Dynamic gene expression analysis of maternal, cytoplasmic and embryo genetic systems for linolenic and erucic acid contents in rapeseed (Brassica napus L.)
The genetic effects including genetic main effects and genotype × environment (GE) interaction effects were analyzed for linolenic acid content (LLAC) and erucic acid content (EAC) in rapeseed using unconditional and conditional genetic models for diploid seed quantitative traits. The results from u...
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description | The genetic effects including genetic main effects and genotype × environment (GE) interaction effects were analyzed for linolenic acid content (LLAC) and erucic acid content (EAC) in rapeseed using unconditional and conditional genetic models for diploid seed quantitative traits. The results from unconditional analysis revealed that GE effects were important for both traits during seed development. Also the higher magnitude of embryo effects at different developmental times indicated that seed selection would be useful for improving these quality traits in rapeseed. The conditional analysis showed that new expression of genes from maternal and embryo genetic systems occurred during different developmental stages and their magnitude could be influenced by the GE effects. The total narrow-sense heritability was high for both LLAC and EAC, with general heritability being more prominent for EAC at 15 days (32.87 %), 29 days (31.44 %), 36 days (60.55 %) and 43 days (76.45 %), and GE interaction heritability dominating for LLAC at 22 days (40.57 %), 29 days (60.91 %), 36 days (63.83 %) and 43 days (47.45 %) after flowering, respectively. Phenotypic and genotypic correlations for both traits were positive among some pairwise developmental times indicating that genes expressed at these times complemented each other to improve LLAC or EAC in rapeseed. Significant negative correlation between LLAC and EAC at most developmental times indicated that it may not be possible to simultaneously reduce the contents of both traits by indirect selection. |
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The results from unconditional analysis revealed that GE effects were important for both traits during seed development. Also the higher magnitude of embryo effects at different developmental times indicated that seed selection would be useful for improving these quality traits in rapeseed. The conditional analysis showed that new expression of genes from maternal and embryo genetic systems occurred during different developmental stages and their magnitude could be influenced by the GE effects. The total narrow-sense heritability was high for both LLAC and EAC, with general heritability being more prominent for EAC at 15 days (32.87 %), 29 days (31.44 %), 36 days (60.55 %) and 43 days (76.45 %), and GE interaction heritability dominating for LLAC at 22 days (40.57 %), 29 days (60.91 %), 36 days (63.83 %) and 43 days (47.45 %) after flowering, respectively. Phenotypic and genotypic correlations for both traits were positive among some pairwise developmental times indicating that genes expressed at these times complemented each other to improve LLAC or EAC in rapeseed. Significant negative correlation between LLAC and EAC at most developmental times indicated that it may not be possible to simultaneously reduce the contents of both traits by indirect selection.</description><identifier>ISSN: 0014-2336</identifier><identifier>EISSN: 1573-5060</identifier><identifier>DOI: 10.1007/s10681-015-1436-x</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Acids ; Analysis ; Biomedical and Life Sciences ; Biotechnology ; Brassica napus ; Developmental stages ; diploidy ; Embryo ; Embryonic development ; Embryos ; erucic acid ; flowering ; Flowers & plants ; Gene expression ; Genetic aspects ; Genetic effects ; Genetic research ; Genetics ; genotype ; genotype-environment interaction ; heritability ; Life Sciences ; linolenic acid ; Linolenic acids ; plant breeding ; Plant Genetics and Genomics ; Plant Pathology ; Plant Physiology ; Plant Sciences ; quantitative traits ; rapeseed ; seed development</subject><ispartof>Euphytica, 2015-09, Vol.205 (2), p.585-598</ispartof><rights>Springer Science+Business Media Dordrecht 2015</rights><rights>COPYRIGHT 2015 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c462t-c48f65f7b43b22adaf5c184d4476de9c887d0366bab89551c063b04fa63e90253</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10681-015-1436-x$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10681-015-1436-x$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27922,27923,41486,42555,51317</link.rule.ids></links><search><creatorcontrib>Variath, Murali Tottekkaad</creatorcontrib><creatorcontrib>Wu, Jianguo G</creatorcontrib><creatorcontrib>Shi, Chunhai H</creatorcontrib><title>Dynamic gene expression analysis of maternal, cytoplasmic and embryo genetic systems for linolenic and erucic acid contents in rapeseed (Brassica napus L.)