Rabovirus: a proposed new picornavirus genus that is phylogenetically basal to enteroviruses and sapeloviruses
We have sequenced the genome of a novel picornavirus, rabovirus A (rat-borne virus, RaBoV-A, NC_026314), which was present in the feces of a Norway rat (Rattus norvegicus) from Berlin, Germany. This virus is related to members of the genera Enterovirus and Sapelovirus. RaboV-A contains a type II IRE...
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| Veröffentlicht in: | Archives of virology 2015-10, Vol.160 (10), p.2569-2575 |
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| creator | Ng, Terry Fei Fan Sachsenröder, Jana Reuter, Gábor Knowles, Nick J Delwart, Eric Johne, Reimar |
| description | We have sequenced the genome of a novel picornavirus, rabovirus A (rat-borne virus, RaBoV-A, NC_026314), which was present in the feces of a Norway rat (Rattus norvegicus) from Berlin, Germany. This virus is related to members of the genera Enterovirus and Sapelovirus. RaboV-A contains a type II IRES that is unlike the type I IRES elements of enteroviruses and the type IV elements of sapeloviruses. Its genome is marked by an L protein and a chymotrypsin-like 2A protease. Our analysis of genome organization, pairwise identities, motif, phylogenic and UTR (GIMPU) indicates that RaBoV-A potentially represents a new picornavirus genus, for which we propose the name “Rabovirus”. Spread by their rodent hosts and detected in New York and Berlin rats, these viruses may have a wide geographic distribution. |
| doi_str_mv | 10.1007/s00705-015-2523-y |
| format | Article |
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This virus is related to members of the genera Enterovirus and Sapelovirus. RaboV-A contains a type II IRES that is unlike the type I IRES elements of enteroviruses and the type IV elements of sapeloviruses. Its genome is marked by an L protein and a chymotrypsin-like 2A protease. Our analysis of genome organization, pairwise identities, motif, phylogenic and UTR (GIMPU) indicates that RaBoV-A potentially represents a new picornavirus genus, for which we propose the name “Rabovirus”. Spread by their rodent hosts and detected in New York and Berlin rats, these viruses may have a wide geographic distribution.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-015-2523-y</identifier><identifier>PMID: 26168710</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Animals ; Base Sequence ; Biomedical and Life Sciences ; Biomedicine ; Brief Report ; Enterovirus ; Enterovirus - classification ; Enterovirus - genetics ; feces ; genome ; Genome, Viral ; Genomes ; geographical distribution ; Germany ; hosts ; Infections ; Infectious Diseases ; Medical Microbiology ; Molecular Sequence Data ; Phylogeny ; Picornaviridae - classification ; Picornaviridae - genetics ; Picornaviridae - isolation & purification ; Picornaviridae Infections - veterinary ; Picornaviridae Infections - virology ; Picornavirus ; Poliomyelitis ; proteinases ; Proteins ; Rats ; Rattus norvegicus ; RNA polymerase ; Rodent Diseases - virology ; Sapelovirus ; sequence analysis ; Viral Proteins - genetics ; Virology ; Viruses</subject><ispartof>Archives of virology, 2015-10, Vol.160 (10), p.2569-2575</ispartof><rights>Springer-Verlag Wien 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c429t-889e4a5247d18d10746fa523263c019d3f70145766ee7db399d51ffd5b61f5e03</citedby><cites>FETCH-LOGICAL-c429t-889e4a5247d18d10746fa523263c019d3f70145766ee7db399d51ffd5b61f5e03</cites><orcidid>0000-0002-4815-8697</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-015-2523-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-015-2523-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27923,27924,41487,42556,51318</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26168710$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ng, Terry Fei Fan</creatorcontrib><creatorcontrib>Sachsenröder, Jana</creatorcontrib><creatorcontrib>Reuter, Gábor</creatorcontrib><creatorcontrib>Knowles, Nick J</creatorcontrib><creatorcontrib>Delwart, Eric</creatorcontrib><creatorcontrib>Johne, Reimar</creatorcontrib><title>Rabovirus: a proposed new picornavirus genus that is phylogenetically basal to enteroviruses and sapeloviruses</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>We have sequenced the genome of a novel picornavirus, rabovirus A (rat-borne virus, RaBoV-A, NC_026314), which was present in the feces of a Norway rat (Rattus norvegicus) from Berlin, Germany. This virus is related to members of the genera Enterovirus and Sapelovirus. RaboV-A contains a type II IRES that is unlike the type I IRES elements of enteroviruses and the type IV elements of sapeloviruses. Its genome is marked by an L protein and a chymotrypsin-like 2A protease. Our analysis of genome organization, pairwise identities, motif, phylogenic and UTR (GIMPU) indicates that RaBoV-A potentially represents a new picornavirus genus, for which we propose the name “Rabovirus”. Spread by their rodent hosts and detected in New York and Berlin rats, these viruses may have a wide geographic distribution.