Modeling the dynamics of a tracer particle in an elastic active gel

The internal dynamics of active gels both in artificial (in vitro) model systems and inside the cytoskeleton of living cells has been extensively studied with experiments of recent years. These dynamics are probed using tracer particles embedded in the network of biopolymers together with molecular...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Physical review. E, Statistical, nonlinear, and soft matter physics Statistical, nonlinear, and soft matter physics, 2015-07, Vol.92 (1), p.012716-012716, Article 012716
Hauptverfasser: Ben-Isaac, E, Fodor, É, Visco, P, van Wijland, F, Gov, Nir S
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 012716
container_issue 1
container_start_page 012716
container_title Physical review. E, Statistical, nonlinear, and soft matter physics
container_volume 92
creator Ben-Isaac, E
Fodor, É
Visco, P
van Wijland, F
Gov, Nir S
description The internal dynamics of active gels both in artificial (in vitro) model systems and inside the cytoskeleton of living cells has been extensively studied with experiments of recent years. These dynamics are probed using tracer particles embedded in the network of biopolymers together with molecular motors, and distinct nonthermal behavior is observed. We present a theoretical model of the dynamics of a trapped active particle, which allows us to quantify the deviations from equilibrium behavior, using both analytic and numerical calculations. We map the different regimes of dynamics in this system and highlight the different manifestations of activity: breakdown of the virial theorem and equipartition, different elasticity-dependent "effective temperatures," and distinct non-Gaussian distributions. Our results shed light on puzzling observations in active gel experiments and provide physical interpretation of existing observations, as well as predictions for future studies.
doi_str_mv 10.1103/physreve.92.012716
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1704350071</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1704350071</sourcerecordid><originalsourceid>FETCH-LOGICAL-c413t-b3681369f5b9f17a3793a6c015425367ae4772cf1935da33f14b3b52eab080983</originalsourceid><addsrcrecordid>eNo9kMtOwzAURC0EolD4ARbISzYpvr5xHC9RVR5SEQjBOnKcmzYoL-y0Uv-eVC2sZkaamcVh7AbEDEDgfb_eBU9bmhk5EyA1JCfsApQSkUSdnO49mgi1UhN2GcK3ECgxjc_ZRCZSxxLggs1fu4Lqql3xYU282LW2qVzgXcktH7x15Hlv_VC5mnjVcttyqm0YM7duqLbEV1RfsbPS1oGujzplX4-Lz_lztHx7epk_LCMXAw5RjkkKmJhS5aYEbVEbtIkToGKpMNGWYq2lK8GgKixiCXGOuZJkc5EKk-KU3R1-e9_9bCgMWVMFR3VtW-o2IQMtYlRCaBir8lB1vgsjpDLrfdVYv8tAZHt42fsI74O2i8zI7ABvHN0e_zd5Q8X_5I8W_gKBXWqn</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1704350071</pqid></control><display><type>article</type><title>Modeling the dynamics of a tracer particle in an elastic active gel</title><source>MEDLINE</source><source>American Physical Society Journals</source><creator>Ben-Isaac, E ; Fodor, É ; Visco, P ; van Wijland, F ; Gov, Nir S</creator><creatorcontrib>Ben-Isaac, E ; Fodor, É ; Visco, P ; van Wijland, F ; Gov, Nir S</creatorcontrib><description>The internal dynamics of active gels both in artificial (in vitro) model systems and inside the cytoskeleton of living cells has been extensively studied with experiments of recent years. These dynamics are probed using tracer particles embedded in the network of biopolymers together with molecular motors, and distinct nonthermal behavior is observed. We present a theoretical model of the dynamics of a trapped active particle, which allows us to quantify the deviations from equilibrium behavior, using both analytic and numerical calculations. We map the different regimes of dynamics in this system and highlight the different manifestations of activity: breakdown of the virial theorem and equipartition, different elasticity-dependent "effective temperatures," and distinct non-Gaussian distributions. Our results shed light on puzzling observations in active gel experiments and provide physical interpretation of existing observations, as well as predictions for future studies.</description><identifier>ISSN: 1539-3755</identifier><identifier>EISSN: 1550-2376</identifier><identifier>DOI: 10.1103/physreve.92.012716</identifier><identifier>PMID: 26274211</identifier><language>eng</language><publisher>United States</publisher><subject>Computer Simulation ; Elasticity ; Gels - chemistry ; Kinetics ; Models, Theoretical ; Motion ; Temperature</subject><ispartof>Physical review. E, Statistical, nonlinear, and soft matter physics, 2015-07, Vol.92 (1), p.012716-012716, Article 012716</ispartof><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c413t-b3681369f5b9f17a3793a6c015425367ae4772cf1935da33f14b3b52eab080983</citedby><cites>FETCH-LOGICAL-c413t-b3681369f5b9f17a3793a6c015425367ae4772cf1935da33f14b3b52eab080983</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,2863,2864,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26274211$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ben-Isaac, E</creatorcontrib><creatorcontrib>Fodor, É</creatorcontrib><creatorcontrib>Visco, P</creatorcontrib><creatorcontrib>van Wijland, F</creatorcontrib><creatorcontrib>Gov, Nir S</creatorcontrib><title>Modeling the dynamics of a tracer particle in an elastic active gel</title><title>Physical review. E, Statistical, nonlinear, and soft matter physics</title><addtitle>Phys Rev E Stat Nonlin Soft Matter Phys</addtitle><description>The internal dynamics of active gels both in artificial (in vitro) model systems and inside the cytoskeleton of living cells has been extensively studied with experiments of recent years. These dynamics are probed using tracer particles embedded in the network of biopolymers together with molecular motors, and distinct nonthermal behavior is observed. We present a theoretical model of the dynamics of a trapped active particle, which allows us to quantify the deviations from equilibrium behavior, using both analytic and numerical calculations. We map the different regimes of dynamics in this system and highlight the different manifestations of activity: breakdown of the virial theorem and equipartition, different elasticity-dependent "effective temperatures," and distinct non-Gaussian distributions. Our results shed light on puzzling observations in active gel experiments and provide physical interpretation of existing observations, as well as predictions for future studies.