Retardation of Protein Dynamics by Trehalose in Dehydrated Systems of Photosynthetic Reaction Centers. Insights from Electron Transfer and Thermal Denaturation Kinetics
Conformational protein dynamics is known to be hampered in amorphous matrixes upon dehydration, both in the absence and in the presence of glass forming disaccharides, like trehalose, resulting in enhanced protein thermal stability. To shed light on such matrix effects, we have compared the retardat...
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description | Conformational protein dynamics is known to be hampered in amorphous matrixes upon dehydration, both in the absence and in the presence of glass forming disaccharides, like trehalose, resulting in enhanced protein thermal stability. To shed light on such matrix effects, we have compared the retardation of protein dynamics in photosynthetic bacterial reaction centers (RC) dehydrated at controlled relative humidity in the absence (RC films) or in the presence of trehalose (RC–trehalose glasses). Small scale RC dynamics, associated with the relaxation from the dark-adapted to the light-adapted conformation, have been probed up to the second time scale by analyzing the kinetics of electron transfer from the photoreduced quinone acceptor (QA –) to the photoxidized primary donor (P+) as a function of the duration of photoexcitation from 7 ns (laser pulse) to 20 s. A more severe inhibition of dynamics is found in RC–trehalose glasses than in RC films: only in the latter system does a complete relaxation to the light-adapted conformation occur even at extreme dehydration, although strongly retarded. To gain insight into the large scale RC dynamics up to the time scale of days, the kinetics of thermal denaturation have been studied at 44 °C by spectral analysis of the Q x and Q y bands of the RC bacteriochlorin cofactors, as a function of the sugar/protein molar ratio, m, varied between 0 and 104. Upon increasing m, denaturation is slowed progressively, and above m ∼ 500 the RC is stable at least for several days. The stronger retardation of RC relaxation and dynamics induced by trehalose is discussed in the light of a recent molecular dynamics simulation study performed in matrixes of the model protein lysozyme with and without trehalose. We suggest that the efficiency of trehalose in retarding RC dynamics and preventing thermal denaturation stems mainly from its propensity to form and stabilize extended networks of hydrogen bonds involving sugar, residual water, and surface residues of the RC complex and from its ability of reducing the free volume fraction of protein alone matrixes. |
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Small scale RC dynamics, associated with the relaxation from the dark-adapted to the light-adapted conformation, have been probed up to the second time scale by analyzing the kinetics of electron transfer from the photoreduced quinone acceptor (QA –) to the photoxidized primary donor (P+) as a function of the duration of photoexcitation from 7 ns (laser pulse) to 20 s. A more severe inhibition of dynamics is found in RC–trehalose glasses than in RC films: only in the latter system does a complete relaxation to the light-adapted conformation occur even at extreme dehydration, although strongly retarded. To gain insight into the large scale RC dynamics up to the time scale of days, the kinetics of thermal denaturation have been studied at 44 °C by spectral analysis of the Q x and Q y bands of the RC bacteriochlorin cofactors, as a function of the sugar/protein molar ratio, m, varied between 0 and 104. Upon increasing m, denaturation is slowed progressively, and above m ∼ 500 the RC is stable at least for several days. The stronger retardation of RC relaxation and dynamics induced by trehalose is discussed in the light of a recent molecular dynamics simulation study performed in matrixes of the model protein lysozyme with and without trehalose. We suggest that the efficiency of trehalose in retarding RC dynamics and preventing thermal denaturation stems mainly from its propensity to form and stabilize extended networks of hydrogen bonds involving sugar, residual water, and surface residues of the RC complex and from its ability of reducing the free volume fraction of protein alone matrixes.