</title><title>Euphytica</title><addtitle>Euphytica</addtitle><description>The genetic effects including genetic main effects and genotype × environment (GE) interaction effects were analyzed for linolenic acid content (LLAC) and erucic acid content (EAC) in rapeseed using unconditional and conditional genetic models for diploid seed quantitative traits. The results from unconditional analysis revealed that GE effects were important for both traits during seed development. Also the higher magnitude of embryo effects at different developmental times indicated that seed selection would be useful for improving these quality traits in rapeseed. The conditional analysis showed that new expression of genes from maternal and embryo genetic systems occurred during different developmental stages and their magnitude could be influenced by the GE effects. The total narrow-sense heritability was high for both LLAC and EAC, with general heritability being more prominent for EAC at 15 days (32.87 %), 29 days (31.44 %), 36 days (60.55 %) and 43 days (76.45 %), and GE interaction heritability dominating for LLAC at 22 days (40.57 %), 29 days (60.91 %), 36 days (63.83 %) and 43 days (47.45 %) after flowering, respectively. Phenotypic and genotypic correlations for both traits were positive among some pairwise developmental times indicating that genes expressed at these times complemented each other to improve LLAC or EAC in rapeseed. Significant negative correlation between LLAC and EAC at most developmental times indicated that it may not be possible to simultaneously reduce the contents of both traits by indirect selection.</description><subject>Acids</subject><subject>Analysis</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Brassica napus</subject><subject>Developmental stages</subject><subject>diploidy</subject><subject>Embryo</subject><subject>Embryonic development</subject><subject>Embryos</subject><subject>erucic acid</subject><subject>flowering</subject><subject>Flowers & plants</subject><subject>Gene expression</subject><subject>Genetic aspects</subject><subject>Genetic effects</subject><subject>Genetic research</subject><subject>Genetics</subject><subject>genotype</subject><subject>genotype-environment interaction</subject><subject>heritability</subject><subject>Life Sciences</subject><subject>linolenic acid</subject><subject>Linolenic acids</subject><subject>plant breeding</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Pathology</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>quantitative traits</subject><subject>rapeseed</subject><subject>seed development</subject><issn>0014-2336</issn><issn>1573-5060</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9ktuK1TAUhosouB19AK8MeDOC3SZNmrSXM-MRNnihcx3SdGWToU1qVgu7z-LLmroVD4gEclj831rh5y-Kp4zuGaXqFTIqG1ZSVpdMcFme7hU7Vite1lTS-8WOUibKinP5sHiEeEcpbVVNd8XX12swo7fkCAEInKYEiD4GYoIZVvRIoiOjmSHl90ti1zlOg8GNMKEnMHZpjd_hOZdwxRlGJC4mMvgQBwg_hWmx29X6ntgYZggzEh9IMhMgQE8ur5PJk60hwUwLksP-xePigTMDwpMf50Vx-_bN55v35eHjuw83V4fSClnNeW-crJ3qBO-qyvTG1ZY1ohdCyR5a2zSqp1zKznRNW9fMUsk7KpyRHFpa1fyiuDz3nVL8sgDOevRoYRhMgLigZoplr7LBKkuf_yW9i8tmzaaqheSqVeyX6mgG0D64OCdjt6b6SjFBlWz4Nnb_D1VePWR7YwDnc_0PgJ0BmyJiAqen5EeTVs2o3lKgzynQOQV6S4E-ZaY6M5i14Qjptw__B3p2hpyJ2hyTR337qaJM5hRVSraCfwMwDb6L</recordid><startdate>20150901</startdate><enddate>20150901</enddate><creator>Variath, Murali Tottekkaad</creator><creator>Wu, Jianguo G</creator><creator>Shi, Chunhai H</creator><general>Springer Netherlands</general><general>Springer</general><general>Springer Nature B.V</general><scope>FBQ</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7TM</scope><scope>7X2</scope><scope>7XB</scope><scope>88I</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>M0K</scope><scope>M2P</scope><scope>M7N</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>RC3</scope></search><sort><creationdate>20150901</creationdate><title>Dynamic gene expression analysis of maternal, cytoplasmic and embryo genetic systems for linolenic and erucic acid contents in rapeseed (Brassica napus L.)