</description><subject>Computer Simulation</subject><subject>Elasticity</subject><subject>Gels - chemistry</subject><subject>Kinetics</subject><subject>Models, Theoretical</subject><subject>Motion</subject><subject>Temperature</subject><issn>1539-3755</issn><issn>1550-2376</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kMtOwzAURC0EolD4ARbISzYpvr5xHC9RVR5SEQjBOnKcmzYoL-y0Uv-eVC2sZkaamcVh7AbEDEDgfb_eBU9bmhk5EyA1JCfsApQSkUSdnO49mgi1UhN2GcK3ECgxjc_ZRCZSxxLggs1fu4Lqql3xYU282LW2qVzgXcktH7x15Hlv_VC5mnjVcttyqm0YM7duqLbEV1RfsbPS1oGujzplX4-Lz_lztHx7epk_LCMXAw5RjkkKmJhS5aYEbVEbtIkToGKpMNGWYq2lK8GgKixiCXGOuZJkc5EKk-KU3R1-e9_9bCgMWVMFR3VtW-o2IQMtYlRCaBir8lB1vgsjpDLrfdVYv8tAZHt42fsI74O2i8zI7ABvHN0e_zd5Q8X_5I8W_gKBXWqn</recordid><startdate>20150722</startdate><enddate>20150722</enddate><creator>Ben-Isaac, E</creator><creator>Fodor, É</creator><creator>Visco, P</creator><creator>van Wijland, F</creator><creator>Gov, Nir S</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20150722</creationdate><title>Modeling the dynamics of a tracer particle in an elastic active gel</title><author>Ben-Isaac, E ; Fodor, É ; Visco, P ; van Wijland, F ; Gov, Nir S</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c413t-b3681369f5b9f17a3793a6c015425367ae4772cf1935da33f14b3b52eab080983</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Computer Simulation</topic><topic>Elasticity</topic><topic>Gels - chemistry</topic><topic>Kinetics</topic><topic>Models, Theoretical</topic><topic>Motion</topic><topic>Temperature</topic><toplevel>online_resources</toplevel><creatorcontrib>Ben-Isaac, E</creatorcontrib><creatorcontrib>Fodor, É</creatorcontrib><creatorcontrib>Visco, P</creatorcontrib><creatorcontrib>van Wijland, F</creatorcontrib><creatorcontrib>Gov, Nir S</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Physical review. E, Statistical, nonlinear, and soft matter physics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ben-Isaac, E</au><au>Fodor, É</au><au>Visco, P</au><au>van Wijland, F</au><au>Gov, Nir S</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Modeling the dynamics of a tracer particle in an elastic active gel</atitle><jtitle>Physical review. E, Statistical, nonlinear, and soft matter physics</jtitle><addtitle>Phys Rev E Stat Nonlin Soft Matter Phys</addtitle><date>2015-07-22</date><risdate>2015</risdate><volume>92</volume><issue>1</issue><spage>012716</spage><epage>012716</epage><pages>012716-012716</pages><artnum>012716</artnum><issn>1539-3755</issn><eissn>1550-2376</eissn><abstract>The internal dynamics of active gels both in artificial (in vitro) model systems and inside the cytoskeleton of living cells has been extensively studied with experiments of recent years. These dynamics are probed using tracer particles embedded in the network of biopolymers together with molecular motors, and distinct nonthermal behavior is observed. We present a theoretical model of the dynamics of a trapped active particle, which allows us to quantify the deviations from equilibrium behavior, using both analytic and numerical calculations. We map the different regimes of dynamics in this system and highlight the different manifestations of activity: breakdown of the virial theorem and equipartition, different elasticity-dependent "effective temperatures," and distinct non-Gaussian distributions. Our results shed light on puzzling observations in active gel experiments and provide physical interpretation of existing observations, as well as predictions for future studies.</abstract><cop>United States</cop><pmid>26274211</pmid><doi>10.1103/physreve.92.012716</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1539-3755
ispartof Physical review. E, Statistical, nonlinear, and soft matter physics, 2015-07, Vol.92 (1), p.012716-012716, Article 012716
issn 1539-3755
1550-2376
language eng
recordid cdi_proquest_miscellaneous_1704350071
source MEDLINE; American Physical Society Journals
subjects Computer Simulation
Elasticity
Gels - chemistry
Kinetics
Models, Theoretical
Motion
Temperature
title Modeling the dynamics of a tracer particle in an elastic active gel
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-05T14%3A20%3A57IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Modeling%20the%20dynamics%20of%20a%20tracer%20particle%20in%20an%20elastic%20active%20gel&rft.jtitle=Physical%20review.%20E,%20Statistical,%20nonlinear,%20and%20soft%20matter%20physics&rft.au=Ben-Isaac,%20E&rft.date=2015-07-22&rft.volume=92&rft.issue=1&rft.spage=012716&rft.epage=012716&rft.pages=012716-012716&rft.artnum=012716&rft.issn=1539-3755&rft.eissn=1550-2376&rft_id=info:doi/10.1103/physreve.92.012716&rft_dat=%3Cproquest_cross%3E1704350071%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1704350071&rft_id=info:pmid/26274211&rfr_iscdi=true