Evidence of novel plant-species specific ammonia oxidizing bacterial clades in acidic South African fynbos soils
Ammonia‐oxidizing bacteria (AOB) are essential in the biogeochemical cycling of nitrogen as they catalyze the rate‐limiting oxidation of ammonia into nitrite. Since their first isolation in the late 19th century, chemolithoautotrophic AOBs have been identified in a wide range of natural (e.g., soils...
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Veröffentlicht in: | Journal of basic microbiology 2015-08, Vol.55 (8), p.1040-1047 |
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creator | Ramond, Jean-Baptiste Lako, Joseph D. W. Stafford, William H. L. Tuffin, Marla I. Cowan, Don A. |
description | Ammonia‐oxidizing bacteria (AOB) are essential in the biogeochemical cycling of nitrogen as they catalyze the rate‐limiting oxidation of ammonia into nitrite. Since their first isolation in the late 19th century, chemolithoautotrophic AOBs have been identified in a wide range of natural (e.g., soils, sediments, estuarine, and freshwaters) and man created or impacted habitats (e.g., wastewater treatment plants and agricultural soils). However, little is known on the plant‐species association of AOBs, particularly in the nutrient‐starved fynbos terrestrial biome. In this study, we evaluated the diversity of AOBs in the plant canopy of three South African fynbos‐specific plant species, namely Leucadendron xanthoconus, Leucospermum truncatulum and Leucadendron microcephalum, through the construction of amoA‐gene clone libraries. Our results clearly demonstrate that plant‐species specific and monophyletic AOB clades are present in fynbos canopy soils. |
doi_str_mv | 10.1002/jobm.201400933 |
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W. ; Stafford, William H. L. ; Tuffin, Marla I. ; Cowan, Don A.</creator><creatorcontrib>Ramond, Jean-Baptiste ; Lako, Joseph D. W. ; Stafford, William H. L. ; Tuffin, Marla I. ; Cowan, Don A.</creatorcontrib><description>Ammonia‐oxidizing bacteria (AOB) are essential in the biogeochemical cycling of nitrogen as they catalyze the rate‐limiting oxidation of ammonia into nitrite. Since their first isolation in the late 19th century, chemolithoautotrophic AOBs have been identified in a wide range of natural (e.g., soils, sediments, estuarine, and freshwaters) and man created or impacted habitats (e.g., wastewater treatment plants and agricultural soils). However, little is known on the plant‐species association of AOBs, particularly in the nutrient‐starved fynbos terrestrial biome. In this study, we evaluated the diversity of AOBs in the plant canopy of three South African fynbos‐specific plant species, namely Leucadendron xanthoconus, Leucospermum truncatulum and Leucadendron microcephalum, through the construction of amoA‐gene clone libraries. Our results clearly demonstrate that plant‐species specific and monophyletic AOB clades are present in fynbos canopy soils.</description><identifier>ISSN: 0233-111X</identifier><identifier>EISSN: 1521-4028</identifier><identifier>DOI: 10.1002/jobm.201400933</identifier><identifier>PMID: 25721729</identifier><language>eng</language><publisher>Germany: Blackwell Publishing Ltd</publisher><subject>Ammonia - metabolism ; Ammonia oxidizers ; amoA-gene diversity ; Bacteria ; Betaproteobacteria - classification ; Betaproteobacteria - genetics ; Betaproteobacteria - isolation & purification ; Biodiversity ; Fynbos soil ; Gene Library ; Leucospermum ; Nitrification ; Nitrogen - metabolism ; Oxidation-Reduction ; Oxidoreductases - genetics ; Oxidoreductases - metabolism ; Phylogeny ; Plant-microbe interactions ; Proteaceae - microbiology ; Proteaceae family ; Rhizosphere ; Soil - chemistry ; Soil Microbiology ; South Africa</subject><ispartof>Journal of basic microbiology, 2015-08, Vol.55 (8), p.1040-1047</ispartof><rights>2015 WILEY-VCH Verlag GmbH & Co. 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KGaA, Weinheim.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4563-c952d38b7f992df1607d96acafca3128528c013f4da7e5e0e353e6a9601597b73</citedby><cites>FETCH-LOGICAL-c4563-c952d38b7f992df1607d96acafca3128528c013f4da7e5e0e353e6a9601597b73</cites><orcidid>0000-0001-5175-2745</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fjobm.201400933$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fjobm.201400933$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,780,784,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25721729$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ramond, Jean-Baptiste</creatorcontrib><creatorcontrib>Lako, Joseph D. W.</creatorcontrib><creatorcontrib>Stafford, William H. L.</creatorcontrib><creatorcontrib>Tuffin, Marla I.</creatorcontrib><creatorcontrib>Cowan, Don A.</creatorcontrib><title>Evidence of novel plant-species specific ammonia oxidizing bacterial clades in acidic South African fynbos soils</title><title>Journal of basic microbiology</title><addtitle>J. Basic Microbiol</addtitle><description>Ammonia‐oxidizing bacteria (AOB) are essential in the biogeochemical cycling of nitrogen as they catalyze the rate‐limiting oxidation of ammonia into nitrite. Since their first isolation in the late 19th century, chemolithoautotrophic AOBs have been identified in a wide range of natural (e.g., soils, sediments, estuarine, and freshwaters) and man created or impacted habitats (e.g., wastewater treatment plants and agricultural soils). However, little is known on the plant‐species association of AOBs, particularly in the nutrient‐starved fynbos terrestrial biome. In this study, we evaluated the diversity of AOBs in the plant canopy of three South African fynbos‐specific plant species, namely Leucadendron xanthoconus, Leucospermum truncatulum and Leucadendron microcephalum, through the construction of amoA‐gene clone libraries. Our results clearly demonstrate that plant‐species specific and monophyletic AOB clades are present in fynbos canopy soils.