</title><author>Variath, Murali Tottekkaad ; Wu, Jianguo G ; Shi, Chunhai H</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c462t-c48f65f7b43b22adaf5c184d4476de9c887d0366bab89551c063b04fa63e90253</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Acids</topic><topic>Analysis</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Brassica napus</topic><topic>Developmental stages</topic><topic>diploidy</topic><topic>Embryo</topic><topic>Embryonic development</topic><topic>Embryos</topic><topic>erucic acid</topic><topic>flowering</topic><topic>Flowers & plants</topic><topic>Gene expression</topic><topic>Genetic aspects</topic><topic>Genetic effects</topic><topic>Genetic research</topic><topic>Genetics</topic><topic>genotype</topic><topic>genotype-environment interaction</topic><topic>heritability</topic><topic>Life Sciences</topic><topic>linolenic acid</topic><topic>Linolenic acids</topic><topic>plant breeding</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Pathology</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>quantitative traits</topic><topic>rapeseed</topic><topic>seed development</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Variath, Murali Tottekkaad</creatorcontrib><creatorcontrib>Wu, Jianguo G</creatorcontrib><creatorcontrib>Shi, Chunhai H</creatorcontrib><collection>AGRIS</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Agricultural Science Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Science Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>Agricultural Science Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><jtitle>Euphytica</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Variath, Murali Tottekkaad</au><au>Wu, Jianguo G</au><au>Shi, Chunhai H</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Dynamic gene expression analysis of maternal, cytoplasmic and embryo genetic systems for linolenic and erucic acid contents in rapeseed (Brassica napus L.)</atitle><jtitle>Euphytica</jtitle><stitle>Euphytica</stitle><date>2015-09-01</date><risdate>2015</risdate><volume>205</volume><issue>2</issue><spage>585</spage><epage>598</epage><pages>585-598</pages><issn>0014-2336</issn><eissn>1573-5060</eissn><abstract>The genetic effects including genetic main effects and genotype × environment (GE) interaction effects were analyzed for linolenic acid content (LLAC) and erucic acid content (EAC) in rapeseed using unconditional and conditional genetic models for diploid seed quantitative traits. The results from unconditional analysis revealed that GE effects were important for both traits during seed development. Also the higher magnitude of embryo effects at different developmental times indicated that seed selection would be useful for improving these quality traits in rapeseed. The conditional analysis showed that new expression of genes from maternal and embryo genetic systems occurred during different developmental stages and their magnitude could be influenced by the GE effects. The total narrow-sense heritability was high for both LLAC and EAC, with general heritability being more prominent for EAC at 15 days (32.87 %), 29 days (31.44 %), 36 days (60.55 %) and 43 days (76.45 %), and GE interaction heritability dominating for LLAC at 22 days (40.57 %), 29 days (60.91 %), 36 days (63.83 %) and 43 days (47.45 %) after flowering, respectively. Phenotypic and genotypic correlations for both traits were positive among some pairwise developmental times indicating that genes expressed at these times complemented each other to improve LLAC or EAC in rapeseed. Significant negative correlation between LLAC and EAC at most developmental times indicated that it may not be possible to simultaneously reduce the contents of both traits by indirect selection.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s10681-015-1436-x</doi><tpages>14</tpages></addata></record> |
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subjects | Acids Analysis Biomedical and Life Sciences Biotechnology Brassica napus Developmental stages diploidy Embryo Embryonic development Embryos erucic acid flowering Flowers & plants Gene expression Genetic aspects Genetic effects Genetic research Genetics genotype genotype-environment interaction heritability Life Sciences linolenic acid Linolenic acids plant breeding Plant Genetics and Genomics Plant Pathology Plant Physiology Plant Sciences quantitative traits rapeseed seed development |
title | Dynamic gene expression analysis of maternal, cytoplasmic and embryo genetic systems for linolenic and erucic acid contents in rapeseed (Brassica napus L.) |
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