A wrapper-based approach for feature selection and classification of major depressive disorder–bipolar disorders
Abstract Feature selection (FS) and classification are consecutive artificial intelligence (AI) methods used in data analysis, pattern classification, data mining and medical informatics. Beside promising studies in the application of AI methods to health informatics, working with more informative f...
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description | Abstract Feature selection (FS) and classification are consecutive artificial intelligence (AI) methods used in data analysis, pattern classification, data mining and medical informatics. Beside promising studies in the application of AI methods to health informatics, working with more informative features is crucial in order to contribute to early diagnosis. Being one of the prevalent psychiatric disorders, depressive episodes of bipolar disorder (BD) is often misdiagnosed as major depressive disorder (MDD), leading to suboptimal therapy and poor outcomes. Therefore discriminating MDD and BD at earlier stages of illness could help to facilitate efficient and specific treatment. In this study, a nature inspired and novel FS algorithm based on standard Ant Colony Optimization (ACO), called improved ACO (IACO), was used to reduce the number of features by removing irrelevant and redundant data. The selected features were then fed into support vector machine (SVM), a powerful mathematical tool for data classification, regression, function estimation and modeling processes, in order to classify MDD and BD subjects. Proposed method used coherence, a promising quantitative electroencephalography (EEG) biomarker, values calculated from alpha, theta and delta frequency bands. The noteworthy performance of novel IACO–SVM approach stated that it is possible to discriminate 46 BD and 55 MDD subjects using 22 of 48 features with 80.19% overall classification accuracy. The performance of IACO algorithm was also compared to the performance of standard ACO, genetic algorithm (GA) and particle swarm optimization (PSO) algorithms in terms of their classification accuracy and number of selected features. In order to provide an almost unbiased estimate of classification error, the validation process was performed using nested cross-validation (CV) procedure. |
doi_str_mv | 10.1016/j.compbiomed.2015.06.021 |
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Beside promising studies in the application of AI methods to health informatics, working with more informative features is crucial in order to contribute to early diagnosis. Being one of the prevalent psychiatric disorders, depressive episodes of bipolar disorder (BD) is often misdiagnosed as major depressive disorder (MDD), leading to suboptimal therapy and poor outcomes. Therefore discriminating MDD and BD at earlier stages of illness could help to facilitate efficient and specific treatment. In this study, a nature inspired and novel FS algorithm based on standard Ant Colony Optimization (ACO), called improved ACO (IACO), was used to reduce the number of features by removing irrelevant and redundant data. The selected features were then fed into support vector machine (SVM), a powerful mathematical tool for data classification, regression, function estimation and modeling processes, in order to classify MDD and BD subjects. Proposed method used coherence, a promising quantitative electroencephalography (EEG) biomarker, values calculated from alpha, theta and delta frequency bands. The noteworthy performance of novel IACO–SVM approach stated that it is possible to discriminate 46 BD and 55 MDD subjects using 22 of 48 features with 80.19% overall classification accuracy. The performance of IACO algorithm was also compared to the performance of standard ACO, genetic algorithm (GA) and particle swarm optimization (PSO) algorithms in terms of their classification accuracy and number of selected features. In order to provide an almost unbiased estimate of classification error, the validation process was performed using nested cross-validation (CV) procedure.</description><identifier>ISSN: 0010-4825</identifier><identifier>EISSN: 1879-0534</identifier><identifier>DOI: 10.1016/j.compbiomed.2015.06.021</identifier><identifier>PMID: 26164033</identifier><identifier>CODEN: CBMDAW</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>Accuracy ; Algorithms ; Artificial Intelligence ; Behavior ; Bipolar disorder ; Bipolar Disorder - diagnosis ; Bipolar Disorder - physiopathology ; Classification ; Coherence ; Data mining ; Depressive Disorder, Major - diagnosis ; Depressive Disorder, Major - physiopathology ; Diagnosis, Computer-Assisted - methods ; Electroencephalography ; Female ; Formicidae ; Heuristic ; Humans ; Improved Ant Colony Optimization ; Internal Medicine ; Major depressive disorder ; Male ; Medical imaging ; Other ; Pheromones ; Retrospective Studies ; Signal Processing, Computer-Assisted ; Statistical methods ; Studies ; Support Vector Machine</subject><ispartof>Computers in biology and medicine, 2015-09, Vol.64, p.127-137</ispartof><rights>Elsevier Ltd</rights><rights>2015 Elsevier Ltd</rights><rights>Copyright © 2015 Elsevier Ltd. All rights reserved.