</description><identifier>ISSN: 1520-6106</identifier><identifier>EISSN: 1520-5207</identifier><identifier>DOI: 10.1021/acs.jpcb.5b02986</identifier><identifier>PMID: 26083980</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>Dehydration ; Electron Transport ; Kinetics ; Molecular Dynamics Simulation ; Muramidase - chemistry ; Muramidase - metabolism ; Photosynthetic Reaction Center Complex Proteins - antagonists & inhibitors ; Photosynthetic Reaction Center Complex Proteins - chemistry ; Photosynthetic Reaction Center Complex Proteins - metabolism ; Protein Conformation - drug effects ; Protein Denaturation - drug effects ; Protein Stability - drug effects ; Rhodobacter sphaeroides - chemistry ; Rhodobacter sphaeroides - metabolism ; Temperature ; Trehalose - pharmacology</subject><ispartof>The journal of physical chemistry. 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Insights from Electron Transfer and Thermal Denaturation Kinetics</title><title>The journal of physical chemistry. B</title><addtitle>J. Phys. Chem. B</addtitle><description>Conformational protein dynamics is known to be hampered in amorphous matrixes upon dehydration, both in the absence and in the presence of glass forming disaccharides, like trehalose, resulting in enhanced protein thermal stability. To shed light on such matrix effects, we have compared the retardation of protein dynamics in photosynthetic bacterial reaction centers (RC) dehydrated at controlled relative humidity in the absence (RC films) or in the presence of trehalose (RC–trehalose glasses). Small scale RC dynamics, associated with the relaxation from the dark-adapted to the light-adapted conformation, have been probed up to the second time scale by analyzing the kinetics of electron transfer from the photoreduced quinone acceptor (QA –) to the photoxidized primary donor (P+) as a function of the duration of photoexcitation from 7 ns (laser pulse) to 20 s. A more severe inhibition of dynamics is found in RC–trehalose glasses than in RC films: only in the latter system does a complete relaxation to the light-adapted conformation occur even at extreme dehydration, although strongly retarded. To gain insight into the large scale RC dynamics up to the time scale of days, the kinetics of thermal denaturation have been studied at 44 °C by spectral analysis of the Q x and Q y bands of the RC bacteriochlorin cofactors, as a function of the sugar/protein molar ratio, m, varied between 0 and 104. Upon increasing m, denaturation is slowed progressively, and above m ∼ 500 the RC is stable at least for several days. The stronger retardation of RC relaxation and dynamics induced by trehalose is discussed in the light of a recent molecular dynamics simulation study performed in matrixes of the model protein lysozyme with and without trehalose. We suggest that the efficiency of trehalose in retarding RC dynamics and preventing thermal denaturation stems mainly from its propensity to form and stabilize extended networks of hydrogen bonds involving sugar, residual water, and surface residues of the RC complex and from its ability of reducing the free volume fraction of protein alone matrixes.</description><subject>Dehydration</subject><subject>Electron Transport</subject><subject>Kinetics</subject><subject>Molecular Dynamics Simulation</subject><subject>Muramidase - chemistry</subject><subject>Muramidase - metabolism</subject><subject>Photosynthetic Reaction Center Complex Proteins - antagonists & inhibitors</subject><subject>Photosynthetic Reaction Center Complex Proteins - chemistry</subject><subject>Photosynthetic Reaction Center Complex Proteins - metabolism</subject><subject>Protein Conformation - drug effects</subject><subject>Protein Denaturation - drug effects</subject><subject>Protein Stability - drug effects</subject><subject>Rhodobacter sphaeroides - chemistry</subject><subject>Rhodobacter sphaeroides - metabolism</subject><subject>Temperature</subject><subject>Trehalose - pharmacology</subject><issn>1520-6106</issn><issn>1520-5207</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kU1v1DAQhiMEoqVw54R85MAu_tjY6RFtC1RUApXlHE3sMUmV2IvHOeQf8TPxfsCNgzWW5n2fseetqteCrwWX4j1YWj_ubbeuOy6vG_2kuhS15KtyzNPzXQuuL6oXRI-cy1o2-nl1ITVv1HXDL6vfD5ghOchDDCx69i3FjENgN0uAabDEuoXtEvYwRkJ2aGC_uAQZHfu-UMaJjrY-5khLyD3mwbIHBHskbjFkTLRmd4GGn30m5lOc2O2INqfS3yUI5DExCI7tekwTjGVEgDyn05u-DOGApJfVMw8j4atzvap-fLzdbT-v7r9-utt-uF-BMk1eOYfOK8m1UJ77RmmlwSB0DiSKWrta16i6hhuhjdfG1MbJzplmo5FvrOrUVfX2xN2n-GtGyu00kMVxhIBxplaYskIjpdwUKT9JbYpECX27T8MEaWkFbw_5tCWf9pBPe86nWN6c6XM3oftn-BtIEbw7CY7WOKdQPvt_3h8RjaAT</recordid><startdate>20151029</startdate><enddate>20151029</enddate><creator>Malferrari, Marco</creator><creator>Francia, Francesco</creator><creator>Venturoli, Giovanni</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20151029</creationdate><title>Retardation of Protein Dynamics by Trehalose in Dehydrated Systems of Photosynthetic Reaction Centers. 