator><creator>Wang, Kunzheng</creator><general>Elsevier B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20150701</creationdate><title>Identification of differentially expressed microRNAs involved in non-traumatic osteonecrosis through microRNA expression profiling</title><author>Wu, Xingjing ; Zhang, Yongtao ; Guo, Xiong ; Xu, Hongguang ; Xu, Zhujun ; Duan, Dapeng ; Wang, Kunzheng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c459t-160ced1553a87be23f91588a545f362e866f9ff6051af7a91d346493004380923</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Aged</topic><topic>Female</topic><topic>Femoral neck fracture</topic><topic>Femoral Neck Fractures - genetics</topic><topic>Femoral Neck Fractures - pathology</topic><topic>Gene Expression Profiling - methods</topic><topic>Gene Expression Regulation</topic><topic>Humans</topic><topic>Male</topic><topic>Microarray</topic><topic>MicroRNAs - genetics</topic><topic>Middle Aged</topic><topic>MiRNA</topic><topic>Non-traumatic ONFH</topic><topic>Oligonucleotide Array Sequence Analysis - methods</topic><topic>Osteonecrosis - genetics</topic><topic>Osteonecrosis - pathology</topic><topic>Signal Transduction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wu, Xingjing</creatorcontrib><creatorcontrib>Zhang, Yongtao</creatorcontrib><creatorcontrib>Guo, Xiong</creatorcontrib><creatorcontrib>Xu, Hongguang</creatorcontrib><creatorcontrib>Xu, Zhujun</creatorcontrib><creatorcontrib>Duan, Dapeng</creatorcontrib><creatorcontrib>Wang, Kunzheng</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Gene</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wu, Xingjing</au><au>Zhang, Yongtao</au><au>Guo, Xiong</au><au>Xu, Hongguang</au><au>Xu, Zhujun</au><au>Duan, Dapeng</au><au>Wang, Kunzheng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identification of differentially expressed microRNAs involved in non-traumatic osteonecrosis through microRNA expression profiling</atitle><jtitle>Gene</jtitle><addtitle>Gene</addtitle><date>2015-07-01</date><risdate>2015</risdate><volume>565</volume><issue>1</issue><spage>22</spage><epage>29</epage><pages>22-29</pages><issn>0378-1119</issn><eissn>1879-0038</eissn><abstract>Accumulating evidence has recently indicated a vital role of microRNAs (miRNAs) in the development of various bone diseases. However, the biological role of miRNAs in the pathogenesis of non-traumatic osteonecrosis of femoral head (ONFH) has not yet been investigated. The present study aimed to profile the differential miRNA expression between non-traumatic ONFH and femoral neck fracture and to develop further understanding of the molecular mechanisms involved in the pathogenesis of non-traumatic ONFH. Femoral heads from 4 patients with non-traumatic ONFH and 4 with femoral neck fracture were used to analyze the miRNA expression profiles in bone tissue using the Exiqon miRCURY™ LNA Array (v.18.0). The results of miRNA microarray analysis were further confirmed by real-time quantitative polymerase chain reaction (qPCR). The differentially expressed miRNA target genes and signaling pathways involved were predicted by bioinformatics analysis. MiRNA microarray chip analysis revealed that 22 miRNAs were significantly up-regulated and 17 were significantly down-regulated in the non-traumatic ONFH samples compared with the femoral neck fracture samples. The real-time qPCR also confirmed the microarray data. Bioinformatics analysis demonstrated that toll-like receptor (TLR), neurotrophin and NOD-like receptor signaling pathway were most likely to be regulated by these differential miRNAs. This miRNA microarray study reveals significant differences in miRNA expression between patients with non-traumatic ONFH and those with femoral neck fracture. Our data also manifests that the signaling pathways regulated by these differentially expressed miRNAs might be important in the pathogenesis of non-traumatic ONFH.
•39 apparently aberrant miRNAs were screened out in the study.•Real-time qPCR verified the reliability of the microarray data.•Differential miRNAs regulated TLR, neurotrophin and NOD-like receptor pathway.•These dysregulated miRNAs may play important role in non-traumatic ONFH.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>25863178</pmid><doi>10.1016/j.gene.2015.03.072</doi><tpages>8</tpages></addata></record> |
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subjects | Aged Female Femoral neck fracture Femoral Neck Fractures - genetics Femoral Neck Fractures - pathology Gene Expression Profiling - methods Gene Expression Regulation Humans Male Microarray MicroRNAs - genetics Middle Aged MiRNA Non-traumatic ONFH Oligonucleotide Array Sequence Analysis - methods Osteonecrosis - genetics Osteonecrosis - pathology Signal Transduction |
title | Identification of differentially expressed microRNAs involved in non-traumatic osteonecrosis through microRNA expression profiling |
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