</rights><rights>Copyright Elsevier Limited Sep 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c556t-e70607b27090e92aebc5014b61da1ef3cac0b8623da5977b545fa682862332943</citedby><cites>FETCH-LOGICAL-c556t-e70607b27090e92aebc5014b61da1ef3cac0b8623da5977b545fa682862332943</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0010482515002395$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26164033$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tekin Erguzel, Turker</creatorcontrib><creatorcontrib>Tas, Cumhur</creatorcontrib><creatorcontrib>Cebi, Merve</creatorcontrib><title>A wrapper-based approach for feature selection and classification of major depressive disorder–bipolar disorders</title><title>Computers in biology and medicine</title><addtitle>Comput Biol Med</addtitle><description>Abstract Feature selection (FS) and classification are consecutive artificial intelligence (AI) methods used in data analysis, pattern classification, data mining and medical informatics. Beside promising studies in the application of AI methods to health informatics, working with more informative features is crucial in order to contribute to early diagnosis. Being one of the prevalent psychiatric disorders, depressive episodes of bipolar disorder (BD) is often misdiagnosed as major depressive disorder (MDD), leading to suboptimal therapy and poor outcomes. Therefore discriminating MDD and BD at earlier stages of illness could help to facilitate efficient and specific treatment. In this study, a nature inspired and novel FS algorithm based on standard Ant Colony Optimization (ACO), called improved ACO (IACO), was used to reduce the number of features by removing irrelevant and redundant data. The selected features were then fed into support vector machine (SVM), a powerful mathematical tool for data classification, regression, function estimation and modeling processes, in order to classify MDD and BD subjects. Proposed method used coherence, a promising quantitative electroencephalography (EEG) biomarker, values calculated from alpha, theta and delta frequency bands. The noteworthy performance of novel IACO–SVM approach stated that it is possible to discriminate 46 BD and 55 MDD subjects using 22 of 48 features with 80.19% overall classification accuracy. The performance of IACO algorithm was also compared to the performance of standard ACO, genetic algorithm (GA) and particle swarm optimization (PSO) algorithms in terms of their classification accuracy and number of selected features. In order to provide an almost unbiased estimate of classification error, the validation process was performed using nested cross-validation (CV) procedure.</description><subject>Accuracy</subject><subject>Algorithms</subject><subject>Artificial Intelligence</subject><subject>Behavior</subject><subject>Bipolar disorder</subject><subject>Bipolar Disorder - diagnosis</subject><subject>Bipolar Disorder - physiopathology</subject><subject>Classification</subject><subject>Coherence</subject><subject>Data mining</subject><subject>Depressive Disorder, Major - diagnosis</subject><subject>Depressive Disorder, Major - physiopathology</subject><subject>Diagnosis, Computer-Assisted - methods</subject><subject>Electroencephalography</subject><subject>Female</subject><subject>Formicidae</subject><subject>Heuristic</subject><subject>Humans</subject><subject>Improved Ant Colony Optimization</subject><subject>Internal Medicine</subject><subject>Major depressive disorder</subject><subject>Male</subject><subject>Medical imaging</subject><subject>Other</subject><subject>Pheromones</subject><subject>Retrospective Studies</subject><subject>Signal Processing, Computer-Assisted</subject><subject>Statistical methods</subject><subject>Studies</subject><subject>Support Vector Machine</subject><issn>0010-4825</issn><issn>1879-0534</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqNkkFu1TAQhiMEoo_CFZAlNmwSxnZsJxukUgGtVIkFsLYceyIckjjYL6264w7ckJPg9LVU6qorj2a-mdHvf4qCUKgoUPluqGyYls6HCV3FgIoKZAWMPil2tFFtCYLXT4sdAIWybpg4Kl6kNABADRyeF0dMUplDviviCbmKZlkwlp1J6EiOYzD2B-lDJD2a_RqRJBzR7n2YiZkdsaNJyffemptU6Mlkhkw7XCLmyiUS51OIDuPf3386v4TRxP-p9LJ41psx4avb97j4_unjt9Oz8uLL5_PTk4vSCiH3JSqQoDqmoAVsmcHOCqB1J6kzFHtujYWukYw7I1qlOlGL3siGbSnO2pofF28Pc7OgXyumvZ58sjiOZsawJk0VZUpxqtpHoNA0LW8bmdE3D9AhrHHOQm4GNnV9oJoDZWNIKWKvl-gnE681Bb1ZqAd9b6HeLNQgdbYwt76-XbB2W-2u8c6zDHw4AJg_79Jj1Ml6nC06H7NL2gX_mC3vHwyxo5-zpeNPvMZ0r0knpkF_3U5puyQqABhvBf8HzWDIEQ</recordid><startdate>20150901</startdate><enddate>20150901</enddate><creator>Tekin Erguzel, Turker</creator><creator>Tas, Cumhur</creator><creator>Cebi, Merve</creator><general>Elsevier Ltd</general><general>Elsevier Limited</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7RV</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AL</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>JQ2</scope><scope>K7-</scope><scope>K9.