</description><subject>Ammonia - metabolism</subject><subject>Ammonia oxidizers</subject><subject>amoA-gene diversity</subject><subject>Bacteria</subject><subject>Betaproteobacteria - classification</subject><subject>Betaproteobacteria - genetics</subject><subject>Betaproteobacteria - isolation & purification</subject><subject>Biodiversity</subject><subject>Fynbos soil</subject><subject>Gene Library</subject><subject>Leucospermum</subject><subject>Nitrification</subject><subject>Nitrogen - metabolism</subject><subject>Oxidation-Reduction</subject><subject>Oxidoreductases - genetics</subject><subject>Oxidoreductases - metabolism</subject><subject>Phylogeny</subject><subject>Plant-microbe interactions</subject><subject>Proteaceae - microbiology</subject><subject>Proteaceae family</subject><subject>Rhizosphere</subject><subject>Soil - chemistry</subject><subject>Soil Microbiology</subject><subject>South Africa</subject><issn>0233-111X</issn><issn>1521-4028</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkT1P5DAURS3ECoaBlhK5pMmsP8ZxXAIaWEbsUgCCznKcZzAkcYgzLMOvx-zAaDuqV_jco_d8EdqnZEIJYT8fQ9lMGKFTQhTnG2hEBaPZlLBiE40I4zyjlN5to50YH0liFFNbaJsJyahkaoS62YuvoLWAg8NteIEad7Vphyx2YD1E_G86b7FpmtB6g8Orr_ybb-9xaewAvTc1trWpEutbbGx6tfgqLIYHfOR6b02L3bItQ1IFX8dd9MOZOsLe5xyjm9PZ9cmv7OLy7Pzk6CKzU5HzzCrBKl6U0qWVK0dzIiuVG2ucNZyyQrDCEsrdtDISBBDggkNuVE6oULKUfIwOV96uD88LiINufLRQp-MgLKKmkqj0BZIW36O5KlQuJGcJnaxQ24cYe3C6631j-qWmRH8Uoj8K0etCUuDg070oG6jW-FcDCVAr4K-vYfmNTs8vj3__L89WWR8HeF1nTf-kc8ml0Ld_zrSay-K2OGX6mL8DmBWnHg</recordid><startdate>201508</startdate><enddate>201508</enddate><creator>Ramond, Jean-Baptiste</creator><creator>Lako, Joseph D. W.</creator><creator>Stafford, William H. L.</creator><creator>Tuffin, Marla I.</creator><creator>Cowan, Don A.</creator><general>Blackwell Publishing Ltd</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7QL</scope><scope>7T7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><orcidid>https://orcid.org/0000-0001-5175-2745</orcidid></search><sort><creationdate>201508</creationdate><title>Evidence of novel plant-species specific ammonia oxidizing bacterial clades in acidic South African fynbos soils</title><author>Ramond, Jean-Baptiste ; Lako, Joseph D. W. ; Stafford, William H. L. ; Tuffin, Marla I. ; Cowan, Don A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4563-c952d38b7f992df1607d96acafca3128528c013f4da7e5e0e353e6a9601597b73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Ammonia - metabolism</topic><topic>Ammonia oxidizers</topic><topic>amoA-gene diversity</topic><topic>Bacteria</topic><topic>Betaproteobacteria - classification</topic><topic>Betaproteobacteria - genetics</topic><topic>Betaproteobacteria - isolation & purification</topic><topic>Biodiversity</topic><topic>Fynbos soil</topic><topic>Gene Library</topic><topic>Leucospermum</topic><topic>Nitrification</topic><topic>Nitrogen - metabolism</topic><topic>Oxidation-Reduction</topic><topic>Oxidoreductases - genetics</topic><topic>Oxidoreductases - metabolism</topic><topic>Phylogeny</topic><topic>Plant-microbe interactions</topic><topic>Proteaceae - microbiology</topic><topic>Proteaceae family</topic><topic>Rhizosphere</topic><topic>Soil - chemistry</topic><topic>Soil Microbiology</topic><topic>South Africa</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ramond, Jean-Baptiste</creatorcontrib><creatorcontrib>Lako, Joseph D. 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Since their first isolation in the late 19th century, chemolithoautotrophic AOBs have been identified in a wide range of natural (e.g., soils, sediments, estuarine, and freshwaters) and man created or impacted habitats (e.g., wastewater treatment plants and agricultural soils). However, little is known on the plant‐species association of AOBs, particularly in the nutrient‐starved fynbos terrestrial biome. In this study, we evaluated the diversity of AOBs in the plant canopy of three South African fynbos‐specific plant species, namely Leucadendron xanthoconus, Leucospermum truncatulum and Leucadendron microcephalum, through the construction of amoA‐gene clone libraries. 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subjects | Ammonia - metabolism Ammonia oxidizers amoA-gene diversity Bacteria Betaproteobacteria - classification Betaproteobacteria - genetics Betaproteobacteria - isolation & purification Biodiversity Fynbos soil Gene Library Leucospermum Nitrification Nitrogen - metabolism Oxidation-Reduction Oxidoreductases - genetics Oxidoreductases - metabolism Phylogeny Plant-microbe interactions Proteaceae - microbiology Proteaceae family Rhizosphere Soil - chemistry Soil Microbiology South Africa |
title | Evidence of novel plant-species specific ammonia oxidizing bacterial clades in acidic South African fynbos soils |
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