Evidence of novel plant-species specific ammonia oxidizing bacterial clades in acidic South African fynbos soils

Ammonia‐oxidizing bacteria (AOB) are essential in the biogeochemical cycling of nitrogen as they catalyze the rate‐limiting oxidation of ammonia into nitrite. Since their first isolation in the late 19th century, chemolithoautotrophic AOBs have been identified in a wide range of natural (e.g., soils...

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Veröffentlicht in:Journal of basic microbiology 2015-08, Vol.55 (8), p.1040-1047
Hauptverfasser: Ramond, Jean-Baptiste, Lako, Joseph D. W., Stafford, William H. L., Tuffin, Marla I., Cowan, Don A.
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container_end_page 1047
container_issue 8
container_start_page 1040
container_title Journal of basic microbiology
container_volume 55
creator Ramond, Jean-Baptiste
Lako, Joseph D. W.
Stafford, William H. L.
Tuffin, Marla I.
Cowan, Don A.
description Ammonia‐oxidizing bacteria (AOB) are essential in the biogeochemical cycling of nitrogen as they catalyze the rate‐limiting oxidation of ammonia into nitrite. Since their first isolation in the late 19th century, chemolithoautotrophic AOBs have been identified in a wide range of natural (e.g., soils, sediments, estuarine, and freshwaters) and man created or impacted habitats (e.g., wastewater treatment plants and agricultural soils). However, little is known on the plant‐species association of AOBs, particularly in the nutrient‐starved fynbos terrestrial biome. In this study, we evaluated the diversity of AOBs in the plant canopy of three South African fynbos‐specific plant species, namely Leucadendron xanthoconus, Leucospermum truncatulum and Leucadendron microcephalum, through the construction of amoA‐gene clone libraries. Our results clearly demonstrate that plant‐species specific and monophyletic AOB clades are present in fynbos canopy soils.
doi_str_mv 10.1002/jobm.201400933
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subjects Ammonia - metabolism
Ammonia oxidizers
amoA-gene diversity
Bacteria
Betaproteobacteria - classification
Betaproteobacteria - genetics
Betaproteobacteria - isolation & purification
Biodiversity
Fynbos soil
Gene Library
Leucospermum
Nitrification
Nitrogen - metabolism
Oxidation-Reduction
Oxidoreductases - genetics
Oxidoreductases - metabolism
Phylogeny
Plant-microbe interactions
Proteaceae - microbiology
Proteaceae family
Rhizosphere
Soil - chemistry
Soil Microbiology
South Africa
title Evidence of novel plant-species specific ammonia oxidizing bacterial clades in acidic South African fynbos soils
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