</scope><scope>KB0</scope><scope>LK8</scope><scope>M0N</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>M7Z</scope><scope>MBDVC</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>7QO</scope></search><sort><creationdate>20150901</creationdate><title>A wrapper-based approach for feature selection and classification of major depressive disorder–bipolar disorders</title><author>Tekin Erguzel, Turker ; Tas, Cumhur ; Cebi, Merve</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c556t-e70607b27090e92aebc5014b61da1ef3cac0b8623da5977b545fa682862332943</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Accuracy</topic><topic>Algorithms</topic><topic>Artificial Intelligence</topic><topic>Behavior</topic><topic>Bipolar disorder</topic><topic>Bipolar Disorder - diagnosis</topic><topic>Bipolar Disorder - physiopathology</topic><topic>Classification</topic><topic>Coherence</topic><topic>Data mining</topic><topic>Depressive Disorder, Major - diagnosis</topic><topic>Depressive Disorder, Major - physiopathology</topic><topic>Diagnosis, Computer-Assisted - methods</topic><topic>Electroencephalography</topic><topic>Female</topic><topic>Formicidae</topic><topic>Heuristic</topic><topic>Humans</topic><topic>Improved Ant Colony Optimization</topic><topic>Internal Medicine</topic><topic>Major depressive disorder</topic><topic>Male</topic><topic>Medical imaging</topic><topic>Other</topic><topic>Pheromones</topic><topic>Retrospective Studies</topic><topic>Signal Processing, Computer-Assisted</topic><topic>Statistical methods</topic><topic>Studies</topic><topic>Support Vector Machine</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tekin Erguzel, Turker</creatorcontrib><creatorcontrib>Tas, Cumhur</creatorcontrib><creatorcontrib>Cebi, Merve</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nursing & Allied Health Database</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Computing Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Computer Science Collection</collection><collection>Computer Science Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>ProQuest Biological Science Collection</collection><collection>Computing Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Biological Science Database</collection><collection>Biochemistry Abstracts 1</collection><collection>Research Library (Corporate)</collection><collection>Nursing & Allied Health Premium</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>Biotechnology Research Abstracts</collection><jtitle>Computers in biology and medicine</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tekin Erguzel, Turker</au><au>Tas, Cumhur</au><au>Cebi, Merve</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A wrapper-based approach for feature selection and classification of major depressive disorder–bipolar disorders</atitle><jtitle>Computers in biology and medicine</jtitle><addtitle>Comput Biol Med</addtitle><date>2015-09-01</date><risdate>2015</risdate><volume>64</volume><spage>127</spage><epage>137</epage><pages>127-137</pages><issn>0010-4825</issn><eissn>1879-0534</eissn><coden>CBMDAW</coden><abstract>Abstract Feature selection (FS) and classification are consecutive artificial intelligence (AI) methods used in data analysis, pattern classification, data mining and medical informatics. Beside promising studies in the application of AI methods to health informatics, working with more informative features is crucial in order to contribute to early diagnosis. Being one of the prevalent psychiatric disorders, depressive episodes of bipolar disorder (BD) is often misdiagnosed as major depressive disorder (MDD), leading to suboptimal therapy and poor outcomes. Therefore discriminating MDD and BD at earlier stages of illness could help to facilitate efficient and specific treatment. In this study, a nature inspired and novel FS algorithm based on standard Ant Colony Optimization (ACO), called improved ACO (IACO), was used to reduce the number of features by removing irrelevant and redundant data. The selected features were then fed into support vector machine (SVM), a powerful mathematical tool for data classification, regression, function estimation and modeling processes, in order to classify MDD and BD subjects. Proposed method used coherence, a promising quantitative electroencephalography (EEG) biomarker, values calculated from alpha, theta and delta frequency bands. The noteworthy performance of novel IACO–SVM approach stated that it is possible to discriminate 46 BD and 55 MDD subjects using 22 of 48 features with 80.19% overall classification accuracy. The performance of IACO algorithm was also compared to the performance of standard ACO, genetic algorithm (GA) and particle swarm optimization (PSO) algorithms in terms of their classification accuracy and number of selected features. In order to provide an almost unbiased estimate of classification error, the validation process was performed using nested cross-validation (CV) procedure.</abstract><cop>United States</cop><pub>Elsevier Ltd</pub><pmid>26164033</pmid><doi>10.1016/j.compbiomed.2015.06.021</doi><tpages>11</tpages></addata></record> |
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subjects | Accuracy Algorithms Artificial Intelligence Behavior Bipolar disorder Bipolar Disorder - diagnosis Bipolar Disorder - physiopathology Classification Coherence Data mining Depressive Disorder, Major - diagnosis Depressive Disorder, Major - physiopathology Diagnosis, Computer-Assisted - methods Electroencephalography Female Formicidae Heuristic Humans Improved Ant Colony Optimization Internal Medicine Major depressive disorder Male Medical imaging Other Pheromones Retrospective Studies Signal Processing, Computer-Assisted Statistical methods Studies Support Vector Machine |
title | A wrapper-based approach for feature selection and classification of major depressive disorder–bipolar disorders |
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