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B</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Malferrari, Marco</au><au>Francia, Francesco</au><au>Venturoli, Giovanni</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Retardation of Protein Dynamics by Trehalose in Dehydrated Systems of Photosynthetic Reaction Centers. Insights from Electron Transfer and Thermal Denaturation Kinetics</atitle><jtitle>The journal of physical chemistry. B</jtitle><addtitle>J. Phys. Chem. B</addtitle><date>2015-10-29</date><risdate>2015</risdate><volume>119</volume><issue>43</issue><spage>13600</spage><epage>13618</epage><pages>13600-13618</pages><issn>1520-6106</issn><eissn>1520-5207</eissn><abstract>Conformational protein dynamics is known to be hampered in amorphous matrixes upon dehydration, both in the absence and in the presence of glass forming disaccharides, like trehalose, resulting in enhanced protein thermal stability. To shed light on such matrix effects, we have compared the retardation of protein dynamics in photosynthetic bacterial reaction centers (RC) dehydrated at controlled relative humidity in the absence (RC films) or in the presence of trehalose (RC–trehalose glasses). Small scale RC dynamics, associated with the relaxation from the dark-adapted to the light-adapted conformation, have been probed up to the second time scale by analyzing the kinetics of electron transfer from the photoreduced quinone acceptor (QA –) to the photoxidized primary donor (P+) as a function of the duration of photoexcitation from 7 ns (laser pulse) to 20 s. A more severe inhibition of dynamics is found in RC–trehalose glasses than in RC films: only in the latter system does a complete relaxation to the light-adapted conformation occur even at extreme dehydration, although strongly retarded. To gain insight into the large scale RC dynamics up to the time scale of days, the kinetics of thermal denaturation have been studied at 44 °C by spectral analysis of the Q x and Q y bands of the RC bacteriochlorin cofactors, as a function of the sugar/protein molar ratio, m, varied between 0 and 104. Upon increasing m, denaturation is slowed progressively, and above m ∼ 500 the RC is stable at least for several days. The stronger retardation of RC relaxation and dynamics induced by trehalose is discussed in the light of a recent molecular dynamics simulation study performed in matrixes of the model protein lysozyme with and without trehalose. We suggest that the efficiency of trehalose in retarding RC dynamics and preventing thermal denaturation stems mainly from its propensity to form and stabilize extended networks of hydrogen bonds involving sugar, residual water, and surface residues of the RC complex and from its ability of reducing the free volume fraction of protein alone matrixes.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>26083980</pmid><doi>10.1021/acs.jpcb.5b02986</doi><tpages>19</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Dehydration Electron Transport Kinetics Molecular Dynamics Simulation Muramidase - chemistry Muramidase - metabolism Photosynthetic Reaction Center Complex Proteins - antagonists & inhibitors Photosynthetic Reaction Center Complex Proteins - chemistry Photosynthetic Reaction Center Complex Proteins - metabolism Protein Conformation - drug effects Protein Denaturation - drug effects Protein Stability - drug effects Rhodobacter sphaeroides - chemistry Rhodobacter sphaeroides - metabolism Temperature Trehalose - pharmacology |
title | Retardation of Protein Dynamics by Trehalose in Dehydrated Systems of Photosynthetic Reaction Centers. Insights from Electron Transfer and Thermal Denaturation Kinetics |
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