</description><subject>Animals</subject><subject>Base Sequence</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brief Report</subject><subject>Enterovirus</subject><subject>Enterovirus - classification</subject><subject>Enterovirus - genetics</subject><subject>feces</subject><subject>genome</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>geographical distribution</subject><subject>Germany</subject><subject>hosts</subject><subject>Infections</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Phylogeny</subject><subject>Picornaviridae - classification</subject><subject>Picornaviridae - genetics</subject><subject>Picornaviridae - isolation & purification</subject><subject>Picornaviridae Infections - veterinary</subject><subject>Picornaviridae Infections - virology</subject><subject>Picornavirus</subject><subject>Poliomyelitis</subject><subject>proteinases</subject><subject>Proteins</subject><subject>Rats</subject><subject>Rattus norvegicus</subject><subject>RNA polymerase</subject><subject>Rodent Diseases - virology</subject><subject>Sapelovirus</subject><subject>sequence analysis</subject><subject>Viral Proteins - genetics</subject><subject>Virology</subject><subject>Viruses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkUtv1TAQhS1ERS-FH8AGLLFhkzLjZ8KuqnhJlSoBXVtOMrlNlRsHOwHl3-OSFiEWFZuxfOabM7IPYy8QThHAvk25gC4AdSG0kMX6iO1QSVGUtiofsx1IUEVpoDxmT1O6AciC1E_YsTBoSouwY-MXX4cffVzSO-75FMMUErV8pJ986psQR_-7yfc05jpf-5n3iU_X6xCyRHPf-GFYee2TH_gcOI0zxc2QEvdjy5OfaLhXnrGjzg-Jnt-dJ-zqw_tv55-Ki8uPn8_PLopGiWouyrIi5bVQtsWyRbDKdPkqhZENYNXKzgIqbY0hsm0tq6rV2HWtrg12mkCesDebb37R94XS7A59amgY_EhhSQ6tEJhdtfoPFE2lwBqb0df_oDdhyV80bJSxlYAyU7hRTQwpRercFPuDj6tDcLe5uS03l3Nzt7m5Nc-8vHNe6gO1fybug8qA2ICUW-Oe4l-rH3B9tQ11Pji_j31yV18FoAFAYZWu5C_P0q0Q</recordid><startdate>20151001</startdate><enddate>20151001</enddate><creator>Ng, Terry Fei Fan</creator><creator>Sachsenröder, Jana</creator><creator>Reuter, Gábor</creator><creator>Knowles, Nick J</creator><creator>Delwart, Eric</creator><creator>Johne, Reimar</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-4815-8697</orcidid></search><sort><creationdate>20151001</creationdate><title>Rabovirus: a proposed new picornavirus genus that is phylogenetically basal to enteroviruses and sapeloviruses</title><author>Ng, Terry Fei Fan ; Sachsenröder, Jana ; Reuter, Gábor ; Knowles, Nick J ; Delwart, Eric ; Johne, Reimar</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c429t-889e4a5247d18d10746fa523263c019d3f70145766ee7db399d51ffd5b61f5e03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Animals</topic><topic>Base Sequence</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Brief Report</topic><topic>Enterovirus</topic><topic>Enterovirus - classification</topic><topic>Enterovirus - genetics</topic><topic>feces</topic><topic>genome</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>geographical distribution</topic><topic>Germany</topic><topic>hosts</topic><topic>Infections</topic><topic>Infectious Diseases</topic><topic>Medical Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Phylogeny</topic><topic>Picornaviridae - classification</topic><topic>Picornaviridae - genetics</topic><topic>Picornaviridae - isolation & purification</topic><topic>Picornaviridae Infections - veterinary</topic><topic>Picornaviridae Infections - virology</topic><topic>Picornavirus</topic><topic>Poliomyelitis</topic><topic>proteinases</topic><topic>Proteins</topic><topic>Rats</topic><topic>Rattus norvegicus</topic><topic>RNA polymerase</topic><topic>Rodent Diseases - virology</topic><topic>Sapelovirus</topic><topic>sequence analysis</topic><topic>Viral Proteins - genetics</topic><topic>Virology</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ng, Terry Fei Fan</creatorcontrib><creatorcontrib>Sachsenröder, Jana</creatorcontrib><creatorcontrib>Reuter, Gábor</creatorcontrib><creatorcontrib>Knowles, Nick J</creatorcontrib><creatorcontrib>Delwart, Eric</creatorcontrib><creatorcontrib>Johne, Reimar</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ng, Terry Fei Fan</au><au>Sachsenröder, Jana</au><au>Reuter, Gábor</au><au>Knowles, Nick J</au><au>Delwart, Eric</au><au>Johne, Reimar</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Rabovirus: a proposed new picornavirus genus that is phylogenetically basal to enteroviruses and sapeloviruses</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2015-10-01</date><risdate>2015</risdate><volume>160</volume><issue>10</issue><spage>2569</spage><epage>2575</epage><pages>2569-2575</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>We have sequenced the genome of a novel picornavirus, rabovirus A (rat-borne virus, RaBoV-A, NC_026314), which was present in the feces of a Norway rat (Rattus norvegicus) from Berlin, Germany. This virus is related to members of the genera Enterovirus and Sapelovirus. RaboV-A contains a type II IRES that is unlike the type I IRES elements of enteroviruses and the type IV elements of sapeloviruses. Its genome is marked by an L protein and a chymotrypsin-like 2A protease. Our analysis of genome organization, pairwise identities, motif, phylogenic and UTR (GIMPU) indicates that RaBoV-A potentially represents a new picornavirus genus, for which we propose the name “Rabovirus”. Spread by their rodent hosts and detected in New York and Berlin rats, these viruses may have a wide geographic distribution.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>26168710</pmid><doi>10.1007/s00705-015-2523-y</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0002-4815-8697</orcidid></addata></record> |
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| subjects | Animals Base Sequence Biomedical and Life Sciences Biomedicine Brief Report Enterovirus Enterovirus - classification Enterovirus - genetics feces genome Genome, Viral Genomes geographical distribution Germany hosts Infections Infectious Diseases Medical Microbiology Molecular Sequence Data Phylogeny Picornaviridae - classification Picornaviridae - genetics Picornaviridae - isolation & purification Picornaviridae Infections - veterinary Picornaviridae Infections - virology Picornavirus Poliomyelitis proteinases Proteins Rats Rattus norvegicus RNA polymerase Rodent Diseases - virology Sapelovirus sequence analysis Viral Proteins - genetics Virology Viruses |
| title | Rabovirus: a proposed new picornavirus genus that is phylogenetically basal to enteroviruses and sapeloviruses |
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